Wall clock time and date at job start Tue Mar 31 2020 06:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 109.47312 * 2 1 4 4 C 1.53001 * 109.46734 * 120.00083 * 2 1 3 5 5 N 1.46895 * 109.47247 * 294.99670 * 4 2 1 6 6 C 1.46903 * 110.99992 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.46836 * 180.02562 * 6 5 4 8 8 H 1.08001 * 120.00758 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00008 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99637 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00401 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46971 * 90.00331 * 11 9 7 13 13 H 1.48496 * 109.47485 * 210.00643 * 11 9 7 14 14 H 1.48503 * 109.47112 * 330.00295 * 11 9 7 15 15 C 1.52996 * 109.47081 * 239.99714 * 2 1 3 16 16 C 1.50702 * 109.47203 * 65.00397 * 15 2 1 17 17 C 1.38234 * 119.99895 * 269.72772 * 16 15 2 18 18 C 1.38240 * 120.00062 * 180.32314 * 17 16 15 19 19 C 1.38235 * 119.99708 * 359.94741 * 18 17 16 20 20 C 1.50704 * 119.99518 * 180.02562 * 19 18 17 21 21 C 1.52999 * 109.46560 * 240.01939 * 20 19 18 22 22 C 1.52997 * 109.47133 * 0.02562 * 20 19 18 23 23 C 1.52997 * 109.46934 * 120.02224 * 20 19 18 24 24 C 1.38234 * 120.00204 * 0.02562 * 19 18 17 25 25 C 1.38230 * 119.99885 * 0.02562 * 24 19 18 26 26 H 1.09001 * 109.47493 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47128 * 300.00096 * 1 2 3 28 28 H 1.09001 * 109.47313 * 59.99757 * 1 2 3 29 29 H 1.09003 * 109.47262 * 54.99657 * 4 2 1 30 30 H 1.09008 * 109.46910 * 174.99745 * 4 2 1 31 31 H 1.00897 * 111.00094 * 303.95338 * 5 4 2 32 32 H 1.08997 * 109.46836 * 299.99637 * 6 5 4 33 33 H 1.09001 * 109.47346 * 59.99909 * 6 5 4 34 34 H 0.97005 * 119.99938 * 179.97438 * 10 9 7 35 35 H 1.09003 * 109.47252 * 305.00575 * 15 2 1 36 36 H 1.09001 * 109.47630 * 185.00629 * 15 2 1 37 37 H 1.08001 * 120.00279 * 0.27436 * 17 16 15 38 38 H 1.07997 * 119.99868 * 179.97438 * 18 17 16 39 39 H 1.08997 * 109.47500 * 60.00081 * 21 20 19 40 40 H 1.08999 * 109.46956 * 180.02562 * 21 20 19 41 41 H 1.08994 * 109.47499 * 300.00053 * 21 20 19 42 42 H 1.09001 * 109.47229 * 60.00965 * 22 20 19 43 43 H 1.09007 * 109.46988 * 180.02562 * 22 20 19 44 44 H 1.08997 * 109.47601 * 299.99752 * 22 20 19 45 45 H 1.09000 * 109.47416 * 60.00252 * 23 20 19 46 46 H 1.08999 * 109.46939 * 179.97438 * 23 20 19 47 47 H 1.08993 * 109.47194 * 299.99653 * 23 20 19 48 48 H 1.07992 * 119.99701 * 179.97438 * 24 19 18 49 49 H 1.08000 * 120.00356 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.6513 0.0374 2.4456 6 6 2.1257 -0.6266 3.6672 7 6 1.7086 0.1786 4.8708 8 1 1.1477 1.0924 4.7414 9 6 2.0431 -0.2513 6.1374 10 7 2.7266 -1.3639 6.2951 11 14 1.5268 0.7470 7.6294 12 1 0.1936 0.2877 8.0951 13 1 2.5214 0.5629 8.7166 14 1 1.4550 2.1842 7.2626 15 6 2.0400 -0.7213 -1.2492 16 6 1.6414 0.0570 -2.4766 17 6 0.4382 -0.2089 -3.1030 18 6 0.0755 0.5004 -4.2328 19 6 0.9157 1.4763 -4.7354 20 6 0.5201 2.2499 -5.9668 21 6 1.5642 2.0315 -7.0635 22 6 -0.8450 1.7638 -6.4578 23 6 0.4394 3.7399 -5.6288 24 6 2.1187 1.7426 -4.1087 25 6 2.4817 1.0326 -2.9796 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.6052 -1.7198 1.2952 30 1 3.1263 -0.7996 1.2056 31 1 1.9882 0.9872 2.3967 32 1 1.6919 -1.6246 3.7300 33 1 3.2126 -0.7039 3.6401 34 1 2.9623 -1.6662 7.1862 35 1 1.6053 -1.7198 -1.2951 36 1 3.1263 -0.7997 -1.2056 37 1 -0.2183 -0.9713 -2.7103 38 1 -0.8643 0.2924 -4.7224 39 1 1.6218 0.9700 -7.3042 40 1 1.2784 2.5914 -7.9540 41 1 2.5367 2.3778 -6.7136 42 1 -1.5888 1.9196 -5.6764 43 1 -1.1309 2.3231 -7.3487 44 1 -0.7876 0.7023 -6.6986 45 1 1.4119 4.0864 -5.2790 46 1 0.1537 4.2995 -6.5195 47 1 -0.3044 3.8955 -4.8475 48 1 2.7752 2.5047 -4.5016 49 1 3.4217 1.2402 -2.4901 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425988825.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:29 Heat of formation + Delta-G solvation = -14.975686 kcal Electronic energy + Delta-G solvation = -22438.302949 eV Core-core repulsion = 19363.475262 eV Total energy + Delta-G solvation = -3074.827688 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.12581 -37.60094 -36.02303 -33.79316 -32.09859 -31.19089 -30.05182 -27.66955 -27.53521 -26.92501 -26.48515 -24.16272 -22.38706 -22.04945 -21.16868 -19.77079 -19.32589 -16.67102 -16.33147 -15.58172 -15.09471 -14.82293 -14.65398 -14.53008 -14.39916 -14.04138 -13.90831 -13.59086 -13.47637 -12.92170 -12.81957 -12.41333 -12.34119 -12.13819 -12.02318 -11.94539 -11.77229 -11.58934 -11.35553 -11.31307 -11.20074 -10.96204 -10.81734 -10.76526 -10.62858 -10.52966 -10.33593 -10.26399 -9.80989 -9.14641 -8.91078 -8.46943 -8.45103 -7.22888 -6.01181 -4.02926 1.32337 1.39123 3.33536 3.39003 3.42995 3.70741 4.34867 4.44708 4.48093 4.71295 4.82655 4.88381 4.97591 5.02779 5.19515 5.22272 5.27497 5.31891 5.34674 5.41088 5.45949 5.48260 5.51995 5.57721 5.60644 5.70890 5.74272 5.76651 5.81124 5.94907 5.96482 6.01148 6.03888 6.08992 6.10184 6.23347 6.35360 6.41779 6.45474 6.56925 6.63909 6.73017 6.80610 7.00303 7.29345 7.45847 7.81385 8.16118 8.44028 8.65860 9.06691 9.61861 11.09971 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.034116 B = 0.002324 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.542089 B =12043.689974 C =12240.555503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.080 4.080 3 H 0.065 0.935 4 C 0.064 3.936 5 N -0.688 5.688 6 C 0.194 3.806 7 C -0.513 4.513 8 H 0.062 0.938 9 C 0.054 3.946 10 N -0.899 5.899 11 Si 0.899 3.101 12 H -0.280 1.280 13 H -0.287 1.287 14 H -0.274 1.274 15 C -0.079 4.079 16 C -0.072 4.072 17 C -0.112 4.112 18 C -0.121 4.121 19 C -0.081 4.081 20 C -0.029 4.029 21 C -0.138 4.138 22 C -0.144 4.144 23 C -0.138 4.138 24 C -0.115 4.115 25 C -0.117 4.117 26 H 0.047 0.953 27 H 0.069 0.931 28 H 0.044 0.956 29 H 0.063 0.937 30 H 0.016 0.984 31 H 0.327 0.673 32 H 0.027 0.973 33 H -0.015 1.015 34 H 0.261 0.739 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.056 0.944 46 H 0.056 0.944 47 H 0.057 0.943 48 H 0.116 0.884 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.376 5.684 -27.679 28.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.099 4.099 3 H 0.083 0.917 4 C -0.066 4.066 5 N -0.318 5.318 6 C 0.067 3.933 7 C -0.551 4.551 8 H 0.080 0.920 9 C -0.147 4.147 10 N -0.538 5.538 11 Si 0.727 3.273 12 H -0.206 1.206 13 H -0.213 1.213 14 H -0.199 1.199 15 C -0.117 4.117 16 C -0.072 4.072 17 C -0.130 4.130 18 C -0.139 4.139 19 C -0.081 4.081 20 C -0.029 4.029 21 C -0.195 4.195 22 C -0.201 4.201 23 C -0.196 4.196 24 C -0.133 4.133 25 C -0.135 4.135 26 H 0.066 0.934 27 H 0.088 0.912 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.034 0.966 31 H 0.143 0.857 32 H 0.045 0.955 33 H 0.003 0.997 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.075 0.925 47 H 0.076 0.924 48 H 0.134 0.866 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.925 5.275 -27.492 28.267 hybrid contribution 0.803 0.559 0.931 1.351 sum -3.122 5.834 -26.560 27.372 Atomic orbital electron populations 1.21756 0.94671 1.01385 1.01618 1.21092 0.96866 0.99181 0.92759 0.91656 1.21934 0.96431 0.97901 0.90368 1.60646 1.64148 1.05071 1.01952 1.19541 0.92940 0.95131 0.85679 1.21200 1.34661 1.08777 0.90488 0.91992 1.25005 0.95251 0.95279 0.99168 1.69970 1.39190 1.22005 1.22657 0.86478 0.78243 0.80403 0.82146 1.20621 1.21328 1.19865 1.20709 1.01024 0.98362 0.91601 1.19920 0.94405 0.96577 0.96261 1.21074 0.96305 1.00100 0.95528 1.21132 0.99683 0.96439 0.96658 1.19722 0.94824 0.96998 0.96544 1.19479 0.95760 0.94938 0.92733 1.21882 0.98297 1.01802 0.97496 1.21957 0.95941 1.01195 1.00973 1.21888 1.02192 0.94052 1.01427 1.20894 0.96418 0.99883 0.96073 1.21032 0.99763 0.96282 0.96377 0.93410 0.91220 0.93652 0.91891 0.96623 0.85714 0.95524 0.99742 0.92953 0.91019 0.91250 0.86151 0.85975 0.92553 0.92517 0.92476 0.92207 0.92534 0.92313 0.92450 0.92518 0.92411 0.86566 0.86282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 8.66 37.16 0.32 -1.66 16 2 C -0.08 -1.16 2.52 -90.62 -0.23 -1.39 16 3 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 4 C 0.06 1.14 5.07 -3.83 -0.02 1.12 16 5 N -0.69 -14.99 5.94 -115.06 -0.68 -15.68 16 6 C 0.19 5.19 5.44 -4.97 -0.03 5.17 16 7 C -0.51 -14.79 9.32 -34.44 -0.32 -15.11 16 8 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 9 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 10 N -0.90 -27.25 13.29 55.43 0.74 -26.52 16 11 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 15 C -0.08 -0.97 4.84 -27.88 -0.13 -1.10 16 16 C -0.07 -0.84 4.70 -104.62 -0.49 -1.33 16 17 C -0.11 -1.24 7.98 -39.58 -0.32 -1.55 16 18 C -0.12 -1.23 8.98 -39.58 -0.36 -1.58 16 19 C -0.08 -0.79 4.76 -104.62 -0.50 -1.29 16 20 C -0.03 -0.22 0.85 -155.66 -0.13 -0.36 16 21 C -0.14 -0.95 8.29 37.16 0.31 -0.64 16 22 C -0.14 -0.98 7.13 37.16 0.26 -0.71 16 23 C -0.14 -1.02 8.29 37.16 0.31 -0.71 16 24 C -0.11 -1.17 8.71 -39.59 -0.34 -1.51 16 25 C -0.12 -1.30 9.70 -39.59 -0.38 -1.69 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 1.15 7.75 -51.93 -0.40 0.74 16 28 H 0.04 0.60 6.28 -51.93 -0.33 0.27 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.02 0.28 8.14 -51.92 -0.42 -0.14 16 31 H 0.33 6.85 8.72 -39.29 -0.34 6.51 16 32 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 33 H -0.02 -0.43 8.14 -51.93 -0.42 -0.86 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 36 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 37 H 0.12 1.23 8.05 -52.49 -0.42 0.81 16 38 H 0.12 1.04 5.90 -52.49 -0.31 0.73 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.06 0.39 7.39 -51.93 -0.38 0.01 16 42 H 0.06 0.42 7.51 -51.93 -0.39 0.03 16 43 H 0.06 0.33 8.14 -51.92 -0.42 -0.09 16 44 H 0.06 0.39 7.51 -51.93 -0.39 0.00 16 45 H 0.06 0.42 7.39 -51.93 -0.38 0.04 16 46 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.12 1.01 7.10 -52.49 -0.37 0.63 16 49 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 384.31 15.07 5.79 5.79 Total: -1.00 -30.35 384.31 -10.51 -40.86 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -9.18 Total: 1.45 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: -2.15 Total: -22.87 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: 0.05 Total: -42.19 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.35 -10.51 -40.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425988825.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.886 kcal (2) G-P(sol) polarization free energy of solvation -30.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds