Wall clock time and date at job start Tue Mar 31 2020 05:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52998 * 109.46941 * 2 1 4 4 C 1.52999 * 109.47534 * 305.15798 * 3 2 1 5 5 C 1.53007 * 109.46539 * 295.12300 * 4 3 2 6 6 C 1.53007 * 109.46815 * 65.15773 * 3 2 1 7 7 N 1.46897 * 109.47272 * 64.99618 * 6 3 2 8 8 C 1.46901 * 110.99904 * 66.04796 * 7 6 3 9 9 C 1.50697 * 109.46663 * 193.95308 * 8 7 6 10 10 H 1.08000 * 120.00679 * 359.97438 * 9 8 7 11 11 C 1.37880 * 119.99805 * 180.02562 * 9 8 7 12 12 N 1.31520 * 119.99912 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00163 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.47379 * 59.99889 * 13 11 9 15 15 H 1.48506 * 109.47207 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47017 * 299.99772 * 13 11 9 17 17 C 1.46903 * 111.00005 * 190.00073 * 7 6 3 18 18 C 1.50695 * 109.47411 * 169.99933 * 17 7 6 19 19 C 1.38236 * 119.99718 * 89.99896 * 18 17 7 20 20 C 1.38236 * 119.99771 * 179.72964 * 19 18 17 21 21 C 1.38234 * 120.00276 * 0.25453 * 20 19 18 22 22 C 1.50694 * 120.00553 * 180.02562 * 21 20 19 23 23 C 1.38238 * 119.99504 * 0.02562 * 21 20 19 24 24 C 1.38232 * 120.00555 * 359.95944 * 23 21 20 25 25 H 1.09005 * 109.46844 * 185.68571 * 1 2 3 26 26 H 1.09002 * 109.46658 * 305.68071 * 1 2 3 27 27 H 1.08997 * 109.46950 * 65.68306 * 1 2 3 28 28 H 1.09003 * 109.47035 * 240.00449 * 2 1 3 29 29 H 1.09002 * 109.47040 * 120.00699 * 2 1 3 30 30 H 1.09000 * 109.46716 * 185.14841 * 3 2 1 31 31 H 1.08996 * 109.47090 * 55.12162 * 4 3 2 32 32 H 1.08998 * 109.47109 * 175.12883 * 4 3 2 33 33 H 1.08999 * 109.47304 * 305.89053 * 5 4 3 34 34 H 1.09006 * 109.46914 * 65.89057 * 5 4 3 35 35 H 1.08998 * 109.46532 * 185.88595 * 5 4 3 36 36 H 1.09002 * 109.46568 * 304.99319 * 6 3 2 37 37 H 1.09003 * 109.47061 * 184.99968 * 6 3 2 38 38 H 1.08995 * 109.47147 * 313.95159 * 8 7 6 39 39 H 1.08996 * 109.47239 * 73.95389 * 8 7 6 40 40 H 0.96995 * 119.99717 * 179.97438 * 12 11 9 41 41 H 1.09003 * 109.47033 * 50.00233 * 17 7 6 42 42 H 1.09002 * 109.47175 * 290.00155 * 17 7 6 43 43 H 1.08000 * 120.00193 * 0.02562 * 19 18 17 44 44 H 1.08003 * 120.00096 * 180.27831 * 20 19 18 45 45 H 1.09005 * 109.47490 * 89.99507 * 22 21 20 46 46 H 1.09000 * 109.47666 * 210.00063 * 22 21 20 47 47 H 1.09002 * 109.46571 * 330.00118 * 22 21 20 48 48 H 1.08001 * 119.99695 * 179.97438 * 23 21 20 49 49 H 1.08000 * 120.00339 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4270 2.2003 -1.1793 5 6 1.9261 1.5917 -2.4914 6 6 1.6386 2.1253 1.3091 7 7 2.3228 1.4711 2.4324 8 6 3.7747 1.6820 2.3593 9 6 4.4680 0.7345 3.3041 10 1 3.8881 0.0450 3.8996 11 6 5.8427 0.7486 3.4090 12 7 6.5490 1.5886 2.6841 13 14 6.7022 -0.4253 4.5806 14 1 6.3858 -1.8252 4.1992 15 1 8.1699 -0.2115 4.5075 16 1 6.2340 -0.1721 5.9669 17 6 1.7872 1.9373 3.7185 18 6 2.3307 1.0775 4.8303 19 6 3.5116 1.4256 5.4591 20 6 4.0073 0.6399 6.4827 21 6 3.3249 -0.4967 6.8742 22 6 3.8649 -1.3530 7.9905 23 6 2.1470 -0.8480 6.2415 24 6 1.6511 -0.0622 5.2181 25 1 -0.3633 -1.0227 0.1018 26 1 -0.3633 0.5994 0.8348 27 1 -0.3633 0.4232 -0.9365 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5140 0.8899 30 1 3.1261 1.4438 -0.0922 31 1 0.3405 2.1252 -1.1341 32 1 1.7212 3.2486 -1.1300 33 1 3.0159 1.5714 -2.4911 34 1 1.5438 0.5755 -2.5891 35 1 1.5740 2.1944 -3.3285 36 1 0.5600 2.0456 1.4444 37 1 1.9235 3.1768 1.2727 38 1 4.1180 1.4963 1.3416 39 1 4.0073 2.7093 2.6394 40 1 7.5161 1.5987 2.7582 41 1 0.6994 1.8692 3.7052 42 1 2.0845 2.9732 3.8818 43 1 4.0444 2.3140 5.1537 44 1 4.9275 0.9143 6.9770 45 1 3.4632 -1.0050 8.9423 46 1 3.5696 -2.3897 7.8288 47 1 4.9525 -1.2835 8.0080 48 1 1.6141 -1.7362 6.5471 49 1 0.7307 -0.3364 4.7241 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000444230555.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:12 Heat of formation + Delta-G solvation = 14.578672 kcal Electronic energy + Delta-G solvation = -24513.394998 eV Core-core repulsion = 21439.848884 eV Total energy + Delta-G solvation = -3073.546114 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.08504 -37.80241 -35.38978 -32.57409 -32.17073 -30.76339 -30.06207 -28.45186 -27.69637 -26.15510 -23.67086 -23.39594 -22.69930 -21.81277 -20.74507 -19.57729 -18.29412 -16.58380 -15.49087 -15.27842 -15.11320 -14.66180 -14.49495 -14.25668 -14.09836 -13.60073 -13.22060 -12.87970 -12.78804 -12.58654 -12.56735 -12.16604 -12.02336 -11.79046 -11.73797 -11.57020 -11.44196 -11.39941 -11.01891 -10.91887 -10.78860 -10.60862 -10.56202 -10.24902 -10.01546 -9.96306 -9.84316 -9.70403 -9.45230 -9.15398 -8.41167 -7.86335 -7.35804 -7.20291 -6.02876 -3.91292 2.21564 2.39672 3.36672 3.40796 3.46762 4.42813 4.57233 5.01989 5.23940 5.32890 5.37180 5.45655 5.52059 5.53999 5.57582 5.66844 5.74328 5.77298 5.85693 5.87464 5.97852 6.01936 6.04101 6.07456 6.10630 6.16347 6.21715 6.24267 6.26883 6.27811 6.35743 6.41914 6.45032 6.60959 6.64201 6.71237 6.91278 6.92856 6.99244 7.05445 7.24045 7.33107 7.36006 7.47164 7.62954 7.87798 7.95410 8.13518 8.21686 8.57587 9.09564 9.61837 11.06751 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.016028 B = 0.005783 C = 0.004792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.510222 B = 4840.920733 C = 5841.096787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.109 4.109 3 C -0.084 4.084 4 C -0.121 4.121 5 C -0.149 4.149 6 C 0.061 3.939 7 N -0.529 5.529 8 C 0.187 3.813 9 C -0.488 4.488 10 H 0.084 0.916 11 C 0.058 3.942 12 N -0.896 5.896 13 Si 0.873 3.127 14 H -0.279 1.279 15 H -0.295 1.295 16 H -0.252 1.252 17 C 0.108 3.892 18 C -0.069 4.069 19 C -0.017 4.017 20 C -0.150 4.150 21 C -0.093 4.093 22 C -0.109 4.109 23 C -0.154 4.154 24 C -0.104 4.104 25 H 0.043 0.957 26 H 0.055 0.945 27 H 0.046 0.954 28 H 0.048 0.952 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.045 0.955 36 H 0.061 0.939 37 H 0.018 0.982 38 H 0.034 0.966 39 H -0.012 1.012 40 H 0.260 0.740 41 H 0.059 0.941 42 H 0.027 0.973 43 H 0.117 0.883 44 H 0.107 0.893 45 H 0.060 0.940 46 H 0.057 0.943 47 H 0.058 0.942 48 H 0.104 0.896 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.114 -0.646 0.199 10.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.147 4.147 3 C -0.103 4.103 4 C -0.159 4.159 5 C -0.207 4.207 6 C -0.067 4.067 7 N -0.253 5.253 8 C 0.062 3.938 9 C -0.525 4.525 10 H 0.102 0.898 11 C -0.144 4.144 12 N -0.535 5.535 13 Si 0.701 3.299 14 H -0.205 1.205 15 H -0.221 1.221 16 H -0.177 1.177 17 C -0.020 4.020 18 C -0.069 4.069 19 C -0.036 4.036 20 C -0.168 4.168 21 C -0.093 4.093 22 C -0.165 4.165 23 C -0.172 4.172 24 C -0.122 4.122 25 H 0.062 0.938 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.036 0.964 38 H 0.052 0.948 39 H 0.005 0.995 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.045 0.955 43 H 0.135 0.865 44 H 0.125 0.875 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.077 0.923 48 H 0.122 0.878 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -10.007 -1.082 0.109 10.066 hybrid contribution 1.048 0.184 0.393 1.134 sum -8.959 -0.898 0.502 9.018 Atomic orbital electron populations 1.21836 0.97152 1.00635 1.00910 1.21389 0.94739 0.96408 1.02147 1.21209 1.01054 0.95100 0.92890 1.21604 1.00358 0.99160 0.94730 1.21770 1.01385 1.00656 0.96869 1.22088 0.97960 0.94926 0.91767 1.62177 1.07372 1.56480 0.99255 1.19853 0.80776 0.95082 0.98058 1.21682 0.90974 1.18560 1.21312 0.89843 1.24924 0.97500 0.95655 0.96302 1.69970 1.06346 1.36838 1.40351 0.86968 0.77837 0.81800 0.83302 1.20498 1.22136 1.17650 1.20795 0.97219 0.94893 0.89072 1.19381 0.95704 0.96131 0.95719 1.20727 0.92676 0.99173 0.91000 1.20759 0.99745 0.96316 0.99984 1.19630 0.95640 0.96158 0.97853 1.20713 1.00682 0.98557 0.96587 1.20599 0.97158 1.00394 0.99044 1.20670 0.99848 0.94717 0.97007 0.93784 0.92644 0.93545 0.93341 0.90049 0.90369 0.92078 0.92729 0.92721 0.92714 0.93560 0.92101 0.96400 0.94778 0.99457 0.93058 0.92258 0.95514 0.86529 0.87461 0.92139 0.92372 0.92332 0.87785 0.87489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.11 37.16 0.34 -1.62 16 2 C -0.11 -1.71 5.28 -26.73 -0.14 -1.86 16 3 C -0.08 -1.36 2.11 -90.62 -0.19 -1.56 16 4 C -0.12 -1.62 5.07 -26.73 -0.14 -1.76 16 5 C -0.15 -1.85 9.52 37.16 0.35 -1.50 16 6 C 0.06 1.05 4.22 -3.82 -0.02 1.03 16 7 N -0.53 -10.69 3.93 -237.52 -0.93 -11.62 16 8 C 0.19 4.58 4.53 -4.98 -0.02 4.56 16 9 C -0.49 -12.72 5.37 -34.44 -0.19 -12.91 16 10 H 0.08 2.21 4.71 -52.49 -0.25 1.96 16 11 C 0.06 1.57 5.44 -17.82 -0.10 1.48 16 12 N -0.90 -25.77 13.29 55.43 0.74 -25.03 16 13 Si 0.87 21.20 28.32 -169.99 -4.81 16.38 16 14 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 15 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 16 H -0.25 -5.68 4.88 56.52 0.28 -5.40 16 17 C 0.11 2.03 5.11 -4.98 -0.03 2.01 16 18 C -0.07 -1.36 3.47 -104.63 -0.36 -1.72 16 19 C -0.02 -0.35 5.87 -39.58 -0.23 -0.59 16 20 C -0.15 -2.99 7.18 -39.58 -0.28 -3.28 16 21 C -0.09 -1.70 5.88 -104.63 -0.62 -2.32 16 22 C -0.11 -1.64 10.01 36.00 0.36 -1.28 16 23 C -0.15 -2.74 9.70 -39.58 -0.38 -3.12 16 24 C -0.10 -1.91 9.49 -39.58 -0.38 -2.29 16 25 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.75 6.23 -51.93 -0.32 0.42 16 27 H 0.05 0.55 6.58 -51.93 -0.34 0.21 16 28 H 0.05 0.73 6.96 -51.93 -0.36 0.36 16 29 H 0.08 1.52 7.62 -51.93 -0.40 1.12 16 30 H 0.08 1.51 6.12 -51.93 -0.32 1.20 16 31 H 0.06 0.75 6.19 -51.93 -0.32 0.43 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.65 6.98 -51.93 -0.36 0.29 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.94 6.03 -51.93 -0.31 0.63 16 37 H 0.02 0.32 8.12 -51.93 -0.42 -0.10 16 38 H 0.03 0.91 5.91 -51.93 -0.31 0.60 16 39 H -0.01 -0.33 7.99 -51.93 -0.41 -0.74 16 40 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 41 H 0.06 0.98 7.88 -51.93 -0.41 0.57 16 42 H 0.03 0.51 7.96 -51.93 -0.41 0.10 16 43 H 0.12 2.61 7.68 -52.49 -0.40 2.21 16 44 H 0.11 2.10 7.14 -52.48 -0.37 1.73 16 45 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.06 0.80 8.09 -51.93 -0.42 0.38 16 47 H 0.06 0.89 8.09 -51.93 -0.42 0.47 16 48 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 49 H 0.11 1.79 8.06 -52.49 -0.42 1.36 16 LS Contribution 363.38 15.07 5.48 5.48 Total: -1.00 -27.57 363.38 -10.34 -37.91 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -8.79 Total: 3.60 kcal Atomic # 6 Polarization: -24.70 SS G_CDS: -2.02 Total: -26.71 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: -0.20 Total: -36.66 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.81 Total: 16.38 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -27.57 -10.34 -37.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444230555.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.489 kcal (2) G-P(sol) polarization free energy of solvation -27.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds