Wall clock time and date at job start Tue Mar 31 2020 06:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.46930 * 2 1 4 4 C 1.52993 * 109.47660 * 239.99619 * 2 1 3 5 5 N 1.46905 * 109.47039 * 65.00109 * 4 2 1 6 6 C 1.46901 * 110.99870 * 180.02562 * 5 4 2 7 7 C 1.50697 * 109.46943 * 180.02562 * 6 5 4 8 8 H 1.08000 * 120.00162 * 359.97438 * 7 6 5 9 9 C 1.37883 * 120.00023 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99532 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00003 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.47043 * 89.99858 * 11 9 7 13 13 H 1.48494 * 109.47326 * 209.99769 * 11 9 7 14 14 H 1.48497 * 109.47436 * 330.00047 * 11 9 7 15 15 C 1.53002 * 109.47018 * 119.99296 * 2 1 3 16 16 C 1.50706 * 109.47407 * 295.00622 * 15 2 1 17 17 C 1.38236 * 119.99562 * 269.72564 * 16 15 2 18 18 C 1.38233 * 119.99310 * 179.76498 * 17 16 15 19 19 C 1.38232 * 120.00508 * 0.50448 * 18 17 16 20 20 C 1.50702 * 120.00564 * 179.72267 * 19 18 17 21 21 C 1.52996 * 109.47294 * 240.02378 * 20 19 18 22 22 C 1.52999 * 109.46752 * 0.02562 * 20 19 18 23 23 C 1.53005 * 109.46999 * 120.02248 * 20 19 18 24 24 C 1.38239 * 119.99724 * 359.74739 * 19 18 17 25 25 C 1.38228 * 120.00256 * 359.97438 * 24 19 18 26 26 H 1.08998 * 109.46936 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47633 * 300.00550 * 1 2 3 28 28 H 1.09008 * 109.46827 * 60.00928 * 1 2 3 29 29 H 1.09001 * 109.47393 * 305.00390 * 4 2 1 30 30 H 1.08998 * 109.47408 * 185.00036 * 4 2 1 31 31 H 1.00901 * 110.99869 * 56.04956 * 5 4 2 32 32 H 1.09004 * 109.47031 * 299.99620 * 6 5 4 33 33 H 1.08995 * 109.47111 * 59.99900 * 6 5 4 34 34 H 0.97001 * 119.99132 * 180.02562 * 10 9 7 35 35 H 1.09002 * 109.46730 * 55.00366 * 15 2 1 36 36 H 1.08994 * 109.47589 * 175.00151 * 15 2 1 37 37 H 1.07998 * 120.00132 * 359.97438 * 17 16 15 38 38 H 1.07999 * 119.99796 * 180.23098 * 18 17 16 39 39 H 1.08991 * 109.47165 * 60.00263 * 21 20 19 40 40 H 1.09000 * 109.46744 * 179.97438 * 21 20 19 41 41 H 1.08999 * 109.47121 * 299.99555 * 21 20 19 42 42 H 1.09000 * 109.47425 * 60.00075 * 22 20 19 43 43 H 1.09000 * 109.47052 * 179.97438 * 22 20 19 44 44 H 1.08994 * 109.47358 * 300.00065 * 22 20 19 45 45 H 1.08999 * 109.47441 * 60.00430 * 23 20 19 46 46 H 1.09000 * 109.46977 * 180.02562 * 23 20 19 47 47 H 1.09007 * 109.47035 * 300.00296 * 23 20 19 48 48 H 1.08003 * 119.99938 * 179.97438 * 24 19 18 49 49 H 1.07997 * 120.00629 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 1.6515 0.0374 -2.4456 6 6 2.1250 -0.6273 -3.6671 7 6 1.7091 0.1784 -4.8708 8 1 1.1488 1.0926 -4.7414 9 6 2.0431 -0.2519 -6.1374 10 7 2.7251 -1.3654 -6.2950 11 14 1.5270 0.7464 -7.6294 12 1 2.5871 1.7342 -7.9549 13 1 1.3245 -0.1617 -8.7868 14 1 0.2593 1.4606 -7.3328 15 6 2.0399 -0.7211 1.2494 16 6 1.6411 0.0572 2.4767 17 6 2.4838 1.0293 2.9826 18 6 2.1157 1.7466 4.1055 19 6 0.9100 1.4847 4.7286 20 6 0.5116 2.2623 5.9565 21 6 0.3192 1.2995 7.1298 22 6 1.6093 3.2714 6.2994 23 6 -0.7983 3.0056 5.6866 24 6 0.0697 0.5089 4.2257 25 6 0.4350 -0.2044 3.0994 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 1.6055 -1.7198 -1.2951 30 1 3.1264 -0.7995 -1.2054 31 1 1.9883 0.9872 -2.3967 32 1 3.2119 -0.7051 -3.6404 33 1 1.6907 -1.6250 -3.7295 34 1 2.9604 -1.6679 -7.1861 35 1 1.6053 -1.7197 1.2953 36 1 3.1262 -0.7994 1.2058 37 1 3.4280 1.2307 2.4986 38 1 2.7723 2.5087 4.4986 39 1 1.2522 0.7700 7.3221 40 1 0.0315 1.8621 8.0180 41 1 -0.4629 0.5807 6.8855 42 1 1.7463 3.9574 5.4635 43 1 1.3210 3.8342 7.1872 44 1 2.5424 2.7419 6.4915 45 1 -1.5804 2.2868 5.4423 46 1 -1.0862 3.5685 6.5746 47 1 -0.6612 3.6916 4.8506 48 1 -0.8722 0.3039 4.7127 49 1 -0.2212 -0.9670 2.7067 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425988821.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:25 Heat of formation + Delta-G solvation = -29.825280 kcal Electronic energy + Delta-G solvation = -22440.925508 eV Core-core repulsion = 19365.453894 eV Total energy + Delta-G solvation = -3075.471614 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.89968 -38.66066 -37.21034 -35.46604 -33.95105 -31.96913 -31.16316 -28.83575 -28.19893 -28.07258 -27.54940 -25.74631 -23.56358 -23.18022 -22.61043 -20.99720 -20.01171 -18.53695 -17.39133 -16.78360 -16.49074 -16.17338 -15.95654 -15.53129 -15.41775 -15.08512 -14.77137 -14.60220 -14.42738 -14.23123 -14.13665 -13.65692 -13.44075 -13.18268 -13.06149 -12.89642 -12.78845 -12.67740 -12.62918 -12.52202 -12.51196 -12.22380 -12.10334 -11.91618 -11.74768 -11.68441 -11.56269 -11.41421 -11.29606 -11.11356 -10.66949 -9.72189 -9.30086 -9.09365 -8.23416 -6.34771 0.50468 0.58280 1.40451 1.42464 1.54388 2.39514 2.88687 3.09617 3.56780 3.71853 3.83924 3.90009 4.00665 4.15199 4.20865 4.23789 4.33897 4.38430 4.43202 4.56758 4.64108 4.70651 4.75093 4.80836 4.83865 4.87407 4.92269 4.93468 5.02782 5.04390 5.05716 5.09602 5.12275 5.15256 5.22537 5.26276 5.27110 5.33377 5.40277 5.44251 5.46505 5.55114 5.61288 5.66587 5.81373 5.84381 6.01605 6.20474 6.45063 6.72542 6.88906 7.36216 8.88269 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.034002 B = 0.002326 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.286496 B =12032.362506 C =12231.821754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.068 4.068 3 H 0.064 0.936 4 C 0.065 3.935 5 N -0.685 5.685 6 C 0.208 3.792 7 C -0.535 4.535 8 H 0.064 0.936 9 C -0.001 4.001 10 N -0.935 5.935 11 Si 0.975 3.025 12 H -0.271 1.271 13 H -0.281 1.281 14 H -0.265 1.265 15 C -0.071 4.071 16 C -0.086 4.086 17 C -0.128 4.128 18 C -0.128 4.128 19 C -0.081 4.081 20 C -0.030 4.030 21 C -0.136 4.136 22 C -0.143 4.143 23 C -0.137 4.137 24 C -0.121 4.121 25 C -0.120 4.120 26 H 0.049 0.951 27 H 0.060 0.940 28 H 0.046 0.954 29 H 0.056 0.944 30 H 0.015 0.985 31 H 0.333 0.667 32 H -0.041 1.041 33 H -0.002 1.002 34 H 0.265 0.735 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.124 0.876 38 H 0.136 0.864 39 H 0.050 0.950 40 H 0.069 0.931 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.068 0.932 44 H 0.058 0.942 45 H 0.056 0.944 46 H 0.069 0.931 47 H 0.047 0.953 48 H 0.131 0.869 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.127 7.041 28.868 30.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.087 4.087 3 H 0.082 0.918 4 C -0.065 4.065 5 N -0.316 5.316 6 C 0.081 3.919 7 C -0.574 4.574 8 H 0.082 0.918 9 C -0.199 4.199 10 N -0.575 5.575 11 Si 0.799 3.201 12 H -0.196 1.196 13 H -0.207 1.207 14 H -0.189 1.189 15 C -0.109 4.109 16 C -0.086 4.086 17 C -0.146 4.146 18 C -0.146 4.146 19 C -0.081 4.081 20 C -0.030 4.030 21 C -0.193 4.193 22 C -0.200 4.200 23 C -0.194 4.194 24 C -0.139 4.139 25 C -0.138 4.138 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.033 0.967 31 H 0.150 0.850 32 H -0.024 1.024 33 H 0.016 0.984 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.141 0.859 38 H 0.154 0.846 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.087 0.913 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.088 0.912 47 H 0.067 0.933 48 H 0.149 0.851 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.688 6.634 28.708 29.835 hybrid contribution 1.046 0.131 -1.209 1.604 sum -3.642 6.764 27.498 28.551 Atomic orbital electron populations 1.21683 0.94455 1.01426 1.01198 1.20959 0.96874 0.98839 0.91996 0.91779 1.22013 0.96499 0.97641 0.90331 1.60521 1.63982 1.05421 1.01638 1.19193 0.91007 0.94003 0.87736 1.21550 1.35123 1.09091 0.91594 0.91758 1.25997 0.94983 0.96352 1.02602 1.70100 1.40148 1.23508 1.23721 0.85297 0.78956 0.78178 0.77647 1.19599 1.20650 1.18885 1.20586 1.01161 0.98368 0.90747 1.19876 0.95081 0.97281 0.96383 1.21224 1.00007 0.96376 0.96980 1.21342 0.97057 1.00243 0.95917 1.20025 0.94415 0.96698 0.96989 1.19541 0.96415 0.94889 0.92155 1.21866 1.01709 0.98731 0.96977 1.21954 0.97903 0.98357 1.01815 1.21884 0.95681 1.00018 1.01865 1.21130 1.00047 0.96300 0.96410 1.21191 0.96206 1.00441 0.95960 0.93163 0.92131 0.93442 0.92561 0.96669 0.85014 1.02367 0.98364 0.92601 0.90584 0.90951 0.85850 0.84642 0.93054 0.91220 0.92428 0.92568 0.91343 0.92294 0.92448 0.91177 0.93336 0.85078 0.85581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.69 8.65 71.98 0.62 -3.07 16 2 C -0.07 -1.93 2.52 -10.80 -0.03 -1.96 16 3 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 4 C 0.06 2.35 5.07 86.30 0.44 2.79 16 5 N -0.69 -30.43 5.94 -517.93 -3.08 -33.51 16 6 C 0.21 11.54 5.44 85.56 0.47 12.01 16 7 C -0.54 -31.28 9.32 25.60 0.24 -31.04 16 8 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 9 C 0.00 -0.08 5.46 84.66 0.46 0.39 16 10 N -0.93 -57.47 13.29 21.45 0.28 -57.18 16 11 Si 0.98 44.96 29.54 68.60 2.03 46.98 16 12 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 13 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 14 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 15 C -0.07 -1.68 4.84 29.85 0.14 -1.53 16 16 C -0.09 -1.93 4.71 -19.86 -0.09 -2.03 16 17 C -0.13 -2.74 9.70 22.27 0.22 -2.52 16 18 C -0.13 -2.44 8.98 22.27 0.20 -2.24 16 19 C -0.08 -1.45 4.76 -19.86 -0.09 -1.55 16 20 C -0.03 -0.40 0.85 -52.93 -0.05 -0.45 16 21 C -0.14 -1.58 8.29 71.98 0.60 -0.99 16 22 C -0.14 -1.68 7.13 71.98 0.51 -1.17 16 23 C -0.14 -1.74 8.29 71.98 0.60 -1.14 16 24 C -0.12 -2.25 8.71 22.27 0.19 -2.06 16 25 C -0.12 -2.49 7.96 22.27 0.18 -2.32 16 26 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.06 1.53 6.26 -2.39 -0.01 1.51 16 28 H 0.05 1.55 7.75 -2.38 -0.02 1.53 16 29 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.33 14.09 8.72 -89.69 -0.78 13.31 16 32 H -0.04 -2.45 8.14 -2.39 -0.02 -2.47 16 33 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 34 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 35 H 0.08 1.73 8.09 -2.39 -0.02 1.71 16 36 H 0.07 1.66 8.08 -2.39 -0.02 1.64 16 37 H 0.12 2.44 8.06 -2.91 -0.02 2.41 16 38 H 0.14 2.13 5.90 -2.91 -0.02 2.12 16 39 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.06 0.67 7.39 -2.39 -0.02 0.65 16 42 H 0.06 0.70 7.51 -2.39 -0.02 0.68 16 43 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.06 0.69 7.51 -2.39 -0.02 0.67 16 45 H 0.06 0.72 7.39 -2.39 -0.02 0.70 16 46 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 48 H 0.13 1.99 7.10 -2.91 -0.02 1.97 16 49 H 0.13 2.40 8.04 -2.91 -0.02 2.38 16 Total: -1.00 -64.94 384.27 3.94 -61.00 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: 0.10 Total: 21.59 kcal Atomic # 6 Polarization: -43.49 SS G_CDS: 4.60 Total: -38.88 kcal Atomic # 7 Polarization: -87.90 SS G_CDS: -2.79 Total: -90.69 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -64.94 3.94 -61.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425988821.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.170 kcal (2) G-P(sol) polarization free energy of solvation -64.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds