Wall clock time and date at job start Tue Mar 31 2020 06:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47537 * 2 1 4 4 H 1.09002 * 109.47422 * 56.84060 * 3 2 1 5 5 C 1.52997 * 109.47437 * 176.84209 * 3 2 1 6 6 C 1.50699 * 109.47261 * 184.99777 * 5 3 2 7 7 C 1.38236 * 120.00269 * 269.72622 * 6 5 3 8 8 C 1.38241 * 120.00116 * 179.78477 * 7 6 5 9 9 C 1.38234 * 119.99883 * 0.46868 * 8 7 6 10 10 C 1.50695 * 120.00092 * 179.79007 * 9 8 7 11 11 C 1.38241 * 119.99861 * 359.76278 * 9 8 7 12 12 C 1.38230 * 119.99921 * 0.02798 * 11 9 8 13 13 N 1.46902 * 109.47002 * 296.84433 * 3 2 1 14 14 C 1.46904 * 110.99827 * 300.53667 * 13 3 2 15 15 C 1.53001 * 109.46707 * 175.62508 * 14 13 3 16 16 C 1.53003 * 109.46821 * 299.99426 * 15 14 13 17 17 C 1.52993 * 109.47688 * 59.99810 * 15 14 13 18 18 C 1.50710 * 109.46748 * 180.02562 * 15 14 13 19 19 H 1.07999 * 119.99634 * 359.97438 * 18 15 14 20 20 C 1.37875 * 119.99910 * 179.97438 * 18 15 14 21 21 N 1.31518 * 119.99865 * 0.02562 * 20 18 15 22 22 Si 1.86796 * 120.00132 * 179.97438 * 20 18 15 23 23 H 1.48507 * 109.46839 * 60.00293 * 22 20 18 24 24 H 1.48500 * 109.47518 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47337 * 300.00594 * 22 20 18 26 26 H 1.09007 * 109.47146 * 295.28469 * 1 2 3 27 27 H 1.09003 * 109.47219 * 55.28294 * 1 2 3 28 28 H 1.08999 * 109.47575 * 175.28357 * 1 2 3 29 29 H 1.09001 * 109.47238 * 240.00245 * 2 1 3 30 30 H 1.09005 * 109.47396 * 120.00045 * 2 1 3 31 31 H 1.09002 * 109.47433 * 305.00333 * 5 3 2 32 32 H 1.09004 * 109.46799 * 65.00281 * 5 3 2 33 33 H 1.08006 * 119.99993 * 0.02562 * 7 6 5 34 34 H 1.08003 * 119.99875 * 180.25465 * 8 7 6 35 35 H 1.09007 * 109.47006 * 269.97748 * 10 9 8 36 36 H 1.08993 * 109.47110 * 29.97205 * 10 9 8 37 37 H 1.08998 * 109.47304 * 149.97996 * 10 9 8 38 38 H 1.08002 * 119.99860 * 179.97438 * 11 9 8 39 39 H 1.08003 * 119.99575 * 179.97438 * 12 11 9 40 40 H 1.00901 * 111.00264 * 176.58214 * 13 3 2 41 41 H 1.08987 * 109.47229 * 55.62259 * 14 13 3 42 42 H 1.09004 * 109.47135 * 295.61733 * 14 13 3 43 43 H 1.08994 * 109.47078 * 60.00633 * 16 15 14 44 44 H 1.09007 * 109.46702 * 180.02562 * 16 15 14 45 45 H 1.09000 * 109.47430 * 300.00159 * 16 15 14 46 46 H 1.09004 * 109.47310 * 60.00067 * 17 15 14 47 47 H 1.08997 * 109.47447 * 179.97438 * 17 15 14 48 48 H 1.09003 * 109.47150 * 299.99724 * 17 15 14 49 49 H 0.96997 * 119.99857 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6312 1.9725 0.8603 5 6 3.5679 1.4432 0.0795 6 6 4.0639 2.8608 0.2031 7 6 4.3588 3.5915 -0.9326 8 6 4.8095 4.8935 -0.8193 9 6 4.9745 5.4614 0.4301 10 6 5.4704 6.8791 0.5539 11 6 4.6842 4.7291 1.5661 12 6 4.2294 3.4287 1.4526 13 7 1.6136 2.1126 -1.2358 14 6 2.1366 1.4169 -2.4193 15 6 1.5841 2.0769 -3.6842 16 6 0.0564 1.9935 -3.6773 17 6 2.0146 3.5444 -3.7236 18 6 2.1201 1.3628 -4.8984 19 1 2.7882 0.5226 -4.7795 20 6 1.7574 1.7821 -6.1608 21 7 0.9442 2.8055 -6.3054 22 14 2.4223 0.8975 -7.6657 23 1 2.0048 -0.5272 -7.6271 24 1 1.8850 1.5371 -8.8935 25 1 3.9050 0.9787 -7.6728 26 1 -0.3634 0.4390 0.9293 27 1 -0.3634 0.5853 -0.8447 28 1 -0.3634 -1.0241 -0.0845 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8868 0.8694 0.9497 32 1 3.9789 0.9920 -0.8237 33 1 4.2333 3.1466 -1.9088 34 1 5.0359 5.4657 -1.7068 35 1 6.5589 6.8796 0.6112 36 1 5.1522 7.4525 -0.3167 37 1 5.0588 7.3305 1.4566 38 1 4.8136 5.1726 2.5423 39 1 4.0030 2.8564 2.3401 40 1 1.8904 3.0829 -1.2350 41 1 1.8299 0.3715 -2.3912 42 1 3.2250 1.4763 -2.4242 43 1 -0.3316 2.5096 -2.7992 44 1 -0.3372 2.4633 -4.5787 45 1 -0.2504 0.9479 -3.6493 46 1 3.1030 3.6038 -3.7286 47 1 1.6214 4.0144 -4.6250 48 1 1.6266 4.0606 -2.8455 49 1 0.6893 3.1007 -7.1935 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459729569.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:30 Heat of formation + Delta-G solvation = -1.052576 kcal Electronic energy + Delta-G solvation = -24294.792703 eV Core-core repulsion = 21220.568766 eV Total energy + Delta-G solvation = -3074.223936 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.66224 -37.74371 -35.27458 -33.15970 -31.87544 -30.75407 -30.30366 -28.92060 -25.98453 -25.52199 -25.21392 -24.15126 -23.00484 -22.54652 -20.57689 -19.73225 -18.07799 -16.35666 -15.96683 -15.44518 -15.33444 -14.94342 -14.53643 -14.23875 -13.77204 -13.51521 -13.45777 -13.24532 -12.88297 -12.77153 -12.47655 -12.29197 -12.10669 -12.00097 -11.76738 -11.40357 -11.20765 -11.16815 -10.98364 -10.85423 -10.72481 -10.63862 -10.48705 -10.42586 -10.17248 -9.99850 -9.93535 -9.28619 -9.00508 -8.76839 -8.56641 -8.38412 -8.24198 -7.52480 -5.87424 -3.97741 1.46000 1.55372 3.34006 3.39026 3.41622 3.87071 4.46556 4.83009 4.86672 4.95909 5.01678 5.15032 5.23833 5.35713 5.37894 5.48102 5.54189 5.55619 5.63044 5.66582 5.78696 5.84785 5.92645 5.95623 6.10735 6.17459 6.24057 6.25318 6.31111 6.46037 6.51860 6.57506 6.61027 6.73362 6.79960 6.83050 6.85227 6.96960 7.15450 7.17601 7.24520 7.45139 7.54934 7.80499 7.82221 7.91189 8.08414 8.27711 8.40683 8.60835 9.04024 9.67119 11.12717 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.013839 B = 0.005156 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.777010 B = 5429.352913 C = 6745.525776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 C 0.094 3.906 4 H 0.071 0.929 5 C -0.121 4.121 6 C -0.080 4.080 7 C -0.111 4.111 8 C -0.113 4.113 9 C -0.097 4.097 10 C -0.112 4.112 11 C -0.123 4.123 12 C -0.117 4.117 13 N -0.674 5.674 14 C 0.069 3.931 15 C 0.071 3.929 16 C -0.118 4.118 17 C -0.129 4.129 18 C -0.505 4.505 19 H 0.049 0.951 20 C 0.066 3.934 21 N -0.884 5.884 22 Si 0.886 3.114 23 H -0.279 1.279 24 H -0.288 1.288 25 H -0.280 1.280 26 H 0.042 0.958 27 H 0.076 0.924 28 H 0.041 0.959 29 H 0.066 0.934 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.130 0.870 34 H 0.120 0.880 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.338 0.662 41 H 0.060 0.940 42 H 0.014 0.986 43 H 0.020 0.980 44 H 0.072 0.928 45 H 0.016 0.984 46 H 0.017 0.983 47 H 0.081 0.919 48 H 0.010 0.990 49 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.634 2.486 15.044 16.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.153 4.153 3 C -0.017 4.017 4 H 0.090 0.910 5 C -0.160 4.160 6 C -0.080 4.080 7 C -0.128 4.128 8 C -0.131 4.131 9 C -0.097 4.097 10 C -0.169 4.169 11 C -0.141 4.141 12 C -0.135 4.135 13 N -0.306 5.306 14 C -0.059 4.059 15 C 0.071 3.929 16 C -0.175 4.175 17 C -0.187 4.187 18 C -0.544 4.544 19 H 0.068 0.932 20 C -0.135 4.135 21 N -0.523 5.523 22 Si 0.714 3.286 23 H -0.205 1.205 24 H -0.214 1.214 25 H -0.205 1.205 26 H 0.062 0.938 27 H 0.095 0.905 28 H 0.060 0.940 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.148 0.852 34 H 0.138 0.862 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.158 0.842 41 H 0.078 0.922 42 H 0.032 0.968 43 H 0.039 0.961 44 H 0.090 0.910 45 H 0.035 0.965 46 H 0.036 0.964 47 H 0.099 0.901 48 H 0.029 0.971 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.917 2.283 14.863 15.821 hybrid contribution 1.429 -0.279 -0.854 1.688 sum 6.346 2.004 14.010 15.510 Atomic orbital electron populations 1.21649 0.95254 1.00699 1.02438 1.21583 0.96915 0.95555 1.01264 1.21578 0.90181 0.95561 0.94408 0.91049 1.21453 0.98934 0.92688 1.02951 1.19875 0.98816 0.96313 0.93040 1.21354 0.98151 0.94401 0.98936 1.21062 0.99797 0.95453 0.96813 1.19872 1.00203 0.96323 0.93326 1.20760 1.00867 0.92755 1.02497 1.20925 1.00920 0.94589 0.97715 1.20959 1.00408 0.95297 0.96849 1.60744 1.62715 1.06178 1.00939 1.22250 0.95304 0.98065 0.90280 1.18055 0.93063 0.91996 0.89813 1.21625 0.97701 0.98133 1.00070 1.21821 0.97511 0.98984 1.00378 1.21080 1.27991 1.14754 0.90605 0.93234 1.24867 0.95048 0.94999 0.98561 1.69829 1.34524 1.25669 1.22261 0.86771 0.79161 0.79972 0.82688 1.20462 1.21419 1.20547 0.93845 0.90498 0.94005 0.91494 0.92903 0.91393 0.90374 0.85187 0.86164 0.91561 0.91569 0.91868 0.86622 0.86541 0.84195 0.92197 0.96769 0.96107 0.90951 0.96483 0.96405 0.90070 0.97073 0.93222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.84 37.15 0.37 -1.65 16 2 C -0.12 -1.60 5.15 -26.74 -0.14 -1.73 16 3 C 0.09 1.35 2.56 -67.71 -0.17 1.18 16 4 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 5 C -0.12 -1.65 4.62 -27.89 -0.13 -1.78 16 6 C -0.08 -1.13 4.72 -104.62 -0.49 -1.62 16 7 C -0.11 -1.68 8.39 -39.58 -0.33 -2.01 16 8 C -0.11 -1.58 9.70 -39.58 -0.38 -1.96 16 9 C -0.10 -1.21 5.88 -104.62 -0.62 -1.82 16 10 C -0.11 -1.08 10.01 36.00 0.36 -0.71 16 11 C -0.12 -1.48 9.70 -39.58 -0.38 -1.86 16 12 C -0.12 -1.47 9.70 -39.59 -0.38 -1.85 16 13 N -0.67 -11.67 4.78 -106.73 -0.51 -12.19 16 14 C 0.07 1.38 3.65 -3.82 -0.01 1.37 16 15 C 0.07 1.68 0.57 -155.66 -0.09 1.59 16 16 C -0.12 -2.84 8.09 37.16 0.30 -2.54 16 17 C -0.13 -3.01 7.92 37.15 0.29 -2.71 16 18 C -0.51 -13.41 8.01 -34.44 -0.28 -13.69 16 19 H 0.05 1.32 7.74 -52.49 -0.41 0.91 16 20 C 0.07 1.78 5.15 -17.82 -0.09 1.69 16 21 N -0.88 -24.39 9.35 55.43 0.52 -23.88 16 22 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 26 H 0.04 0.56 8.14 -51.92 -0.42 0.13 16 27 H 0.08 1.28 7.56 -51.93 -0.39 0.89 16 28 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 1.02 6.14 -51.93 -0.32 0.70 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.81 8.09 -51.93 -0.42 0.39 16 32 H 0.08 1.18 6.20 -51.93 -0.32 0.86 16 33 H 0.13 2.20 5.73 -52.48 -0.30 1.90 16 34 H 0.12 1.57 8.06 -52.48 -0.42 1.14 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 37 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 38 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 39 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 40 H 0.34 6.07 5.27 -39.29 -0.21 5.87 16 41 H 0.06 1.24 6.00 -51.94 -0.31 0.92 16 42 H 0.01 0.29 5.07 -51.93 -0.26 0.02 16 43 H 0.02 0.46 7.60 -51.93 -0.39 0.07 16 44 H 0.07 1.93 6.07 -51.92 -0.32 1.62 16 45 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.02 0.39 7.35 -51.93 -0.38 0.01 16 47 H 0.08 2.12 6.07 -51.93 -0.32 1.80 16 48 H 0.01 0.23 6.68 -51.93 -0.35 -0.12 16 49 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 367.74 15.07 5.54 5.54 Total: -1.00 -26.83 367.74 -10.13 -36.96 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -8.48 Total: 7.60 kcal Atomic # 6 Polarization: -27.93 SS G_CDS: -2.18 Total: -30.11 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: 0.01 Total: -36.06 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -26.83 -10.13 -36.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459729569.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.906 kcal (2) G-P(sol) polarization free energy of solvation -26.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds