Wall clock time and date at job start Tue Mar 31 2020 05:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38257 * 120.00093 * 2 1 4 4 C 1.38218 * 120.00224 * 180.25166 * 3 2 1 5 5 C 1.38261 * 119.99497 * 359.53195 * 4 3 2 6 6 C 1.50694 * 119.99573 * 180.23355 * 5 4 3 7 7 C 1.38209 * 120.00044 * 0.39481 * 5 4 3 8 8 C 1.50701 * 119.99941 * 179.83397 * 7 5 4 9 9 N 1.46898 * 109.47122 * 80.02132 * 8 7 5 10 10 C 1.46906 * 110.99601 * 66.05021 * 9 8 7 11 11 C 1.50696 * 109.47252 * 63.30962 * 10 9 8 12 12 H 1.07996 * 120.00190 * 4.67626 * 11 10 9 13 13 C 1.37874 * 119.99954 * 184.66429 * 11 10 9 14 14 N 1.31513 * 120.00486 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99916 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46881 * 60.00721 * 15 13 11 17 17 H 1.48500 * 109.47383 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47323 * 300.00742 * 15 13 11 19 19 C 1.46897 * 111.00369 * 189.99901 * 9 8 7 20 20 C 1.53001 * 109.47212 * 163.70041 * 19 9 8 21 21 C 1.52994 * 109.47160 * 181.17636 * 20 19 9 22 22 C 1.53000 * 109.47155 * 175.00099 * 21 20 19 23 23 C 1.53004 * 109.47154 * 294.99910 * 21 20 19 24 24 C 1.38214 * 120.00350 * 179.97438 * 2 1 3 25 25 H 1.09003 * 109.46615 * 90.00688 * 1 2 3 26 26 H 1.08993 * 109.47365 * 210.00302 * 1 2 3 27 27 H 1.08991 * 109.47262 * 330.00944 * 1 2 3 28 28 H 1.07998 * 119.99812 * 359.97295 * 3 2 1 29 29 H 1.07994 * 120.00204 * 179.71651 * 4 3 2 30 30 H 1.08998 * 109.47033 * 270.16442 * 6 5 4 31 31 H 1.09005 * 109.47700 * 30.16683 * 6 5 4 32 32 H 1.09004 * 109.47617 * 150.16328 * 6 5 4 33 33 H 1.08995 * 109.47158 * 200.02904 * 8 7 5 34 34 H 1.09007 * 109.46995 * 320.02946 * 8 7 5 35 35 H 1.08995 * 109.47255 * 183.31424 * 10 9 8 36 36 H 1.09005 * 109.46864 * 303.31030 * 10 9 8 37 37 H 0.97000 * 120.00353 * 179.97438 * 14 13 11 38 38 H 1.08999 * 109.47217 * 283.70328 * 19 9 8 39 39 H 1.08998 * 109.46795 * 43.70289 * 19 9 8 40 40 H 1.09005 * 109.46819 * 301.17584 * 20 19 9 41 41 H 1.08997 * 109.47277 * 61.17037 * 20 19 9 42 42 H 1.09000 * 109.47508 * 54.99729 * 21 20 19 43 43 H 1.08996 * 109.47516 * 59.99847 * 22 21 20 44 44 H 1.08999 * 109.47152 * 179.97438 * 22 21 20 45 45 H 1.08996 * 109.46816 * 299.99305 * 22 21 20 46 46 H 1.08995 * 109.47246 * 59.99695 * 23 21 20 47 47 H 1.08999 * 109.47236 * 180.02562 * 23 21 20 48 48 H 1.09000 * 109.46765 * 300.00274 * 23 21 20 49 49 H 1.08005 * 119.99614 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1974 -0.0053 5 6 4.2718 0.0000 -0.0007 6 6 5.7787 0.0000 -0.0011 7 6 3.5807 -1.1969 0.0008 8 6 4.3342 -2.5021 0.0019 9 7 4.7873 -2.8047 1.3661 10 6 3.6461 -3.0592 2.2555 11 6 2.9040 -4.2826 1.7829 12 1 3.2879 -4.8611 0.9557 13 6 1.7349 -4.6636 2.4067 14 7 1.2671 -3.9591 3.4139 15 14 0.8154 -6.1806 1.8213 16 1 1.6938 -7.3713 1.9476 17 1 -0.4015 -6.3726 2.6505 18 1 0.4226 -6.0037 0.4002 19 6 5.7217 -3.9381 1.3713 20 6 6.4759 -3.9713 2.7021 21 6 7.4700 -5.1342 2.6960 22 6 8.3108 -5.0931 3.9737 23 6 6.7058 -6.4581 2.6308 24 6 2.1982 -1.1969 0.0005 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5136 28 1 1.6583 2.1326 -0.0004 29 1 4.1205 2.1326 -0.0099 30 1 6.1417 -0.0011 -1.0289 31 1 6.1423 0.8905 0.5117 32 1 6.1423 -0.8894 0.5136 33 1 3.6796 -3.2998 -0.3489 34 1 5.1977 -2.4236 -0.6587 35 1 4.0063 -3.2225 3.2712 36 1 2.9758 -2.1997 2.2416 37 1 0.4445 -4.2269 3.8525 38 1 5.1663 -4.8675 1.2451 39 1 6.4332 -3.8261 0.5532 40 1 7.0146 -3.0335 2.8378 41 1 5.7663 -4.1041 3.5187 42 1 8.1237 -5.0490 1.8280 43 1 7.6571 -5.1785 4.8417 44 1 9.0187 -5.9219 3.9696 45 1 8.8552 -4.1501 4.0201 46 1 6.1068 -6.4874 1.7207 47 1 7.4140 -7.2867 2.6270 48 1 6.0521 -6.5434 3.4988 49 1 1.6581 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000444235596.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:49 Heat of formation + Delta-G solvation = -6.066226 kcal Electronic energy + Delta-G solvation = -24096.980068 eV Core-core repulsion = 21022.538724 eV Total energy + Delta-G solvation = -3074.441344 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.25573 -37.30916 -35.34000 -33.40509 -32.34870 -31.00268 -28.83219 -28.31533 -27.00337 -26.81485 -24.64626 -24.10125 -23.09675 -21.45719 -20.36014 -19.30185 -18.95820 -16.40225 -15.43767 -15.20053 -14.90704 -14.81478 -14.66494 -14.24341 -13.86265 -13.50748 -13.21886 -12.88160 -12.81729 -12.69122 -12.32670 -12.22282 -12.13646 -12.02797 -11.84934 -11.43437 -11.30717 -11.21749 -11.06250 -10.93968 -10.91222 -10.59836 -10.47428 -10.41525 -10.33241 -10.16899 -9.93482 -9.87395 -9.74671 -9.50847 -8.39315 -8.12811 -7.80825 -7.08639 -5.98992 -4.07373 1.92778 2.01923 3.26938 3.32932 3.34892 4.26517 4.40963 5.02941 5.27089 5.30487 5.31447 5.34791 5.36064 5.45566 5.55402 5.62309 5.71805 5.87003 5.91740 5.92983 5.96861 5.99223 6.05009 6.07778 6.10365 6.17395 6.19001 6.23914 6.26431 6.34861 6.44296 6.46885 6.51259 6.53881 6.60163 6.64562 6.73255 6.85365 6.97600 7.01034 7.02811 7.19587 7.36640 7.38625 7.60012 7.66364 7.96152 8.12579 8.32432 8.38064 9.02894 9.57889 11.05328 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.010827 B = 0.006603 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.406272 B = 4239.506572 C = 6313.025964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.099 4.099 3 C -0.128 4.128 4 C -0.131 4.131 5 C -0.077 4.077 6 C -0.113 4.113 7 C -0.055 4.055 8 C 0.098 3.902 9 N -0.535 5.535 10 C 0.187 3.813 11 C -0.543 4.543 12 H 0.054 0.946 13 C 0.069 3.931 14 N -0.887 5.887 15 Si 0.880 3.120 16 H -0.278 1.278 17 H -0.287 1.287 18 H -0.278 1.278 19 C 0.058 3.942 20 C -0.104 4.104 21 C -0.093 4.093 22 C -0.144 4.144 23 C -0.146 4.146 24 C -0.087 4.087 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.085 0.915 33 H 0.048 0.952 34 H 0.058 0.942 35 H 0.026 0.974 36 H 0.038 0.962 37 H 0.261 0.739 38 H 0.051 0.949 39 H 0.044 0.956 40 H 0.057 0.943 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.047 0.953 45 H 0.050 0.950 46 H 0.059 0.941 47 H 0.042 0.958 48 H 0.056 0.944 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.376 4.709 -5.452 10.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.099 4.099 3 C -0.146 4.146 4 C -0.149 4.149 5 C -0.077 4.077 6 C -0.170 4.170 7 C -0.055 4.055 8 C -0.030 4.030 9 N -0.259 5.259 10 C 0.061 3.939 11 C -0.582 4.582 12 H 0.072 0.928 13 C -0.134 4.134 14 N -0.525 5.525 15 Si 0.708 3.292 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.204 1.204 19 C -0.070 4.070 20 C -0.141 4.141 21 C -0.112 4.112 22 C -0.202 4.202 23 C -0.204 4.204 24 C -0.105 4.105 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.128 0.872 29 H 0.129 0.871 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.044 0.956 36 H 0.056 0.944 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.073 0.927 44 H 0.066 0.934 45 H 0.069 0.931 46 H 0.078 0.922 47 H 0.061 0.939 48 H 0.075 0.925 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 7.479 5.126 -5.126 10.416 hybrid contribution -1.217 -1.587 -0.434 2.047 sum 6.262 3.539 -5.560 9.091 Atomic orbital electron populations 1.20727 0.91918 1.02634 1.01392 1.19810 0.95671 0.93243 1.01189 1.20828 0.94126 0.96938 1.02738 1.20840 0.94022 0.97040 1.02976 1.19669 0.95793 0.92446 0.99825 1.20792 0.91782 1.03349 1.01052 1.19662 0.93237 0.94457 0.98163 1.20852 0.96990 0.93254 0.91869 1.62544 1.18073 1.37792 1.07455 1.19766 0.86733 0.95775 0.91610 1.21629 1.08033 1.11756 1.16779 0.92795 1.24890 0.97214 0.96370 0.94935 1.69935 1.21693 1.38841 1.22050 0.86860 0.79501 0.84111 0.78769 1.20343 1.21294 1.20363 1.22011 0.94456 0.94477 0.96087 1.21531 0.97217 0.96567 0.98828 1.21071 0.96792 0.95875 0.97496 1.21820 0.99417 1.00816 0.98104 1.21862 0.99723 0.96044 1.02738 1.21100 0.93841 0.97698 0.97899 0.92026 0.91315 0.92240 0.87159 0.87077 0.92540 0.92659 0.89634 0.93336 0.92341 0.95580 0.94386 0.92910 0.93127 0.93700 0.92466 0.91353 0.92054 0.92747 0.93427 0.93057 0.92241 0.93864 0.92520 0.85579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.66 10.01 36.01 0.36 -1.30 16 2 C -0.10 -1.75 5.88 -104.62 -0.62 -2.36 16 3 C -0.13 -2.06 9.70 -39.58 -0.38 -2.44 16 4 C -0.13 -2.08 9.70 -39.58 -0.38 -2.47 16 5 C -0.08 -1.32 5.88 -104.63 -0.62 -1.94 16 6 C -0.11 -1.65 9.26 36.00 0.33 -1.32 16 7 C -0.05 -1.05 4.58 -104.63 -0.48 -1.53 16 8 C 0.10 1.89 4.04 -4.98 -0.02 1.87 16 9 N -0.54 -11.00 4.00 -237.52 -0.95 -11.95 16 10 C 0.19 4.64 4.73 -4.97 -0.02 4.62 16 11 C -0.54 -14.20 7.34 -34.44 -0.25 -14.46 16 12 H 0.05 1.41 5.95 -52.49 -0.31 1.09 16 13 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 14 N -0.89 -25.46 13.29 55.43 0.74 -24.72 16 15 Si 0.88 21.01 29.54 -169.99 -5.02 15.98 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 C 0.06 1.07 4.53 -3.82 -0.02 1.05 16 20 C -0.10 -1.77 4.71 -26.73 -0.13 -1.89 16 21 C -0.09 -1.33 2.92 -90.62 -0.26 -1.60 16 22 C -0.14 -1.82 9.19 37.16 0.34 -1.48 16 23 C -0.15 -2.18 8.95 37.16 0.33 -1.85 16 24 C -0.09 -1.72 8.30 -39.59 -0.33 -2.05 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.07 1.12 8.08 -51.93 -0.42 0.70 16 27 H 0.06 0.80 8.08 -51.93 -0.42 0.38 16 28 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 29 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.73 8.09 -51.93 -0.42 0.31 16 32 H 0.08 1.36 6.35 -51.93 -0.33 1.03 16 33 H 0.05 1.03 6.48 -51.93 -0.34 0.69 16 34 H 0.06 1.00 7.00 -51.93 -0.36 0.64 16 35 H 0.03 0.71 6.72 -51.93 -0.35 0.36 16 36 H 0.04 1.05 6.46 -51.93 -0.34 0.71 16 37 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 38 H 0.05 1.04 4.60 -51.93 -0.24 0.80 16 39 H 0.04 0.75 7.80 -51.93 -0.41 0.34 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.07 1.35 6.82 -51.93 -0.35 1.00 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.06 0.94 6.59 -51.93 -0.34 0.60 16 47 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 49 H 0.13 2.72 8.04 -52.48 -0.42 2.30 16 LS Contribution 378.07 15.07 5.70 5.70 Total: -1.00 -27.81 378.07 -10.61 -38.42 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -8.83 Total: 3.93 kcal Atomic # 6 Polarization: -25.13 SS G_CDS: -2.24 Total: -27.37 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: -0.21 Total: -36.67 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -27.81 -10.61 -38.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444235596.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.356 kcal (2) G-P(sol) polarization free energy of solvation -27.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds