Wall clock time and date at job start Tue Mar 31 2020 06:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00225 * 2 1 4 4 H 1.48504 * 109.46835 * 269.99931 * 3 2 1 5 5 H 1.48505 * 109.47112 * 29.99719 * 3 2 1 6 6 H 1.48493 * 109.47095 * 149.99874 * 3 2 1 7 7 C 1.37877 * 119.99667 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00135 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00088 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47031 * 180.02562 * 9 7 2 11 11 S 1.81402 * 109.46650 * 180.02562 * 10 9 7 12 12 C 1.81409 * 102.99885 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.47158 * 180.02562 * 12 11 10 14 14 C 1.38248 * 119.99737 * 270.27877 * 13 12 11 15 15 C 1.38229 * 120.03691 * 180.27381 * 14 13 12 16 16 C 1.38245 * 120.03416 * 359.69791 * 15 14 13 17 17 C 1.38307 * 120.00472 * 0.02821 * 16 15 14 18 18 Cl 1.73594 * 120.02136 * 179.97438 * 17 16 15 19 19 C 1.38298 * 119.99825 * 89.99658 * 13 12 11 20 20 Cl 1.73599 * 120.02348 * 0.03061 * 19 13 12 21 21 H 0.97001 * 119.99543 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.46536 * 60.00202 * 9 7 2 23 23 H 1.09001 * 109.46873 * 300.00336 * 9 7 2 24 24 H 1.09002 * 109.47443 * 60.00577 * 10 9 7 25 25 H 1.09001 * 109.47420 * 299.99822 * 10 9 7 26 26 H 1.08997 * 109.47069 * 59.99805 * 12 11 10 27 27 H 1.09000 * 109.47012 * 299.99920 * 12 11 10 28 28 H 1.07999 * 119.98279 * 359.97438 * 14 13 12 29 29 H 1.07992 * 119.98089 * 179.72498 * 15 14 13 30 30 H 1.08000 * 119.99753 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 0.0001 11 16 5.8354 -2.6367 0.0001 12 6 6.2434 -4.4043 -0.0005 13 6 7.7408 -4.5742 0.0001 14 6 8.4288 -4.6458 -1.1969 15 6 9.8016 -4.8073 -1.1973 16 6 10.4889 -4.8912 -0.0007 17 6 9.8028 -4.8141 1.1978 18 17 10.6652 -4.9200 2.7006 19 6 8.4273 -4.6527 1.1981 20 17 7.5646 -4.5563 2.7015 21 1 -0.4849 0.8401 -0.0004 22 1 3.8752 -0.6798 0.8895 23 1 3.8745 -0.6809 -0.8905 24 1 3.6578 -3.1507 -0.8897 25 1 3.6584 -3.1503 0.8903 26 1 5.8245 -4.8736 -0.8906 27 1 5.8245 -4.8742 0.8893 28 1 7.8929 -4.5803 -2.1322 29 1 10.3376 -4.8676 -2.1329 30 1 11.5615 -5.0169 -0.0017 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000446693057.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:34 Heat of formation + Delta-G solvation = -21.411815 kcal Electronic energy + Delta-G solvation = -15351.717970 eV Core-core repulsion = 12516.589337 eV Total energy + Delta-G solvation = -2835.128633 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 289.999 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.56806 -37.61506 -37.53693 -35.76153 -33.93349 -33.28665 -31.63764 -28.48726 -27.41314 -23.83866 -23.22879 -22.37887 -19.14628 -18.31556 -17.24741 -17.07734 -16.67218 -16.42642 -15.72718 -15.51308 -15.14503 -14.83791 -14.63790 -14.30147 -14.07749 -13.65924 -13.07646 -12.98200 -12.88733 -12.71120 -12.46004 -12.17745 -12.06090 -11.86861 -11.83928 -11.75996 -11.56269 -10.89633 -10.81076 -9.80708 -9.75382 -8.64412 -8.34043 -6.39408 -0.22906 -0.05845 0.78834 0.93661 1.20224 1.34449 1.36532 1.48715 1.66691 2.33005 2.50371 3.01229 3.34001 3.69238 3.98419 4.09392 4.21431 4.24783 4.26128 4.27881 4.49022 4.67773 4.78949 4.94352 5.15883 5.18348 5.27613 5.30344 5.53089 5.60697 6.18645 6.66390 7.25269 8.82047 Molecular weight = 290.00amu Principal moments of inertia in cm(-1) A = 0.028531 B = 0.003491 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.166466 B = 8018.361707 C = 8315.340017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.013 3.987 3 Si 0.945 3.055 4 H -0.263 1.263 5 H -0.280 1.280 6 H -0.253 1.253 7 C -0.531 4.531 8 H 0.040 0.960 9 C 0.009 3.991 10 C -0.050 4.050 11 S -0.283 6.283 12 C -0.045 4.045 13 C -0.063 4.063 14 C -0.087 4.087 15 C -0.092 4.092 16 C -0.094 4.094 17 C -0.046 4.046 18 Cl -0.055 7.055 19 C -0.036 4.036 20 Cl -0.056 7.056 21 H 0.269 0.731 22 H 0.020 0.980 23 H 0.024 0.976 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.114 0.886 27 H 0.092 0.908 28 H 0.159 0.841 29 H 0.178 0.822 30 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.344 -12.686 -1.458 28.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.185 4.185 3 Si 0.768 3.232 4 H -0.188 1.188 5 H -0.206 1.206 6 H -0.177 1.177 7 C -0.570 4.570 8 H 0.058 0.942 9 C -0.030 4.030 10 C -0.198 4.198 11 S -0.053 6.053 12 C -0.192 4.192 13 C -0.066 4.066 14 C -0.107 4.107 15 C -0.109 4.109 16 C -0.113 4.113 17 C -0.073 4.073 18 Cl -0.026 7.026 19 C -0.066 4.066 20 Cl -0.027 7.027 21 H 0.078 0.922 22 H 0.039 0.961 23 H 0.043 0.957 24 H 0.098 0.902 25 H 0.089 0.911 26 H 0.132 0.868 27 H 0.110 0.890 28 H 0.177 0.823 29 H 0.195 0.805 30 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 25.832 -11.707 -1.169 28.385 hybrid contribution -1.331 -0.257 0.638 1.498 sum 24.500 -11.964 -0.531 27.271 Atomic orbital electron populations 1.70038 1.08095 1.28354 1.52008 1.25891 0.95571 1.03217 0.93857 0.85729 0.79368 0.78614 0.79458 1.18753 1.20567 1.17712 1.21282 0.90925 0.93589 1.51252 0.94164 1.19195 0.94306 0.92333 0.97177 1.23194 0.90649 1.01831 1.04146 1.86974 1.09336 1.10868 1.98161 1.22320 0.94709 0.94939 1.07249 1.19168 0.93892 1.01297 0.92203 1.21497 0.95278 0.96684 0.97239 1.21626 0.93441 0.96704 0.99178 1.21465 1.02053 0.98422 0.89382 1.20945 0.90184 1.06658 0.89562 1.98386 1.75956 1.96492 1.31749 1.20847 0.91405 1.06174 0.88167 1.98395 1.76658 1.96394 1.31236 0.92225 0.96121 0.95725 0.90234 0.91119 0.86761 0.88987 0.82315 0.80514 0.81432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.95 13.96 21.45 0.30 -58.65 16 2 C 0.01 0.74 5.47 84.65 0.46 1.20 16 3 Si 0.95 44.73 27.47 68.60 1.88 46.61 16 4 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.25 -11.50 6.54 99.48 0.65 -10.85 16 7 C -0.53 -30.59 9.66 25.60 0.25 -30.35 16 8 H 0.04 2.51 7.99 -2.91 -0.02 2.49 16 9 C 0.01 0.41 4.05 29.85 0.12 0.53 16 10 C -0.05 -1.98 5.88 71.98 0.42 -1.55 16 11 S -0.28 -9.40 21.72 -56.49 -1.23 -10.63 16 12 C -0.05 -1.11 5.67 71.24 0.40 -0.70 16 13 C -0.06 -1.37 5.14 -19.85 -0.10 -1.47 16 14 C -0.09 -1.36 9.70 22.27 0.22 -1.15 16 15 C -0.09 -1.04 10.04 22.27 0.22 -0.81 16 16 C -0.09 -1.26 9.83 22.29 0.22 -1.04 16 17 C -0.05 -0.90 6.32 22.35 0.14 -0.76 16 18 Cl -0.05 -1.06 27.96 -2.72 -0.08 -1.14 16 19 C -0.04 -0.84 6.32 22.34 0.14 -0.70 16 20 Cl -0.06 -1.45 26.30 -2.72 -0.07 -1.52 16 21 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 22 H 0.02 1.00 7.20 -2.39 -0.02 0.99 16 23 H 0.02 1.16 7.57 -2.39 -0.02 1.14 16 24 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 25 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 26 H 0.11 2.34 8.09 -2.39 -0.02 2.32 16 27 H 0.09 2.34 6.90 -2.39 -0.02 2.32 16 28 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 29 H 0.18 0.71 8.06 -2.91 -0.02 0.69 16 30 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 Total: -1.00 -67.02 302.77 4.40 -62.63 By element: Atomic # 1 Polarization: -1.58 SS G_CDS: 1.09 Total: -0.49 kcal Atomic # 6 Polarization: -39.31 SS G_CDS: 2.50 Total: -36.81 kcal Atomic # 7 Polarization: -58.95 SS G_CDS: 0.30 Total: -58.65 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.88 Total: 46.61 kcal Atomic # 16 Polarization: -9.40 SS G_CDS: -1.23 Total: -10.63 kcal Atomic # 17 Polarization: -2.51 SS G_CDS: -0.15 Total: -2.66 kcal Total: -67.02 4.40 -62.63 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000446693057.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.215 kcal (2) G-P(sol) polarization free energy of solvation -67.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds