Wall clock time and date at job start Tue Mar 31 2020 06:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.46930 * 2 1 4 4 C 1.52993 * 109.47660 * 239.99619 * 2 1 3 5 5 N 1.46905 * 109.47039 * 65.00109 * 4 2 1 6 6 C 1.46901 * 110.99870 * 180.02562 * 5 4 2 7 7 C 1.50697 * 109.46943 * 180.02562 * 6 5 4 8 8 H 1.08000 * 120.00162 * 359.97438 * 7 6 5 9 9 C 1.37883 * 120.00023 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99532 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00003 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.47043 * 89.99858 * 11 9 7 13 13 H 1.48494 * 109.47326 * 209.99769 * 11 9 7 14 14 H 1.48497 * 109.47436 * 330.00047 * 11 9 7 15 15 C 1.53002 * 109.47018 * 119.99296 * 2 1 3 16 16 C 1.50706 * 109.47407 * 295.00622 * 15 2 1 17 17 C 1.38236 * 119.99562 * 269.72564 * 16 15 2 18 18 C 1.38233 * 119.99310 * 179.76498 * 17 16 15 19 19 C 1.38232 * 120.00508 * 0.50448 * 18 17 16 20 20 C 1.50702 * 120.00564 * 179.72267 * 19 18 17 21 21 C 1.52996 * 109.47294 * 240.02378 * 20 19 18 22 22 C 1.52999 * 109.46752 * 0.02562 * 20 19 18 23 23 C 1.53005 * 109.46999 * 120.02248 * 20 19 18 24 24 C 1.38239 * 119.99724 * 359.74739 * 19 18 17 25 25 C 1.38228 * 120.00256 * 359.97438 * 24 19 18 26 26 H 1.08998 * 109.46936 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47633 * 300.00550 * 1 2 3 28 28 H 1.09008 * 109.46827 * 60.00928 * 1 2 3 29 29 H 1.09001 * 109.47393 * 305.00390 * 4 2 1 30 30 H 1.08998 * 109.47408 * 185.00036 * 4 2 1 31 31 H 1.00901 * 110.99869 * 56.04956 * 5 4 2 32 32 H 1.09004 * 109.47031 * 299.99620 * 6 5 4 33 33 H 1.08995 * 109.47111 * 59.99900 * 6 5 4 34 34 H 0.97001 * 119.99132 * 180.02562 * 10 9 7 35 35 H 1.09002 * 109.46730 * 55.00366 * 15 2 1 36 36 H 1.08994 * 109.47589 * 175.00151 * 15 2 1 37 37 H 1.07998 * 120.00132 * 359.97438 * 17 16 15 38 38 H 1.07999 * 119.99796 * 180.23098 * 18 17 16 39 39 H 1.08991 * 109.47165 * 60.00263 * 21 20 19 40 40 H 1.09000 * 109.46744 * 179.97438 * 21 20 19 41 41 H 1.08999 * 109.47121 * 299.99555 * 21 20 19 42 42 H 1.09000 * 109.47425 * 60.00075 * 22 20 19 43 43 H 1.09000 * 109.47052 * 179.97438 * 22 20 19 44 44 H 1.08994 * 109.47358 * 300.00065 * 22 20 19 45 45 H 1.08999 * 109.47441 * 60.00430 * 23 20 19 46 46 H 1.09000 * 109.46977 * 180.02562 * 23 20 19 47 47 H 1.09007 * 109.47035 * 300.00296 * 23 20 19 48 48 H 1.08003 * 119.99938 * 179.97438 * 24 19 18 49 49 H 1.07997 * 120.00629 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 1.6515 0.0374 -2.4456 6 6 2.1250 -0.6273 -3.6671 7 6 1.7091 0.1784 -4.8708 8 1 1.1488 1.0926 -4.7414 9 6 2.0431 -0.2519 -6.1374 10 7 2.7251 -1.3654 -6.2950 11 14 1.5270 0.7464 -7.6294 12 1 2.5871 1.7342 -7.9549 13 1 1.3245 -0.1617 -8.7868 14 1 0.2593 1.4606 -7.3328 15 6 2.0399 -0.7211 1.2494 16 6 1.6411 0.0572 2.4767 17 6 2.4838 1.0293 2.9826 18 6 2.1157 1.7466 4.1055 19 6 0.9100 1.4847 4.7286 20 6 0.5116 2.2623 5.9565 21 6 0.3192 1.2995 7.1298 22 6 1.6093 3.2714 6.2994 23 6 -0.7983 3.0056 5.6866 24 6 0.0697 0.5089 4.2257 25 6 0.4350 -0.2044 3.0994 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 1.6055 -1.7198 -1.2951 30 1 3.1264 -0.7995 -1.2054 31 1 1.9883 0.9872 -2.3967 32 1 3.2119 -0.7051 -3.6404 33 1 1.6907 -1.6250 -3.7295 34 1 2.9604 -1.6679 -7.1861 35 1 1.6053 -1.7197 1.2953 36 1 3.1262 -0.7994 1.2058 37 1 3.4280 1.2307 2.4986 38 1 2.7723 2.5087 4.4986 39 1 1.2522 0.7700 7.3221 40 1 0.0315 1.8621 8.0180 41 1 -0.4629 0.5807 6.8855 42 1 1.7463 3.9574 5.4635 43 1 1.3210 3.8342 7.1872 44 1 2.5424 2.7419 6.4915 45 1 -1.5804 2.2868 5.4423 46 1 -1.0862 3.5685 6.5746 47 1 -0.6612 3.6916 4.8506 48 1 -0.8722 0.3039 4.7127 49 1 -0.2212 -0.9670 2.7067 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425988821.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:25 Heat of formation + Delta-G solvation = -14.949929 kcal Electronic energy + Delta-G solvation = -22440.280464 eV Core-core repulsion = 19365.453894 eV Total energy + Delta-G solvation = -3074.826571 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.12563 -37.60112 -36.02162 -33.79205 -32.09828 -31.18896 -30.05818 -27.65859 -27.53431 -26.92091 -26.49857 -24.16139 -22.38679 -22.04693 -21.16890 -19.76942 -19.32886 -16.66830 -16.33191 -15.57716 -15.12006 -14.82274 -14.63906 -14.52724 -14.38650 -14.02653 -13.86539 -13.68970 -13.48407 -12.91536 -12.74454 -12.43226 -12.31627 -12.20125 -12.02154 -11.94878 -11.77152 -11.55665 -11.35594 -11.32634 -11.20250 -10.95496 -10.82656 -10.74739 -10.63358 -10.54922 -10.32716 -10.26295 -9.80825 -9.13999 -8.90994 -8.47045 -8.45531 -7.22702 -6.01208 -4.02913 1.32312 1.39184 3.32984 3.38867 3.43785 3.70735 4.34908 4.44757 4.48107 4.71305 4.82778 4.88407 4.97562 5.02783 5.19498 5.22278 5.27606 5.31999 5.34667 5.41057 5.45898 5.46590 5.54629 5.57663 5.59883 5.71098 5.73503 5.76757 5.81557 5.95138 5.96206 6.01215 6.03794 6.09269 6.10031 6.23346 6.35493 6.41761 6.45564 6.56961 6.63839 6.73050 6.80606 7.00320 7.29336 7.45908 7.81430 8.16118 8.44096 8.65889 9.06736 9.61863 11.09959 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.034002 B = 0.002326 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.286496 B =12032.362506 C =12231.821754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.080 4.080 3 H 0.065 0.935 4 C 0.064 3.936 5 N -0.688 5.688 6 C 0.194 3.806 7 C -0.513 4.513 8 H 0.062 0.938 9 C 0.054 3.946 10 N -0.899 5.899 11 Si 0.899 3.101 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.273 1.273 15 C -0.079 4.079 16 C -0.072 4.072 17 C -0.117 4.117 18 C -0.120 4.120 19 C -0.081 4.081 20 C -0.029 4.029 21 C -0.137 4.137 22 C -0.144 4.144 23 C -0.138 4.138 24 C -0.116 4.116 25 C -0.112 4.112 26 H 0.047 0.953 27 H 0.044 0.956 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.016 0.984 31 H 0.327 0.673 32 H -0.015 1.015 33 H 0.027 0.973 34 H 0.261 0.739 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.057 0.943 46 H 0.056 0.944 47 H 0.057 0.943 48 H 0.117 0.883 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.357 5.724 27.662 28.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.099 4.099 3 H 0.083 0.917 4 C -0.066 4.066 5 N -0.318 5.318 6 C 0.067 3.933 7 C -0.551 4.551 8 H 0.080 0.920 9 C -0.147 4.147 10 N -0.538 5.538 11 Si 0.727 3.273 12 H -0.207 1.207 13 H -0.213 1.213 14 H -0.198 1.198 15 C -0.117 4.117 16 C -0.072 4.072 17 C -0.135 4.135 18 C -0.138 4.138 19 C -0.081 4.081 20 C -0.029 4.029 21 C -0.195 4.195 22 C -0.201 4.201 23 C -0.196 4.196 24 C -0.134 4.134 25 C -0.130 4.130 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.034 0.966 31 H 0.143 0.857 32 H 0.002 0.998 33 H 0.045 0.955 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.137 0.863 38 H 0.140 0.860 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.075 0.925 47 H 0.076 0.924 48 H 0.135 0.865 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.916 5.309 27.473 28.254 hybrid contribution 0.799 0.554 -0.929 1.345 sum -3.117 5.863 26.544 27.362 Atomic orbital electron populations 1.21757 0.94673 1.01381 1.01622 1.21093 0.96864 0.99181 0.92755 0.91657 1.21931 0.96430 0.97900 0.90365 1.60637 1.64178 1.05065 1.01950 1.19539 0.92943 0.95121 0.85674 1.21201 1.34734 1.08703 0.90493 0.91992 1.25006 0.95285 0.95248 0.99169 1.69971 1.39298 1.21877 1.22669 0.86480 0.78974 0.79769 0.82076 1.20748 1.21258 1.19775 1.20709 1.01026 0.98364 0.91598 1.19923 0.94371 0.96635 0.96242 1.21060 0.99725 0.96240 0.96457 1.21116 0.96521 1.00044 0.96150 1.19721 0.94808 0.97000 0.96556 1.19480 0.95954 0.94705 0.92772 1.21880 1.01913 0.98805 0.96869 1.21957 0.98155 0.98545 1.01420 1.21890 0.95954 1.00131 1.01578 1.20911 0.99359 0.96445 0.96640 1.21046 0.96304 1.00082 0.95541 0.93415 0.93651 0.91213 0.91892 0.96621 0.85712 0.99760 0.95512 0.92955 0.91026 0.91252 0.86285 0.85994 0.92564 0.92517 0.92456 0.92223 0.92528 0.92316 0.92428 0.92521 0.92422 0.86549 0.86146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 8.65 37.16 0.32 -1.66 16 2 C -0.08 -1.16 2.52 -90.62 -0.23 -1.39 16 3 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 4 C 0.06 1.14 5.07 -3.82 -0.02 1.12 16 5 N -0.69 -15.00 5.94 -115.06 -0.68 -15.68 16 6 C 0.19 5.20 5.44 -4.98 -0.03 5.17 16 7 C -0.51 -14.79 9.32 -34.44 -0.32 -15.11 16 8 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 9 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 10 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 11 Si 0.90 21.98 29.54 -169.99 -5.02 16.95 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 15 C -0.08 -0.97 4.84 -27.88 -0.13 -1.10 16 16 C -0.07 -0.84 4.71 -104.62 -0.49 -1.33 16 17 C -0.12 -1.31 9.70 -39.58 -0.38 -1.69 16 18 C -0.12 -1.23 8.98 -39.59 -0.36 -1.59 16 19 C -0.08 -0.79 4.76 -104.62 -0.50 -1.29 16 20 C -0.03 -0.22 0.85 -155.66 -0.13 -0.36 16 21 C -0.14 -0.95 8.29 37.16 0.31 -0.64 16 22 C -0.14 -0.99 7.13 37.16 0.27 -0.72 16 23 C -0.14 -1.01 8.29 37.16 0.31 -0.70 16 24 C -0.12 -1.17 8.71 -39.58 -0.34 -1.51 16 25 C -0.11 -1.23 7.96 -39.58 -0.32 -1.55 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.04 0.60 6.26 -51.93 -0.33 0.27 16 28 H 0.07 1.15 7.75 -51.92 -0.40 0.75 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.33 6.84 8.72 -39.29 -0.34 6.50 16 32 H -0.02 -0.44 8.14 -51.93 -0.42 -0.86 16 33 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.07 0.84 8.09 -51.93 -0.42 0.42 16 36 H 0.07 0.82 8.08 -51.93 -0.42 0.40 16 37 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 38 H 0.12 1.05 5.90 -52.49 -0.31 0.74 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.06 0.39 7.39 -51.93 -0.38 0.01 16 42 H 0.06 0.42 7.51 -51.93 -0.39 0.03 16 43 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.06 0.40 7.51 -51.93 -0.39 0.01 16 45 H 0.06 0.42 7.39 -51.93 -0.38 0.03 16 46 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 48 H 0.12 1.00 7.10 -52.48 -0.37 0.62 16 49 H 0.12 1.23 8.04 -52.49 -0.42 0.81 16 LS Contribution 384.27 15.07 5.79 5.79 Total: -1.00 -30.37 384.27 -10.51 -40.87 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -9.18 Total: 1.45 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: -2.15 Total: -22.87 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: 0.05 Total: -42.19 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.37 -10.51 -40.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425988821.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.924 kcal (2) G-P(sol) polarization free energy of solvation -30.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds