Wall clock time and date at job start Tue Mar 31 2020 05:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47502 * 2 1 4 4 C 1.50704 * 109.46902 * 120.00275 * 2 1 3 5 5 C 1.38234 * 120.00277 * 120.00076 * 4 2 1 6 6 C 1.38230 * 119.99885 * 180.02562 * 5 4 2 7 7 C 1.38235 * 120.00326 * 359.97438 * 6 5 4 8 8 C 1.50702 * 120.00236 * 179.70551 * 7 6 5 9 9 C 1.52996 * 109.47203 * 89.99823 * 8 7 6 10 10 N 1.46901 * 109.47045 * 179.97438 * 9 8 7 11 11 C 1.46895 * 111.00320 * 179.97438 * 10 9 8 12 12 C 1.52995 * 109.47463 * 180.02562 * 11 10 9 13 13 C 1.52996 * 109.47496 * 300.00514 * 12 11 10 14 14 C 1.53003 * 109.46753 * 60.00388 * 12 11 10 15 15 C 1.50698 * 109.47440 * 180.02562 * 12 11 10 16 16 H 1.08006 * 119.99551 * 0.02562 * 15 12 11 17 17 C 1.37873 * 120.00527 * 180.02562 * 15 12 11 18 18 N 1.31517 * 119.99875 * 0.02562 * 17 15 12 19 19 Si 1.86798 * 120.00429 * 179.97438 * 17 15 12 20 20 H 1.48503 * 109.47077 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46897 * 119.99951 * 19 17 15 22 22 H 1.48499 * 109.47105 * 240.00086 * 19 17 15 23 23 C 1.38234 * 119.99814 * 359.97438 * 7 6 5 24 24 C 1.38235 * 119.99518 * 300.01759 * 4 2 1 25 25 H 1.08997 * 109.47466 * 300.00578 * 1 2 3 26 26 H 1.09007 * 109.47020 * 59.99975 * 1 2 3 27 27 H 1.08997 * 109.47662 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46966 * 239.99231 * 2 1 3 29 29 H 1.08995 * 109.46969 * 59.99751 * 3 2 1 30 30 H 1.08994 * 109.47292 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.47004 * 300.00035 * 3 2 1 32 32 H 1.07992 * 119.99701 * 359.97438 * 5 4 2 33 33 H 1.08000 * 120.00356 * 179.97438 * 6 5 4 34 34 H 1.09003 * 109.46871 * 209.99878 * 8 7 6 35 35 H 1.09001 * 109.47017 * 329.99216 * 8 7 6 36 36 H 1.08994 * 109.47503 * 299.99842 * 9 8 7 37 37 H 1.09001 * 109.47176 * 60.00391 * 9 8 7 38 38 H 1.00903 * 111.00119 * 303.95811 * 10 9 8 39 39 H 1.09003 * 109.47207 * 300.00512 * 11 10 9 40 40 H 1.09003 * 109.46645 * 60.00586 * 11 10 9 41 41 H 1.08997 * 109.47355 * 59.99488 * 13 12 11 42 42 H 1.08996 * 109.47603 * 179.97438 * 13 12 11 43 43 H 1.09003 * 109.47201 * 299.99813 * 13 12 11 44 44 H 1.09003 * 109.47194 * 59.99969 * 14 12 11 45 45 H 1.09004 * 109.47087 * 180.02562 * 14 12 11 46 46 H 1.08994 * 109.47313 * 299.99505 * 14 12 11 47 47 H 0.97001 * 120.00466 * 180.02562 * 18 17 15 48 48 H 1.08001 * 120.00299 * 179.97438 * 23 7 6 49 49 H 1.07997 * 120.00423 * 359.97438 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 2.8270 -1.8344 1.1037 6 6 3.2872 -2.4863 2.2324 7 6 2.9532 -2.0141 3.4879 8 6 3.4495 -2.7288 4.7184 9 6 4.7994 -2.1438 5.1382 10 7 5.2829 -2.8400 6.3381 11 6 6.5803 -2.3041 6.7709 12 6 7.0505 -3.0527 8.0196 13 6 6.0243 -2.8712 9.1398 14 6 7.1956 -4.5414 7.6972 15 6 8.3811 -2.5025 8.4640 16 1 8.8449 -1.6988 7.9113 17 6 9.0066 -3.0250 9.5761 18 7 8.4421 -4.0039 10.2489 19 14 10.6564 -2.3434 10.1266 20 1 11.0739 -1.2547 9.2069 21 1 10.5348 -1.8063 11.5057 22 1 11.6716 -3.4269 10.1050 23 6 2.1594 -0.8896 3.6147 24 6 1.6979 -0.2384 2.4860 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5140 -0.8900 29 1 1.6767 1.9562 0.8899 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 3.0876 -2.2036 0.1228 33 1 3.9078 -3.3647 2.1334 34 1 2.7305 -2.6008 5.5276 35 1 3.5655 -3.7903 4.5000 36 1 5.5184 -2.2718 4.3291 37 1 4.6833 -1.0823 5.3567 38 1 4.6041 -2.7906 7.0830 39 1 7.3115 -2.4339 5.9730 40 1 6.4770 -1.2435 7.0002 41 1 5.0616 -3.2689 8.8187 42 1 6.3590 -3.4049 10.0292 43 1 5.9209 -1.8107 9.3695 44 1 7.9267 -4.6708 6.8992 45 1 7.5301 -5.0749 8.5870 46 1 6.2329 -4.9391 7.3761 47 1 8.8819 -4.3713 11.0315 48 1 1.8980 -0.5208 4.5956 49 1 1.0771 0.6398 2.5851 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459659918.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:51 Heat of formation + Delta-G solvation = -19.956163 kcal Electronic energy + Delta-G solvation = -22437.179098 eV Core-core repulsion = 19362.135441 eV Total energy + Delta-G solvation = -3075.043657 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.60487 -38.76412 -37.01878 -35.60492 -33.47241 -31.93606 -31.71364 -28.60434 -27.96648 -27.50255 -27.24464 -25.60036 -23.98305 -23.47808 -22.28203 -20.75328 -20.30137 -17.90564 -17.30427 -17.04524 -16.64516 -16.28424 -15.95117 -15.45737 -15.17800 -14.79414 -14.61077 -14.44452 -14.38910 -14.16377 -14.04989 -13.82028 -13.49340 -13.16663 -13.07401 -12.93397 -12.69768 -12.64726 -12.47322 -12.35459 -12.27598 -12.13667 -12.06316 -11.94641 -11.82252 -11.51655 -11.45730 -11.30040 -10.93834 -10.59434 -10.34769 -9.78532 -9.36676 -9.18693 -7.96930 -6.13726 0.44950 0.53888 1.40663 1.43822 1.53386 2.46126 2.84256 3.24877 3.41050 3.78165 3.87399 4.06764 4.17497 4.18443 4.29324 4.34361 4.36889 4.55635 4.58436 4.61269 4.62007 4.67364 4.71584 4.81905 4.87562 4.97591 5.00051 5.00616 5.03065 5.08615 5.17412 5.17835 5.23821 5.28109 5.30021 5.36550 5.39913 5.43631 5.53758 5.58367 5.70123 5.77321 5.77885 5.79674 6.15638 6.17254 6.24967 6.33973 6.49658 6.64993 6.95581 7.53649 9.01426 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.034512 B = 0.002380 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.126082 B =11760.997884 C =12036.722384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.056 4.056 3 C -0.143 4.143 4 C -0.087 4.087 5 C -0.125 4.125 6 C -0.124 4.124 7 C -0.092 4.092 8 C -0.068 4.068 9 C 0.071 3.929 10 N -0.688 5.688 11 C 0.090 3.910 12 C 0.057 3.943 13 C -0.121 4.121 14 C -0.106 4.106 15 C -0.525 4.525 16 H 0.043 0.957 17 C 0.021 3.979 18 N -0.903 5.903 19 Si 0.945 3.055 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.283 1.283 23 C -0.126 4.126 24 C -0.119 4.119 25 H 0.056 0.944 26 H 0.069 0.931 27 H 0.051 0.949 28 H 0.082 0.918 29 H 0.056 0.944 30 H 0.047 0.953 31 H 0.070 0.930 32 H 0.135 0.865 33 H 0.126 0.874 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.060 0.940 37 H 0.021 0.979 38 H 0.340 0.660 39 H 0.046 0.954 40 H 0.007 0.993 41 H 0.035 0.965 42 H 0.056 0.944 43 H 0.016 0.984 44 H 0.009 0.991 45 H 0.049 0.951 46 H 0.035 0.965 47 H 0.257 0.743 48 H 0.126 0.874 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.555 7.241 -19.282 26.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.074 4.074 3 C -0.200 4.200 4 C -0.087 4.087 5 C -0.143 4.143 6 C -0.142 4.142 7 C -0.093 4.093 8 C -0.106 4.106 9 C -0.058 4.058 10 N -0.320 5.320 11 C -0.039 4.039 12 C 0.056 3.944 13 C -0.179 4.179 14 C -0.163 4.163 15 C -0.564 4.564 16 H 0.061 0.939 17 C -0.178 4.178 18 N -0.542 5.542 19 Si 0.772 3.228 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.209 1.209 23 C -0.144 4.144 24 C -0.137 4.137 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.070 0.930 28 H 0.100 0.900 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.153 0.847 33 H 0.144 0.856 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.039 0.961 38 H 0.159 0.841 39 H 0.064 0.936 40 H 0.025 0.975 41 H 0.054 0.946 42 H 0.075 0.925 43 H 0.035 0.965 44 H 0.028 0.972 45 H 0.068 0.932 46 H 0.054 0.946 47 H 0.067 0.933 48 H 0.144 0.856 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -16.240 6.617 -19.481 26.211 hybrid contribution 1.002 1.033 1.050 1.782 sum -15.238 7.650 -18.430 25.108 Atomic orbital electron populations 1.21839 0.93652 1.01893 1.02497 1.20164 0.96469 0.96127 0.94671 1.21850 1.00785 0.94901 1.02500 1.20116 0.97564 0.95727 0.95337 1.21279 0.98260 0.95840 0.98952 1.21239 1.00190 1.00615 0.92165 1.19918 0.98148 0.96389 0.94846 1.20464 0.95404 0.99773 0.94941 1.21864 0.96046 0.94878 0.93062 1.60518 1.05015 1.58236 1.08268 1.21803 0.89990 0.94762 0.97314 1.18174 0.93019 0.92793 0.90367 1.21665 0.96688 0.98116 1.01439 1.21473 0.97556 0.98429 0.98892 1.21448 1.05340 1.18298 1.11296 0.93877 1.25549 1.00293 0.95336 0.96655 1.69970 1.39153 1.26283 1.18811 0.85707 0.80841 0.78282 0.77957 1.19761 1.20790 1.20862 1.21236 0.98231 0.95531 0.99355 1.21133 1.00459 1.00297 0.91843 0.92499 0.91162 0.93014 0.89970 0.92529 0.93344 0.91102 0.84740 0.85590 0.90619 0.90368 0.92134 0.96082 0.84055 0.93578 0.97495 0.94567 0.92495 0.96450 0.97165 0.93218 0.94563 0.93294 0.85560 0.84928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.01 71.98 0.65 -0.96 16 2 C -0.06 -0.74 3.09 -11.54 -0.04 -0.78 16 3 C -0.14 -1.76 9.01 71.98 0.65 -1.11 16 4 C -0.09 -1.57 4.78 -19.86 -0.09 -1.66 16 5 C -0.13 -2.40 9.67 22.27 0.22 -2.18 16 6 C -0.12 -2.69 9.70 22.27 0.22 -2.48 16 7 C -0.09 -2.12 5.13 -19.87 -0.10 -2.22 16 8 C -0.07 -1.65 5.61 29.85 0.17 -1.48 16 9 C 0.07 2.08 5.67 86.30 0.49 2.57 16 10 N -0.69 -24.24 5.71 -513.91 -2.94 -27.17 16 11 C 0.09 3.83 4.59 86.30 0.40 4.23 16 12 C 0.06 2.79 0.57 -52.93 -0.03 2.76 16 13 C -0.12 -5.73 7.92 71.98 0.57 -5.16 16 14 C -0.11 -5.22 8.09 71.98 0.58 -4.64 16 15 C -0.53 -28.78 8.01 25.60 0.21 -28.57 16 16 H 0.04 2.38 7.74 -2.91 -0.02 2.35 16 17 C 0.02 1.13 5.15 84.65 0.44 1.56 16 18 N -0.90 -50.76 9.35 21.45 0.20 -50.56 16 19 Si 0.95 43.79 29.54 68.60 2.03 45.82 16 20 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 21 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 22 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 23 C -0.13 -2.66 9.70 22.27 0.22 -2.44 16 24 C -0.12 -2.24 8.71 22.27 0.19 -2.05 16 25 H 0.06 0.65 7.39 -2.39 -0.02 0.63 16 26 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 27 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.08 0.98 7.88 -2.38 -0.02 0.97 16 29 H 0.06 0.70 7.39 -2.39 -0.02 0.68 16 30 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.13 2.03 7.95 -2.91 -0.02 2.01 16 33 H 0.13 2.54 8.06 -2.91 -0.02 2.51 16 34 H 0.08 1.71 8.08 -2.39 -0.02 1.69 16 35 H 0.08 1.92 8.09 -2.39 -0.02 1.90 16 36 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.02 0.62 8.14 -2.39 -0.02 0.61 16 38 H 0.34 11.54 6.77 -89.69 -0.61 10.93 16 39 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 41 H 0.04 1.48 6.57 -2.39 -0.02 1.47 16 42 H 0.06 3.01 6.07 -2.39 -0.01 2.99 16 43 H 0.02 0.77 8.14 -2.39 -0.02 0.76 16 44 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 45 H 0.05 2.69 6.07 -2.38 -0.01 2.68 16 46 H 0.04 1.62 7.60 -2.39 -0.02 1.61 16 47 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 48 H 0.13 2.41 8.06 -2.91 -0.02 2.38 16 49 H 0.13 2.00 7.10 -2.91 -0.02 1.98 16 Total: -1.00 -58.56 380.88 4.29 -54.27 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: 0.28 Total: 22.26 kcal Atomic # 6 Polarization: -49.33 SS G_CDS: 4.72 Total: -44.61 kcal Atomic # 7 Polarization: -75.00 SS G_CDS: -2.73 Total: -77.73 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -58.56 4.29 -54.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459659918.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.310 kcal (2) G-P(sol) polarization free energy of solvation -58.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds