Wall clock time and date at job start Tue Mar 31 2020 05:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38257 * 120.00093 * 2 1 4 4 C 1.38218 * 120.00224 * 180.25166 * 3 2 1 5 5 C 1.38261 * 119.99497 * 359.53195 * 4 3 2 6 6 C 1.50694 * 119.99573 * 180.23355 * 5 4 3 7 7 C 1.38209 * 120.00044 * 0.39481 * 5 4 3 8 8 C 1.50701 * 119.99941 * 179.83397 * 7 5 4 9 9 N 1.46898 * 109.47122 * 80.02132 * 8 7 5 10 10 C 1.46906 * 110.99601 * 66.05021 * 9 8 7 11 11 C 1.50696 * 109.47252 * 63.30962 * 10 9 8 12 12 H 1.07996 * 120.00190 * 4.67626 * 11 10 9 13 13 C 1.37874 * 119.99954 * 184.66429 * 11 10 9 14 14 N 1.31513 * 120.00486 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99916 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46881 * 60.00721 * 15 13 11 17 17 H 1.48500 * 109.47383 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47323 * 300.00742 * 15 13 11 19 19 C 1.46897 * 111.00369 * 189.99901 * 9 8 7 20 20 C 1.53001 * 109.47212 * 163.70041 * 19 9 8 21 21 C 1.52994 * 109.47160 * 181.17636 * 20 19 9 22 22 C 1.53000 * 109.47155 * 175.00099 * 21 20 19 23 23 C 1.53004 * 109.47154 * 294.99910 * 21 20 19 24 24 C 1.38214 * 120.00350 * 179.97438 * 2 1 3 25 25 H 1.09003 * 109.46615 * 90.00688 * 1 2 3 26 26 H 1.08993 * 109.47365 * 210.00302 * 1 2 3 27 27 H 1.08991 * 109.47262 * 330.00944 * 1 2 3 28 28 H 1.07998 * 119.99812 * 359.97295 * 3 2 1 29 29 H 1.07994 * 120.00204 * 179.71651 * 4 3 2 30 30 H 1.08998 * 109.47033 * 270.16442 * 6 5 4 31 31 H 1.09005 * 109.47700 * 30.16683 * 6 5 4 32 32 H 1.09004 * 109.47617 * 150.16328 * 6 5 4 33 33 H 1.08995 * 109.47158 * 200.02904 * 8 7 5 34 34 H 1.09007 * 109.46995 * 320.02946 * 8 7 5 35 35 H 1.08995 * 109.47255 * 183.31424 * 10 9 8 36 36 H 1.09005 * 109.46864 * 303.31030 * 10 9 8 37 37 H 0.97000 * 120.00353 * 179.97438 * 14 13 11 38 38 H 1.08999 * 109.47217 * 283.70328 * 19 9 8 39 39 H 1.08998 * 109.46795 * 43.70289 * 19 9 8 40 40 H 1.09005 * 109.46819 * 301.17584 * 20 19 9 41 41 H 1.08997 * 109.47277 * 61.17037 * 20 19 9 42 42 H 1.09000 * 109.47508 * 54.99729 * 21 20 19 43 43 H 1.08996 * 109.47516 * 59.99847 * 22 21 20 44 44 H 1.08999 * 109.47152 * 179.97438 * 22 21 20 45 45 H 1.08996 * 109.46816 * 299.99305 * 22 21 20 46 46 H 1.08995 * 109.47246 * 59.99695 * 23 21 20 47 47 H 1.08999 * 109.47236 * 180.02562 * 23 21 20 48 48 H 1.09000 * 109.46765 * 300.00274 * 23 21 20 49 49 H 1.08005 * 119.99614 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1974 -0.0053 5 6 4.2718 0.0000 -0.0007 6 6 5.7787 0.0000 -0.0011 7 6 3.5807 -1.1969 0.0008 8 6 4.3342 -2.5021 0.0019 9 7 4.7873 -2.8047 1.3661 10 6 3.6461 -3.0592 2.2555 11 6 2.9040 -4.2826 1.7829 12 1 3.2879 -4.8611 0.9557 13 6 1.7349 -4.6636 2.4067 14 7 1.2671 -3.9591 3.4139 15 14 0.8154 -6.1806 1.8213 16 1 1.6938 -7.3713 1.9476 17 1 -0.4015 -6.3726 2.6505 18 1 0.4226 -6.0037 0.4002 19 6 5.7217 -3.9381 1.3713 20 6 6.4759 -3.9713 2.7021 21 6 7.4700 -5.1342 2.6960 22 6 8.3108 -5.0931 3.9737 23 6 6.7058 -6.4581 2.6308 24 6 2.1982 -1.1969 0.0005 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5136 28 1 1.6583 2.1326 -0.0004 29 1 4.1205 2.1326 -0.0099 30 1 6.1417 -0.0011 -1.0289 31 1 6.1423 0.8905 0.5117 32 1 6.1423 -0.8894 0.5136 33 1 3.6796 -3.2998 -0.3489 34 1 5.1977 -2.4236 -0.6587 35 1 4.0063 -3.2225 3.2712 36 1 2.9758 -2.1997 2.2416 37 1 0.4445 -4.2269 3.8525 38 1 5.1663 -4.8675 1.2451 39 1 6.4332 -3.8261 0.5532 40 1 7.0146 -3.0335 2.8378 41 1 5.7663 -4.1041 3.5187 42 1 8.1237 -5.0490 1.8280 43 1 7.6571 -5.1785 4.8417 44 1 9.0187 -5.9219 3.9696 45 1 8.8552 -4.1501 4.0201 46 1 6.1068 -6.4874 1.7207 47 1 7.4140 -7.2867 2.6270 48 1 6.0521 -6.5434 3.4988 49 1 1.6581 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000444235596.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:49 Heat of formation + Delta-G solvation = -18.636060 kcal Electronic energy + Delta-G solvation = -24097.525137 eV Core-core repulsion = 21022.538724 eV Total energy + Delta-G solvation = -3074.986413 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.65880 -38.82044 -36.72619 -34.89771 -34.24718 -32.39554 -30.12502 -29.79882 -28.81989 -27.97128 -26.25840 -25.49442 -24.76303 -22.82909 -21.86602 -20.68819 -20.44008 -18.44743 -17.01747 -16.56093 -16.51576 -16.40986 -16.12056 -15.72019 -15.35349 -14.76008 -14.61981 -14.38778 -14.22879 -13.95991 -13.85903 -13.59953 -13.49384 -13.36955 -13.08566 -13.03650 -12.85338 -12.71659 -12.61438 -12.49753 -12.27382 -12.21957 -12.05610 -11.96488 -11.67978 -11.64563 -11.63381 -11.40613 -11.25157 -11.16890 -10.54428 -9.53938 -9.13986 -8.88875 -8.09503 -6.26999 0.58265 0.64225 1.33226 1.33356 1.40830 2.36522 2.88929 3.14599 3.53431 4.01112 4.04169 4.06481 4.16231 4.17217 4.21637 4.30813 4.46625 4.48691 4.54933 4.72276 4.75542 4.78469 4.81826 4.84550 4.85792 4.91428 4.92472 4.97821 5.03624 5.04131 5.06439 5.12895 5.23538 5.25212 5.26445 5.36570 5.38352 5.41023 5.45821 5.55978 5.58579 5.63163 5.69277 5.82709 5.84986 5.97011 6.14707 6.31640 6.33669 6.63783 6.93690 7.42064 8.91503 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.010827 B = 0.006603 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.406272 B = 4239.506572 C = 6313.025964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.113 4.113 3 C -0.126 4.126 4 C -0.128 4.128 5 C -0.085 4.085 6 C -0.108 4.108 7 C -0.077 4.077 8 C 0.104 3.896 9 N -0.529 5.529 10 C 0.211 3.789 11 C -0.539 4.539 12 H 0.052 0.948 13 C 0.019 3.981 14 N -0.922 5.922 15 Si 0.940 3.060 16 H -0.271 1.271 17 H -0.284 1.284 18 H -0.273 1.273 19 C 0.059 3.941 20 C -0.096 4.096 21 C -0.088 4.088 22 C -0.141 4.141 23 C -0.145 4.145 24 C -0.116 4.116 25 H 0.081 0.919 26 H 0.043 0.957 27 H 0.080 0.920 28 H 0.143 0.857 29 H 0.146 0.854 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.020 0.980 34 H 0.086 0.914 35 H -0.004 1.004 36 H 0.006 0.994 37 H 0.261 0.739 38 H 0.027 0.973 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.030 0.970 42 H 0.082 0.918 43 H 0.041 0.959 44 H 0.067 0.933 45 H 0.061 0.939 46 H 0.043 0.957 47 H 0.068 0.932 48 H 0.034 0.966 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.218 5.834 -6.723 12.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.113 4.113 3 C -0.144 4.144 4 C -0.146 4.146 5 C -0.086 4.086 6 C -0.165 4.165 7 C -0.078 4.078 8 C -0.023 4.023 9 N -0.252 5.252 10 C 0.084 3.916 11 C -0.578 4.578 12 H 0.070 0.930 13 C -0.181 4.181 14 N -0.562 5.562 15 Si 0.766 3.234 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.198 1.198 19 C -0.069 4.069 20 C -0.134 4.134 21 C -0.107 4.107 22 C -0.198 4.198 23 C -0.202 4.202 24 C -0.135 4.135 25 H 0.099 0.901 26 H 0.062 0.938 27 H 0.099 0.901 28 H 0.161 0.839 29 H 0.164 0.836 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.039 0.961 34 H 0.104 0.896 35 H 0.014 0.986 36 H 0.024 0.976 37 H 0.070 0.930 38 H 0.045 0.955 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.049 0.951 42 H 0.100 0.900 43 H 0.060 0.940 44 H 0.086 0.914 45 H 0.080 0.920 46 H 0.063 0.937 47 H 0.087 0.913 48 H 0.053 0.947 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 9.336 6.242 -6.411 12.931 hybrid contribution -1.763 -1.871 -0.069 2.571 sum 7.574 4.370 -6.480 10.884 Atomic orbital electron populations 1.20734 0.90555 1.02427 1.02615 1.20115 0.96968 0.93175 1.01047 1.21215 0.94619 0.97365 1.01238 1.21274 0.94206 0.97898 1.01195 1.20014 0.97390 0.92033 0.99142 1.20791 0.89729 1.03511 1.02458 1.19734 0.93070 0.95246 0.99733 1.20835 0.97481 0.92868 0.91124 1.62487 1.16465 1.38485 1.07759 1.19265 0.87346 0.93938 0.91035 1.21811 1.08014 1.11855 1.16167 0.92976 1.25626 0.98207 0.99150 0.95099 1.70062 1.22176 1.40552 1.23380 0.85890 0.78316 0.80811 0.78410 1.19633 1.20974 1.19787 1.22089 0.94286 0.92511 0.98012 1.21460 0.96985 0.98411 0.96509 1.21052 0.96291 0.93912 0.99409 1.21789 0.99288 1.02303 0.96443 1.21847 0.99883 0.97589 1.00926 1.20990 0.94549 0.97345 1.00616 0.90057 0.93752 0.90107 0.83897 0.83613 0.90385 0.90791 0.91148 0.96125 0.89632 0.98613 0.97557 0.93010 0.95470 0.90811 0.91710 0.95066 0.89973 0.94017 0.91370 0.91998 0.93749 0.91299 0.94685 0.89182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.22 10.01 71.24 0.71 -2.51 16 2 C -0.11 -4.01 5.88 -19.86 -0.12 -4.12 16 3 C -0.13 -3.79 9.70 22.27 0.22 -3.58 16 4 C -0.13 -3.73 9.70 22.27 0.22 -3.51 16 5 C -0.09 -2.81 5.88 -19.87 -0.12 -2.92 16 6 C -0.11 -2.87 9.26 71.23 0.66 -2.21 16 7 C -0.08 -3.03 4.58 -19.87 -0.09 -3.12 16 8 C 0.10 4.13 4.04 85.56 0.35 4.47 16 9 N -0.53 -22.40 4.00 -905.37 -3.62 -26.02 16 10 C 0.21 11.13 4.73 85.55 0.40 11.53 16 11 C -0.54 -29.72 7.34 25.60 0.19 -29.53 16 12 H 0.05 2.85 5.95 -2.91 -0.02 2.83 16 13 C 0.02 1.05 5.46 84.65 0.46 1.51 16 14 N -0.92 -55.44 13.29 21.45 0.28 -55.15 16 15 Si 0.94 44.55 29.54 68.60 2.03 46.58 16 16 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 17 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 18 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 19 C 0.06 2.20 4.53 86.30 0.39 2.59 16 20 C -0.10 -3.29 4.71 30.59 0.14 -3.14 16 21 C -0.09 -2.39 2.92 -10.79 -0.03 -2.42 16 22 C -0.14 -3.30 9.19 71.98 0.66 -2.64 16 23 C -0.15 -4.26 8.95 71.98 0.64 -3.61 16 24 C -0.12 -4.86 8.30 22.27 0.18 -4.67 16 25 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.04 1.52 8.08 -2.39 -0.02 1.50 16 27 H 0.08 2.05 8.08 -2.39 -0.02 2.04 16 28 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 29 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 30 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.07 1.68 8.09 -2.38 -0.02 1.66 16 32 H 0.07 2.08 6.35 -2.38 -0.02 2.07 16 33 H 0.02 0.92 6.48 -2.39 -0.02 0.90 16 34 H 0.09 2.86 7.00 -2.38 -0.02 2.85 16 35 H 0.00 -0.24 6.72 -2.39 -0.02 -0.26 16 36 H 0.01 0.37 6.46 -2.38 -0.02 0.36 16 37 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 38 H 0.03 1.15 4.60 -2.39 -0.01 1.14 16 39 H 0.07 2.34 7.80 -2.39 -0.02 2.32 16 40 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 41 H 0.03 1.29 6.82 -2.39 -0.02 1.27 16 42 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.04 1.41 6.59 -2.39 -0.02 1.40 16 47 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 48 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 49 H 0.09 4.29 8.04 -2.91 -0.02 4.26 16 Total: -1.00 -63.95 378.07 4.46 -59.49 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: 0.89 Total: 22.98 kcal Atomic # 6 Polarization: -52.76 SS G_CDS: 4.87 Total: -47.89 kcal Atomic # 7 Polarization: -77.83 SS G_CDS: -3.33 Total: -81.17 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -63.95 4.46 -59.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444235596.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.853 kcal (2) G-P(sol) polarization free energy of solvation -63.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds