Wall clock time and date at job start Tue Mar 31 2020 06:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 109.47312 * 2 1 4 4 C 1.53001 * 109.46734 * 120.00083 * 2 1 3 5 5 N 1.46895 * 109.47247 * 294.99670 * 4 2 1 6 6 C 1.46903 * 110.99992 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.46836 * 180.02562 * 6 5 4 8 8 H 1.08001 * 120.00758 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00008 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99637 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00401 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46971 * 90.00331 * 11 9 7 13 13 H 1.48496 * 109.47485 * 210.00643 * 11 9 7 14 14 H 1.48503 * 109.47112 * 330.00295 * 11 9 7 15 15 C 1.52996 * 109.47081 * 239.99714 * 2 1 3 16 16 C 1.50702 * 109.47203 * 65.00397 * 15 2 1 17 17 C 1.38234 * 119.99895 * 269.72772 * 16 15 2 18 18 C 1.38240 * 120.00062 * 180.32314 * 17 16 15 19 19 C 1.38235 * 119.99708 * 359.94741 * 18 17 16 20 20 C 1.50704 * 119.99518 * 180.02562 * 19 18 17 21 21 C 1.52999 * 109.46560 * 240.01939 * 20 19 18 22 22 C 1.52997 * 109.47133 * 0.02562 * 20 19 18 23 23 C 1.52997 * 109.46934 * 120.02224 * 20 19 18 24 24 C 1.38234 * 120.00204 * 0.02562 * 19 18 17 25 25 C 1.38230 * 119.99885 * 0.02562 * 24 19 18 26 26 H 1.09001 * 109.47493 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47128 * 300.00096 * 1 2 3 28 28 H 1.09001 * 109.47313 * 59.99757 * 1 2 3 29 29 H 1.09003 * 109.47262 * 54.99657 * 4 2 1 30 30 H 1.09008 * 109.46910 * 174.99745 * 4 2 1 31 31 H 1.00897 * 111.00094 * 303.95338 * 5 4 2 32 32 H 1.08997 * 109.46836 * 299.99637 * 6 5 4 33 33 H 1.09001 * 109.47346 * 59.99909 * 6 5 4 34 34 H 0.97005 * 119.99938 * 179.97438 * 10 9 7 35 35 H 1.09003 * 109.47252 * 305.00575 * 15 2 1 36 36 H 1.09001 * 109.47630 * 185.00629 * 15 2 1 37 37 H 1.08001 * 120.00279 * 0.27436 * 17 16 15 38 38 H 1.07997 * 119.99868 * 179.97438 * 18 17 16 39 39 H 1.08997 * 109.47500 * 60.00081 * 21 20 19 40 40 H 1.08999 * 109.46956 * 180.02562 * 21 20 19 41 41 H 1.08994 * 109.47499 * 300.00053 * 21 20 19 42 42 H 1.09001 * 109.47229 * 60.00965 * 22 20 19 43 43 H 1.09007 * 109.46988 * 180.02562 * 22 20 19 44 44 H 1.08997 * 109.47601 * 299.99752 * 22 20 19 45 45 H 1.09000 * 109.47416 * 60.00252 * 23 20 19 46 46 H 1.08999 * 109.46939 * 179.97438 * 23 20 19 47 47 H 1.08993 * 109.47194 * 299.99653 * 23 20 19 48 48 H 1.07992 * 119.99701 * 179.97438 * 24 19 18 49 49 H 1.08000 * 120.00356 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.6513 0.0374 2.4456 6 6 2.1257 -0.6266 3.6672 7 6 1.7086 0.1786 4.8708 8 1 1.1477 1.0924 4.7414 9 6 2.0431 -0.2513 6.1374 10 7 2.7266 -1.3639 6.2951 11 14 1.5268 0.7470 7.6294 12 1 0.1936 0.2877 8.0951 13 1 2.5214 0.5629 8.7166 14 1 1.4550 2.1842 7.2626 15 6 2.0400 -0.7213 -1.2492 16 6 1.6414 0.0570 -2.4766 17 6 0.4382 -0.2089 -3.1030 18 6 0.0755 0.5004 -4.2328 19 6 0.9157 1.4763 -4.7354 20 6 0.5201 2.2499 -5.9668 21 6 1.5642 2.0315 -7.0635 22 6 -0.8450 1.7638 -6.4578 23 6 0.4394 3.7399 -5.6288 24 6 2.1187 1.7426 -4.1087 25 6 2.4817 1.0326 -2.9796 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.6052 -1.7198 1.2952 30 1 3.1263 -0.7996 1.2056 31 1 1.9882 0.9872 2.3967 32 1 1.6919 -1.6246 3.7300 33 1 3.2126 -0.7039 3.6401 34 1 2.9623 -1.6662 7.1862 35 1 1.6053 -1.7198 -1.2951 36 1 3.1263 -0.7997 -1.2056 37 1 -0.2183 -0.9713 -2.7103 38 1 -0.8643 0.2924 -4.7224 39 1 1.6218 0.9700 -7.3042 40 1 1.2784 2.5914 -7.9540 41 1 2.5367 2.3778 -6.7136 42 1 -1.5888 1.9196 -5.6764 43 1 -1.1309 2.3231 -7.3487 44 1 -0.7876 0.7023 -6.6986 45 1 1.4119 4.0864 -5.2790 46 1 0.1537 4.2995 -6.5195 47 1 -0.3044 3.8955 -4.8475 48 1 2.7752 2.5047 -4.5016 49 1 3.4217 1.2402 -2.4901 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425988825.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:28 Heat of formation + Delta-G solvation = -29.837558 kcal Electronic energy + Delta-G solvation = -22438.947408 eV Core-core repulsion = 19363.475262 eV Total energy + Delta-G solvation = -3075.472147 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.89962 -38.66063 -37.21108 -35.46681 -33.95175 -31.97049 -31.15826 -28.82702 -28.22954 -28.07622 -27.52305 -25.74878 -23.56235 -23.18133 -22.61350 -20.99553 -20.01035 -18.53677 -17.39443 -16.78102 -16.48605 -16.21132 -15.87340 -15.56263 -15.46439 -15.08385 -14.76063 -14.55380 -14.44816 -14.22412 -14.14167 -13.68299 -13.44381 -13.22145 -13.01620 -12.86451 -12.76989 -12.71887 -12.61728 -12.53114 -12.52160 -12.20176 -12.11524 -11.91777 -11.74876 -11.68336 -11.55962 -11.42215 -11.29544 -11.11334 -10.66712 -9.72338 -9.30013 -9.09514 -8.23378 -6.34771 0.50500 0.58227 1.40557 1.42739 1.53948 2.39479 2.88714 3.09637 3.56710 3.71923 3.83811 3.90025 4.00811 4.15294 4.21738 4.22515 4.34017 4.38717 4.43230 4.56883 4.63476 4.71392 4.74908 4.80498 4.83863 4.87067 4.92286 4.94107 5.02656 5.03933 5.05734 5.09705 5.12807 5.15189 5.22438 5.26129 5.27083 5.33351 5.40310 5.44466 5.46254 5.55177 5.61261 5.66567 5.81416 5.84398 6.01601 6.20467 6.44999 6.72540 6.88798 7.36219 8.88290 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.034116 B = 0.002324 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.542089 B =12043.689974 C =12240.555503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.068 4.068 3 H 0.064 0.936 4 C 0.065 3.935 5 N -0.685 5.685 6 C 0.208 3.792 7 C -0.535 4.535 8 H 0.064 0.936 9 C -0.001 4.001 10 N -0.935 5.935 11 Si 0.975 3.025 12 H -0.273 1.273 13 H -0.281 1.281 14 H -0.263 1.263 15 C -0.071 4.071 16 C -0.086 4.086 17 C -0.120 4.120 18 C -0.128 4.128 19 C -0.081 4.081 20 C -0.030 4.030 21 C -0.136 4.136 22 C -0.143 4.143 23 C -0.137 4.137 24 C -0.121 4.121 25 C -0.128 4.128 26 H 0.049 0.951 27 H 0.046 0.954 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.015 0.985 31 H 0.333 0.667 32 H -0.002 1.002 33 H -0.041 1.041 34 H 0.265 0.735 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.126 0.874 38 H 0.137 0.863 39 H 0.051 0.949 40 H 0.069 0.931 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.067 0.933 44 H 0.059 0.941 45 H 0.055 0.945 46 H 0.069 0.931 47 H 0.048 0.952 48 H 0.130 0.870 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.122 7.022 -28.890 30.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.087 4.087 3 H 0.082 0.918 4 C -0.065 4.065 5 N -0.315 5.315 6 C 0.080 3.920 7 C -0.573 4.573 8 H 0.083 0.917 9 C -0.199 4.199 10 N -0.575 5.575 11 Si 0.799 3.201 12 H -0.198 1.198 13 H -0.206 1.206 14 H -0.187 1.187 15 C -0.109 4.109 16 C -0.086 4.086 17 C -0.138 4.138 18 C -0.145 4.145 19 C -0.081 4.081 20 C -0.030 4.030 21 C -0.193 4.193 22 C -0.200 4.200 23 C -0.195 4.195 24 C -0.139 4.139 25 C -0.146 4.146 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.033 0.967 31 H 0.150 0.850 32 H 0.016 0.984 33 H -0.023 1.023 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.144 0.856 38 H 0.155 0.845 39 H 0.070 0.930 40 H 0.088 0.912 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.088 0.912 47 H 0.067 0.933 48 H 0.148 0.852 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.674 6.621 -28.730 29.851 hybrid contribution 1.044 0.129 1.213 1.605 sum -3.631 6.750 -27.517 28.564 Atomic orbital electron populations 1.21682 0.94452 1.01429 1.01197 1.20958 0.96877 0.98839 0.91997 0.91775 1.22016 0.96498 0.97643 0.90335 1.60530 1.63949 1.05421 1.01639 1.19195 0.91009 0.94008 0.87742 1.21550 1.35046 1.09164 0.91586 0.91750 1.25996 0.94953 0.96381 1.02600 1.70099 1.40049 1.23630 1.23709 0.85299 0.78006 0.79024 0.77757 1.19818 1.20616 1.18706 1.20587 1.01158 0.98367 0.90751 1.19872 0.95113 0.97226 0.96398 1.21221 0.96213 1.00458 0.95944 1.21368 1.00396 0.96332 0.96451 1.20025 0.94429 0.96687 0.96991 1.19540 0.96502 0.94870 0.92087 1.21868 0.98020 1.01728 0.97685 1.21953 0.95262 1.01431 1.01358 1.21881 1.01891 0.93910 1.01781 1.21101 0.96911 1.00051 0.95811 1.21195 1.00038 0.96417 0.96911 0.93160 0.93437 0.92138 0.92558 0.96673 0.85027 0.98379 1.02347 0.92601 0.90579 0.90950 0.85586 0.84496 0.93007 0.91213 0.92543 0.92482 0.91361 0.92234 0.92571 0.91166 0.93284 0.85231 0.85852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.69 8.66 71.98 0.62 -3.06 16 2 C -0.07 -1.93 2.52 -10.79 -0.03 -1.96 16 3 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 4 C 0.06 2.35 5.07 86.30 0.44 2.79 16 5 N -0.69 -30.41 5.94 -517.92 -3.08 -33.49 16 6 C 0.21 11.53 5.44 85.56 0.47 12.00 16 7 C -0.54 -31.27 9.32 25.60 0.24 -31.03 16 8 H 0.06 3.65 7.81 -2.91 -0.02 3.62 16 9 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 10 N -0.93 -57.48 13.29 21.45 0.28 -57.19 16 11 Si 0.98 44.96 29.54 68.60 2.03 46.98 16 12 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 13 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 14 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 15 C -0.07 -1.68 4.84 29.85 0.14 -1.53 16 16 C -0.09 -1.93 4.70 -19.87 -0.09 -2.02 16 17 C -0.12 -2.51 7.98 22.27 0.18 -2.33 16 18 C -0.13 -2.39 8.98 22.27 0.20 -2.19 16 19 C -0.08 -1.45 4.76 -19.86 -0.09 -1.55 16 20 C -0.03 -0.40 0.85 -52.93 -0.05 -0.45 16 21 C -0.14 -1.60 8.29 71.98 0.60 -1.00 16 22 C -0.14 -1.65 7.13 71.98 0.51 -1.13 16 23 C -0.14 -1.75 8.29 71.98 0.60 -1.16 16 24 C -0.12 -2.30 8.71 22.27 0.19 -2.10 16 25 C -0.13 -2.73 9.70 22.27 0.22 -2.51 16 26 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.05 1.55 7.75 -2.39 -0.02 1.53 16 28 H 0.06 1.52 6.28 -2.39 -0.01 1.51 16 29 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.02 0.55 8.14 -2.38 -0.02 0.54 16 31 H 0.33 14.09 8.72 -89.70 -0.78 13.31 16 32 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 33 H -0.04 -2.44 8.14 -2.39 -0.02 -2.46 16 34 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16 35 H 0.08 1.73 8.08 -2.39 -0.02 1.71 16 36 H 0.07 1.66 8.09 -2.39 -0.02 1.64 16 37 H 0.13 2.40 8.05 -2.91 -0.02 2.38 16 38 H 0.14 2.08 5.90 -2.91 -0.02 2.06 16 39 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.06 0.67 7.39 -2.39 -0.02 0.65 16 42 H 0.06 0.69 7.51 -2.39 -0.02 0.67 16 43 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 44 H 0.06 0.67 7.51 -2.39 -0.02 0.66 16 45 H 0.06 0.72 7.39 -2.39 -0.02 0.70 16 46 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.13 2.04 7.10 -2.91 -0.02 2.02 16 49 H 0.12 2.43 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -64.90 384.31 3.94 -60.96 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: 0.10 Total: 21.61 kcal Atomic # 6 Polarization: -43.47 SS G_CDS: 4.61 Total: -38.86 kcal Atomic # 7 Polarization: -87.89 SS G_CDS: -2.79 Total: -90.69 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -64.90 3.94 -60.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425988825.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.126 kcal (2) G-P(sol) polarization free energy of solvation -64.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds