Wall clock time and date at job start Tue Mar 31 2020 05:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47502 * 2 1 4 4 C 1.50704 * 109.46902 * 120.00275 * 2 1 3 5 5 C 1.38234 * 120.00277 * 120.00076 * 4 2 1 6 6 C 1.38230 * 119.99885 * 180.02562 * 5 4 2 7 7 C 1.38235 * 120.00326 * 359.97438 * 6 5 4 8 8 C 1.50702 * 120.00236 * 179.70551 * 7 6 5 9 9 C 1.52996 * 109.47203 * 89.99823 * 8 7 6 10 10 N 1.46901 * 109.47045 * 179.97438 * 9 8 7 11 11 C 1.46895 * 111.00320 * 179.97438 * 10 9 8 12 12 C 1.52995 * 109.47463 * 180.02562 * 11 10 9 13 13 C 1.52996 * 109.47496 * 300.00514 * 12 11 10 14 14 C 1.53003 * 109.46753 * 60.00388 * 12 11 10 15 15 C 1.50698 * 109.47440 * 180.02562 * 12 11 10 16 16 H 1.08006 * 119.99551 * 0.02562 * 15 12 11 17 17 C 1.37873 * 120.00527 * 180.02562 * 15 12 11 18 18 N 1.31517 * 119.99875 * 0.02562 * 17 15 12 19 19 Si 1.86798 * 120.00429 * 179.97438 * 17 15 12 20 20 H 1.48503 * 109.47077 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46897 * 119.99951 * 19 17 15 22 22 H 1.48499 * 109.47105 * 240.00086 * 19 17 15 23 23 C 1.38234 * 119.99814 * 359.97438 * 7 6 5 24 24 C 1.38235 * 119.99518 * 300.01759 * 4 2 1 25 25 H 1.08997 * 109.47466 * 300.00578 * 1 2 3 26 26 H 1.09007 * 109.47020 * 59.99975 * 1 2 3 27 27 H 1.08997 * 109.47662 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46966 * 239.99231 * 2 1 3 29 29 H 1.08995 * 109.46969 * 59.99751 * 3 2 1 30 30 H 1.08994 * 109.47292 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.47004 * 300.00035 * 3 2 1 32 32 H 1.07992 * 119.99701 * 359.97438 * 5 4 2 33 33 H 1.08000 * 120.00356 * 179.97438 * 6 5 4 34 34 H 1.09003 * 109.46871 * 209.99878 * 8 7 6 35 35 H 1.09001 * 109.47017 * 329.99216 * 8 7 6 36 36 H 1.08994 * 109.47503 * 299.99842 * 9 8 7 37 37 H 1.09001 * 109.47176 * 60.00391 * 9 8 7 38 38 H 1.00903 * 111.00119 * 303.95811 * 10 9 8 39 39 H 1.09003 * 109.47207 * 300.00512 * 11 10 9 40 40 H 1.09003 * 109.46645 * 60.00586 * 11 10 9 41 41 H 1.08997 * 109.47355 * 59.99488 * 13 12 11 42 42 H 1.08996 * 109.47603 * 179.97438 * 13 12 11 43 43 H 1.09003 * 109.47201 * 299.99813 * 13 12 11 44 44 H 1.09003 * 109.47194 * 59.99969 * 14 12 11 45 45 H 1.09004 * 109.47087 * 180.02562 * 14 12 11 46 46 H 1.08994 * 109.47313 * 299.99505 * 14 12 11 47 47 H 0.97001 * 120.00466 * 180.02562 * 18 17 15 48 48 H 1.08001 * 120.00299 * 179.97438 * 23 7 6 49 49 H 1.07997 * 120.00423 * 359.97438 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 2.8270 -1.8344 1.1037 6 6 3.2872 -2.4863 2.2324 7 6 2.9532 -2.0141 3.4879 8 6 3.4495 -2.7288 4.7184 9 6 4.7994 -2.1438 5.1382 10 7 5.2829 -2.8400 6.3381 11 6 6.5803 -2.3041 6.7709 12 6 7.0505 -3.0527 8.0196 13 6 6.0243 -2.8712 9.1398 14 6 7.1956 -4.5414 7.6972 15 6 8.3811 -2.5025 8.4640 16 1 8.8449 -1.6988 7.9113 17 6 9.0066 -3.0250 9.5761 18 7 8.4421 -4.0039 10.2489 19 14 10.6564 -2.3434 10.1266 20 1 11.0739 -1.2547 9.2069 21 1 10.5348 -1.8063 11.5057 22 1 11.6716 -3.4269 10.1050 23 6 2.1594 -0.8896 3.6147 24 6 1.6979 -0.2384 2.4860 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5140 -0.8900 29 1 1.6767 1.9562 0.8899 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 3.0876 -2.2036 0.1228 33 1 3.9078 -3.3647 2.1334 34 1 2.7305 -2.6008 5.5276 35 1 3.5655 -3.7903 4.5000 36 1 5.5184 -2.2718 4.3291 37 1 4.6833 -1.0823 5.3567 38 1 4.6041 -2.7906 7.0830 39 1 7.3115 -2.4339 5.9730 40 1 6.4770 -1.2435 7.0002 41 1 5.0616 -3.2689 8.8187 42 1 6.3590 -3.4049 10.0292 43 1 5.9209 -1.8107 9.3695 44 1 7.9267 -4.6708 6.8992 45 1 7.5301 -5.0749 8.5870 46 1 6.2329 -4.9391 7.3761 47 1 8.8819 -4.3713 11.0315 48 1 1.8980 -0.5208 4.5956 49 1 1.0771 0.6398 2.5851 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459659918.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:52 Heat of formation + Delta-G solvation = -8.164524 kcal Electronic energy + Delta-G solvation = -22436.667774 eV Core-core repulsion = 19362.135441 eV Total energy + Delta-G solvation = -3074.532333 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.81210 -37.15968 -36.03382 -34.20268 -31.93673 -31.00039 -30.39177 -27.49244 -27.44191 -25.53846 -25.18712 -24.16924 -23.01820 -22.41628 -21.31431 -20.01282 -18.40183 -16.53681 -15.92975 -15.81068 -15.29835 -15.12131 -14.64021 -14.17339 -14.12873 -13.87916 -13.68433 -13.48403 -13.23484 -12.80201 -12.76092 -12.54814 -12.31724 -11.98974 -11.76476 -11.69372 -11.47278 -11.32068 -11.11863 -11.03076 -10.90624 -10.76606 -10.72108 -10.56446 -10.52384 -10.14136 -10.03293 -9.35856 -9.07825 -8.97406 -8.59799 -8.51382 -8.27411 -7.67571 -5.89348 -3.99496 1.27228 1.34998 3.31470 3.39737 3.43490 3.66903 4.41063 4.45476 4.53146 4.69934 4.87198 4.90536 4.94728 5.15710 5.20021 5.28006 5.31249 5.36067 5.41236 5.44663 5.51932 5.54562 5.62579 5.67586 5.79010 5.91164 5.93314 5.93399 6.04796 6.15180 6.26992 6.37399 6.39489 6.45188 6.53352 6.66938 6.74604 6.91872 6.96091 7.10377 7.19418 7.41028 7.49805 7.76133 7.78393 7.85741 8.01281 8.23764 8.37168 8.58416 9.02155 9.65357 11.11215 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.034512 B = 0.002380 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.126082 B =11760.997884 C =12036.722384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.056 4.056 3 C -0.144 4.144 4 C -0.087 4.087 5 C -0.117 4.117 6 C -0.113 4.113 7 C -0.076 4.076 8 C -0.080 4.080 9 C 0.066 3.934 10 N -0.688 5.688 11 C 0.076 3.924 12 C 0.067 3.933 13 C -0.132 4.132 14 C -0.119 4.119 15 C -0.505 4.505 16 H 0.052 0.948 17 C 0.064 3.936 18 N -0.885 5.885 19 Si 0.888 3.112 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.285 1.285 23 C -0.116 4.116 24 C -0.114 4.114 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.118 0.882 33 H 0.123 0.877 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.021 0.979 38 H 0.336 0.664 39 H 0.055 0.945 40 H 0.012 0.988 41 H 0.011 0.989 42 H 0.083 0.917 43 H 0.018 0.982 44 H 0.017 0.983 45 H 0.074 0.926 46 H 0.020 0.980 47 H 0.257 0.743 48 H 0.120 0.880 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.565 6.393 -18.018 24.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.075 4.075 3 C -0.202 4.202 4 C -0.087 4.087 5 C -0.135 4.135 6 C -0.131 4.131 7 C -0.076 4.076 8 C -0.118 4.118 9 C -0.064 4.064 10 N -0.320 5.320 11 C -0.052 4.052 12 C 0.067 3.933 13 C -0.190 4.190 14 C -0.177 4.177 15 C -0.543 4.543 16 H 0.070 0.930 17 C -0.137 4.137 18 N -0.524 5.524 19 Si 0.717 3.283 20 H -0.200 1.200 21 H -0.212 1.212 22 H -0.211 1.211 23 C -0.134 4.134 24 C -0.132 4.132 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.136 0.864 33 H 0.141 0.859 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.039 0.961 38 H 0.155 0.845 39 H 0.074 0.926 40 H 0.030 0.970 41 H 0.030 0.970 42 H 0.102 0.898 43 H 0.037 0.963 44 H 0.037 0.963 45 H 0.093 0.907 46 H 0.039 0.961 47 H 0.067 0.933 48 H 0.138 0.862 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -15.238 5.767 -18.209 24.434 hybrid contribution 0.733 1.287 0.719 1.646 sum -14.505 7.053 -17.490 23.792 Atomic orbital electron populations 1.21855 0.94463 1.01966 1.01804 1.20110 0.95848 0.96023 0.95479 1.21858 1.01348 0.95150 1.01800 1.19802 0.98339 0.96011 0.94531 1.21020 0.98344 0.95694 0.98463 1.21081 0.99891 1.00203 0.91906 1.19945 0.97002 0.95667 0.95032 1.20618 0.96857 1.00057 0.94245 1.21864 0.94843 0.94980 0.94706 1.60596 1.06097 1.57945 1.07358 1.22137 0.88533 0.95507 0.99049 1.18110 0.93639 0.92787 0.88811 1.21831 0.95772 0.98571 1.02816 1.21637 0.97199 0.98360 1.00466 1.21151 1.03900 1.18266 1.11021 0.92985 1.24895 0.97350 0.94971 0.96475 1.69846 1.38154 1.25690 1.18693 0.86602 0.84419 0.78910 0.78415 1.19971 1.21186 1.21110 1.21062 0.98186 0.95585 0.98527 1.20907 1.00447 0.99889 0.91961 0.92477 0.92524 0.92561 0.90648 0.92457 0.92480 0.92523 0.86386 0.85942 0.91308 0.90129 0.91531 0.96099 0.84487 0.92636 0.96971 0.97023 0.89828 0.96255 0.96335 0.90748 0.96086 0.93269 0.86238 0.86460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.01 37.16 0.33 -0.64 16 2 C -0.06 -0.43 3.09 -91.77 -0.28 -0.72 16 3 C -0.14 -1.03 9.01 37.16 0.33 -0.70 16 4 C -0.09 -0.85 4.78 -104.62 -0.50 -1.35 16 5 C -0.12 -1.20 9.67 -39.59 -0.38 -1.59 16 6 C -0.11 -1.28 9.70 -39.59 -0.38 -1.66 16 7 C -0.08 -0.91 5.13 -104.62 -0.54 -1.44 16 8 C -0.08 -1.01 5.61 -27.88 -0.16 -1.17 16 9 C 0.07 1.00 5.67 -3.83 -0.02 0.98 16 10 N -0.69 -12.48 5.71 -113.79 -0.65 -13.13 16 11 C 0.08 1.63 4.59 -3.83 -0.02 1.61 16 12 C 0.07 1.65 0.57 -155.66 -0.09 1.56 16 13 C -0.13 -3.15 7.92 37.16 0.29 -2.85 16 14 C -0.12 -2.94 8.09 37.16 0.30 -2.64 16 15 C -0.50 -13.76 8.01 -34.44 -0.28 -14.03 16 16 H 0.05 1.42 7.74 -52.48 -0.41 1.02 16 17 C 0.06 1.75 5.15 -17.82 -0.09 1.66 16 18 N -0.88 -24.69 9.35 55.43 0.52 -24.18 16 19 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 C -0.12 -1.30 9.70 -39.58 -0.38 -1.68 16 24 C -0.11 -1.16 8.71 -39.58 -0.34 -1.50 16 25 H 0.06 0.38 7.39 -51.93 -0.38 0.00 16 26 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 0.54 7.88 -51.93 -0.41 0.13 16 29 H 0.06 0.41 7.39 -51.93 -0.38 0.03 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.34 8.14 -51.92 -0.42 -0.09 16 32 H 0.12 0.99 7.95 -52.49 -0.42 0.58 16 33 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 34 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 35 H 0.08 1.03 8.09 -51.93 -0.42 0.61 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.34 5.97 6.77 -39.29 -0.27 5.70 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.01 0.23 6.57 -51.93 -0.34 -0.11 16 42 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.07 2.01 6.07 -51.93 -0.32 1.69 16 46 H 0.02 0.47 7.60 -51.93 -0.39 0.08 16 47 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 48 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 49 H 0.12 1.00 7.10 -52.49 -0.37 0.63 16 LS Contribution 380.88 15.07 5.74 5.74 Total: -1.00 -27.95 380.88 -10.67 -38.62 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -9.05 Total: 2.84 kcal Atomic # 6 Polarization: -23.96 SS G_CDS: -2.20 Total: -26.17 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: -0.13 Total: -37.31 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -27.95 -10.67 -38.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459659918.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.454 kcal (2) G-P(sol) polarization free energy of solvation -27.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds