Wall clock time and date at job start Tue Mar 31 2020 05:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52998 * 109.46941 * 2 1 4 4 C 1.52999 * 109.47534 * 305.15798 * 3 2 1 5 5 C 1.53007 * 109.46539 * 295.12300 * 4 3 2 6 6 C 1.53007 * 109.46815 * 65.15773 * 3 2 1 7 7 N 1.46897 * 109.47272 * 64.99618 * 6 3 2 8 8 C 1.46901 * 110.99904 * 66.04796 * 7 6 3 9 9 C 1.50697 * 109.46663 * 193.95308 * 8 7 6 10 10 H 1.08000 * 120.00679 * 359.97438 * 9 8 7 11 11 C 1.37880 * 119.99805 * 180.02562 * 9 8 7 12 12 N 1.31520 * 119.99912 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00163 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.47379 * 59.99889 * 13 11 9 15 15 H 1.48506 * 109.47207 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47017 * 299.99772 * 13 11 9 17 17 C 1.46903 * 111.00005 * 190.00073 * 7 6 3 18 18 C 1.50695 * 109.47411 * 169.99933 * 17 7 6 19 19 C 1.38236 * 119.99718 * 89.99896 * 18 17 7 20 20 C 1.38236 * 119.99771 * 179.72964 * 19 18 17 21 21 C 1.38234 * 120.00276 * 0.25453 * 20 19 18 22 22 C 1.50694 * 120.00553 * 180.02562 * 21 20 19 23 23 C 1.38238 * 119.99504 * 0.02562 * 21 20 19 24 24 C 1.38232 * 120.00555 * 359.95944 * 23 21 20 25 25 H 1.09005 * 109.46844 * 185.68571 * 1 2 3 26 26 H 1.09002 * 109.46658 * 305.68071 * 1 2 3 27 27 H 1.08997 * 109.46950 * 65.68306 * 1 2 3 28 28 H 1.09003 * 109.47035 * 240.00449 * 2 1 3 29 29 H 1.09002 * 109.47040 * 120.00699 * 2 1 3 30 30 H 1.09000 * 109.46716 * 185.14841 * 3 2 1 31 31 H 1.08996 * 109.47090 * 55.12162 * 4 3 2 32 32 H 1.08998 * 109.47109 * 175.12883 * 4 3 2 33 33 H 1.08999 * 109.47304 * 305.89053 * 5 4 3 34 34 H 1.09006 * 109.46914 * 65.89057 * 5 4 3 35 35 H 1.08998 * 109.46532 * 185.88595 * 5 4 3 36 36 H 1.09002 * 109.46568 * 304.99319 * 6 3 2 37 37 H 1.09003 * 109.47061 * 184.99968 * 6 3 2 38 38 H 1.08995 * 109.47147 * 313.95159 * 8 7 6 39 39 H 1.08996 * 109.47239 * 73.95389 * 8 7 6 40 40 H 0.96995 * 119.99717 * 179.97438 * 12 11 9 41 41 H 1.09003 * 109.47033 * 50.00233 * 17 7 6 42 42 H 1.09002 * 109.47175 * 290.00155 * 17 7 6 43 43 H 1.08000 * 120.00193 * 0.02562 * 19 18 17 44 44 H 1.08003 * 120.00096 * 180.27831 * 20 19 18 45 45 H 1.09005 * 109.47490 * 89.99507 * 22 21 20 46 46 H 1.09000 * 109.47666 * 210.00063 * 22 21 20 47 47 H 1.09002 * 109.46571 * 330.00118 * 22 21 20 48 48 H 1.08001 * 119.99695 * 179.97438 * 23 21 20 49 49 H 1.08000 * 120.00339 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4270 2.2003 -1.1793 5 6 1.9261 1.5917 -2.4914 6 6 1.6386 2.1253 1.3091 7 7 2.3228 1.4711 2.4324 8 6 3.7747 1.6820 2.3593 9 6 4.4680 0.7345 3.3041 10 1 3.8881 0.0450 3.8996 11 6 5.8427 0.7486 3.4090 12 7 6.5490 1.5886 2.6841 13 14 6.7022 -0.4253 4.5806 14 1 6.3858 -1.8252 4.1992 15 1 8.1699 -0.2115 4.5075 16 1 6.2340 -0.1721 5.9669 17 6 1.7872 1.9373 3.7185 18 6 2.3307 1.0775 4.8303 19 6 3.5116 1.4256 5.4591 20 6 4.0073 0.6399 6.4827 21 6 3.3249 -0.4967 6.8742 22 6 3.8649 -1.3530 7.9905 23 6 2.1470 -0.8480 6.2415 24 6 1.6511 -0.0622 5.2181 25 1 -0.3633 -1.0227 0.1018 26 1 -0.3633 0.5994 0.8348 27 1 -0.3633 0.4232 -0.9365 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5140 0.8899 30 1 3.1261 1.4438 -0.0922 31 1 0.3405 2.1252 -1.1341 32 1 1.7212 3.2486 -1.1300 33 1 3.0159 1.5714 -2.4911 34 1 1.5438 0.5755 -2.5891 35 1 1.5740 2.1944 -3.3285 36 1 0.5600 2.0456 1.4444 37 1 1.9235 3.1768 1.2727 38 1 4.1180 1.4963 1.3416 39 1 4.0073 2.7093 2.6394 40 1 7.5161 1.5987 2.7582 41 1 0.6994 1.8692 3.7052 42 1 2.0845 2.9732 3.8818 43 1 4.0444 2.3140 5.1537 44 1 4.9275 0.9143 6.9770 45 1 3.4632 -1.0050 8.9423 46 1 3.5696 -2.3897 7.8288 47 1 4.9525 -1.2835 8.0080 48 1 1.6141 -1.7362 6.5471 49 1 0.7307 -0.3364 4.7241 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000444230555.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:11 Heat of formation + Delta-G solvation = 1.592933 kcal Electronic energy + Delta-G solvation = -24513.958102 eV Core-core repulsion = 21439.848884 eV Total energy + Delta-G solvation = -3074.109218 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.62350 -39.19224 -36.86206 -34.59282 -33.58309 -31.87730 -31.60123 -29.77035 -29.57172 -27.56148 -25.14771 -24.92049 -24.08535 -23.32181 -22.25978 -21.12577 -19.63070 -18.58651 -17.05635 -16.73289 -16.55349 -16.24878 -15.96212 -15.84544 -15.57972 -15.11738 -14.55536 -14.42292 -14.17231 -14.02256 -13.80809 -13.68051 -13.48581 -13.28750 -13.09179 -13.04993 -12.83683 -12.74011 -12.61537 -12.44005 -12.34653 -12.16762 -11.92938 -11.81728 -11.52192 -11.35248 -11.19446 -11.14094 -11.02616 -10.96076 -10.48227 -9.40133 -8.97659 -8.87338 -8.13116 -6.06033 0.71603 0.87491 1.40770 1.41713 1.48210 2.44531 3.00067 3.27063 3.55646 3.96130 4.06925 4.12455 4.17149 4.22265 4.31419 4.41263 4.45387 4.46557 4.53438 4.66794 4.69283 4.74656 4.77870 4.81553 4.87309 4.88678 4.92552 4.98323 5.06635 5.07584 5.11410 5.12924 5.22461 5.25405 5.32757 5.38515 5.44074 5.48084 5.49350 5.50414 5.65672 5.77104 5.80447 5.83799 5.97109 6.07585 6.19534 6.42736 6.45863 6.73365 7.00108 7.51202 8.97367 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.016028 B = 0.005783 C = 0.004792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.510222 B = 4840.920733 C = 5841.096787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.104 4.104 3 C -0.081 4.081 4 C -0.114 4.114 5 C -0.148 4.148 6 C 0.061 3.939 7 N -0.528 5.528 8 C 0.207 3.793 9 C -0.478 4.478 10 H 0.084 0.916 11 C 0.010 3.990 12 N -0.937 5.937 13 Si 0.919 3.081 14 H -0.284 1.284 15 H -0.301 1.301 16 H -0.227 1.227 17 C 0.107 3.893 18 C -0.083 4.083 19 C -0.037 4.037 20 C -0.161 4.161 21 C -0.100 4.100 22 C -0.108 4.108 23 C -0.148 4.148 24 C -0.104 4.104 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.052 0.948 29 H 0.047 0.953 30 H 0.035 0.965 31 H 0.083 0.917 32 H 0.051 0.949 33 H 0.036 0.964 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.008 0.992 38 H 0.007 0.993 39 H -0.048 1.048 40 H 0.256 0.744 41 H 0.092 0.908 42 H 0.015 0.985 43 H 0.085 0.915 44 H 0.104 0.896 45 H 0.083 0.917 46 H 0.076 0.924 47 H 0.053 0.947 48 H 0.137 0.863 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.074 -2.487 0.974 13.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.142 4.142 3 C -0.100 4.100 4 C -0.152 4.152 5 C -0.205 4.205 6 C -0.067 4.067 7 N -0.252 5.252 8 C 0.081 3.919 9 C -0.515 4.515 10 H 0.102 0.898 11 C -0.187 4.187 12 N -0.579 5.579 13 Si 0.746 3.254 14 H -0.210 1.210 15 H -0.228 1.228 16 H -0.150 1.150 17 C -0.020 4.020 18 C -0.084 4.084 19 C -0.056 4.056 20 C -0.179 4.179 21 C -0.100 4.100 22 C -0.165 4.165 23 C -0.166 4.166 24 C -0.123 4.123 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.102 0.898 32 H 0.069 0.931 33 H 0.055 0.945 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.109 0.891 37 H 0.026 0.974 38 H 0.025 0.975 39 H -0.030 1.030 40 H 0.065 0.935 41 H 0.110 0.890 42 H 0.033 0.967 43 H 0.104 0.896 44 H 0.122 0.878 45 H 0.102 0.898 46 H 0.095 0.905 47 H 0.072 0.928 48 H 0.155 0.845 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.997 -2.926 0.906 13.353 hybrid contribution 1.861 0.754 0.206 2.019 sum -11.136 -2.172 1.112 11.400 Atomic orbital electron populations 1.21767 0.94479 1.01514 1.01942 1.21298 0.96950 0.95243 1.00701 1.21148 0.98697 0.96317 0.93827 1.21560 1.01388 0.98480 0.93752 1.21756 1.00308 1.01435 0.96994 1.22216 0.99150 0.94169 0.91141 1.62131 1.04924 1.57078 1.01034 1.19453 0.83758 0.92706 0.95993 1.21817 0.90945 1.17950 1.20832 0.89805 1.25571 0.98367 0.97050 0.97757 1.70095 1.06186 1.39060 1.42556 0.86235 0.76526 0.79548 0.83124 1.20972 1.22809 1.15037 1.20888 0.98893 0.94143 0.88094 1.19528 0.95645 0.97158 0.96064 1.20598 0.93659 0.98797 0.92539 1.20871 1.00031 0.97122 0.99878 1.20054 0.95678 0.95674 0.98572 1.20777 1.00411 0.98967 0.96309 1.21032 0.96746 1.00922 0.97939 1.20980 1.00390 0.93851 0.97042 0.92849 0.92582 0.91618 0.92963 0.93401 0.94644 0.89816 0.93056 0.94498 0.92012 0.91453 0.89119 0.97389 0.97466 1.03006 0.93510 0.88956 0.96692 0.89638 0.87765 0.89816 0.90523 0.92775 0.84481 0.85173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 9.11 71.99 0.66 -2.61 16 2 C -0.10 -3.19 5.28 30.60 0.16 -3.03 16 3 C -0.08 -2.66 2.11 -10.79 -0.02 -2.68 16 4 C -0.11 -2.91 5.07 30.60 0.16 -2.75 16 5 C -0.15 -3.46 9.52 71.98 0.69 -2.77 16 6 C 0.06 2.09 4.22 86.31 0.36 2.45 16 7 N -0.53 -21.71 3.93 -905.36 -3.56 -25.26 16 8 C 0.21 10.74 4.53 85.56 0.39 11.13 16 9 C -0.48 -25.84 5.37 25.60 0.14 -25.70 16 10 H 0.08 4.49 4.71 -2.91 -0.01 4.48 16 11 C 0.01 0.55 5.44 84.65 0.46 1.01 16 12 N -0.94 -56.85 13.29 21.45 0.28 -56.57 16 13 Si 0.92 44.37 28.32 68.60 1.94 46.31 16 14 H -0.28 -13.83 7.11 99.48 0.71 -13.12 16 15 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 16 H -0.23 -9.91 4.88 99.48 0.49 -9.42 16 17 C 0.11 4.00 5.11 85.56 0.44 4.44 16 18 C -0.08 -3.25 3.47 -19.87 -0.07 -3.32 16 19 C -0.04 -1.58 5.87 22.27 0.13 -1.45 16 20 C -0.16 -6.33 7.18 22.27 0.16 -6.17 16 21 C -0.10 -3.39 5.88 -19.87 -0.12 -3.51 16 22 C -0.11 -2.87 10.01 71.23 0.71 -2.15 16 23 C -0.15 -4.75 9.70 22.27 0.22 -4.54 16 24 C -0.10 -3.56 9.49 22.27 0.21 -3.35 16 25 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 26 H 0.06 1.30 6.23 -2.39 -0.01 1.28 16 27 H 0.06 1.29 6.58 -2.39 -0.02 1.28 16 28 H 0.05 1.53 6.96 -2.39 -0.02 1.51 16 29 H 0.05 1.78 7.62 -2.39 -0.02 1.76 16 30 H 0.04 1.46 6.12 -2.39 -0.01 1.45 16 31 H 0.08 1.78 6.19 -2.39 -0.01 1.77 16 32 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.06 1.35 6.98 -2.38 -0.02 1.34 16 35 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.09 2.59 6.03 -2.39 -0.01 2.57 16 37 H 0.01 0.29 8.12 -2.39 -0.02 0.27 16 38 H 0.01 0.42 5.91 -2.39 -0.01 0.41 16 39 H -0.05 -2.76 7.99 -2.39 -0.02 -2.78 16 40 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 41 H 0.09 2.82 7.88 -2.39 -0.02 2.80 16 42 H 0.01 0.59 7.96 -2.39 -0.02 0.57 16 43 H 0.09 4.10 7.68 -2.91 -0.02 4.08 16 44 H 0.10 4.06 7.14 -2.91 -0.02 4.04 16 45 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 46 H 0.08 1.76 8.09 -2.39 -0.02 1.74 16 47 H 0.05 1.49 8.09 -2.39 -0.02 1.47 16 48 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16 49 H 0.13 3.82 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -63.06 363.38 4.01 -59.05 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: 0.67 Total: 21.47 kcal Atomic # 6 Polarization: -49.67 SS G_CDS: 4.67 Total: -45.00 kcal Atomic # 7 Polarization: -78.56 SS G_CDS: -3.27 Total: -81.83 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.94 Total: 46.31 kcal Total: -63.06 4.01 -59.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444230555.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.645 kcal (2) G-P(sol) polarization free energy of solvation -63.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds