Wall clock time and date at job start Tue Mar 31 2020 06:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47537 * 2 1 4 4 H 1.09002 * 109.47422 * 56.84060 * 3 2 1 5 5 C 1.52997 * 109.47437 * 176.84209 * 3 2 1 6 6 C 1.50699 * 109.47261 * 184.99777 * 5 3 2 7 7 C 1.38236 * 120.00269 * 269.72622 * 6 5 3 8 8 C 1.38241 * 120.00116 * 179.78477 * 7 6 5 9 9 C 1.38234 * 119.99883 * 0.46868 * 8 7 6 10 10 C 1.50695 * 120.00092 * 179.79007 * 9 8 7 11 11 C 1.38241 * 119.99861 * 359.76278 * 9 8 7 12 12 C 1.38230 * 119.99921 * 0.02798 * 11 9 8 13 13 N 1.46902 * 109.47002 * 296.84433 * 3 2 1 14 14 C 1.46904 * 110.99827 * 300.53667 * 13 3 2 15 15 C 1.53001 * 109.46707 * 175.62508 * 14 13 3 16 16 C 1.53003 * 109.46821 * 299.99426 * 15 14 13 17 17 C 1.52993 * 109.47688 * 59.99810 * 15 14 13 18 18 C 1.50710 * 109.46748 * 180.02562 * 15 14 13 19 19 H 1.07999 * 119.99634 * 359.97438 * 18 15 14 20 20 C 1.37875 * 119.99910 * 179.97438 * 18 15 14 21 21 N 1.31518 * 119.99865 * 0.02562 * 20 18 15 22 22 Si 1.86796 * 120.00132 * 179.97438 * 20 18 15 23 23 H 1.48507 * 109.46839 * 60.00293 * 22 20 18 24 24 H 1.48500 * 109.47518 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47337 * 300.00594 * 22 20 18 26 26 H 1.09007 * 109.47146 * 295.28469 * 1 2 3 27 27 H 1.09003 * 109.47219 * 55.28294 * 1 2 3 28 28 H 1.08999 * 109.47575 * 175.28357 * 1 2 3 29 29 H 1.09001 * 109.47238 * 240.00245 * 2 1 3 30 30 H 1.09005 * 109.47396 * 120.00045 * 2 1 3 31 31 H 1.09002 * 109.47433 * 305.00333 * 5 3 2 32 32 H 1.09004 * 109.46799 * 65.00281 * 5 3 2 33 33 H 1.08006 * 119.99993 * 0.02562 * 7 6 5 34 34 H 1.08003 * 119.99875 * 180.25465 * 8 7 6 35 35 H 1.09007 * 109.47006 * 269.97748 * 10 9 8 36 36 H 1.08993 * 109.47110 * 29.97205 * 10 9 8 37 37 H 1.08998 * 109.47304 * 149.97996 * 10 9 8 38 38 H 1.08002 * 119.99860 * 179.97438 * 11 9 8 39 39 H 1.08003 * 119.99575 * 179.97438 * 12 11 9 40 40 H 1.00901 * 111.00264 * 176.58214 * 13 3 2 41 41 H 1.08987 * 109.47229 * 55.62259 * 14 13 3 42 42 H 1.09004 * 109.47135 * 295.61733 * 14 13 3 43 43 H 1.08994 * 109.47078 * 60.00633 * 16 15 14 44 44 H 1.09007 * 109.46702 * 180.02562 * 16 15 14 45 45 H 1.09000 * 109.47430 * 300.00159 * 16 15 14 46 46 H 1.09004 * 109.47310 * 60.00067 * 17 15 14 47 47 H 1.08997 * 109.47447 * 179.97438 * 17 15 14 48 48 H 1.09003 * 109.47150 * 299.99724 * 17 15 14 49 49 H 0.96997 * 119.99857 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6312 1.9725 0.8603 5 6 3.5679 1.4432 0.0795 6 6 4.0639 2.8608 0.2031 7 6 4.3588 3.5915 -0.9326 8 6 4.8095 4.8935 -0.8193 9 6 4.9745 5.4614 0.4301 10 6 5.4704 6.8791 0.5539 11 6 4.6842 4.7291 1.5661 12 6 4.2294 3.4287 1.4526 13 7 1.6136 2.1126 -1.2358 14 6 2.1366 1.4169 -2.4193 15 6 1.5841 2.0769 -3.6842 16 6 0.0564 1.9935 -3.6773 17 6 2.0146 3.5444 -3.7236 18 6 2.1201 1.3628 -4.8984 19 1 2.7882 0.5226 -4.7795 20 6 1.7574 1.7821 -6.1608 21 7 0.9442 2.8055 -6.3054 22 14 2.4223 0.8975 -7.6657 23 1 2.0048 -0.5272 -7.6271 24 1 1.8850 1.5371 -8.8935 25 1 3.9050 0.9787 -7.6728 26 1 -0.3634 0.4390 0.9293 27 1 -0.3634 0.5853 -0.8447 28 1 -0.3634 -1.0241 -0.0845 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8868 0.8694 0.9497 32 1 3.9789 0.9920 -0.8237 33 1 4.2333 3.1466 -1.9088 34 1 5.0359 5.4657 -1.7068 35 1 6.5589 6.8796 0.6112 36 1 5.1522 7.4525 -0.3167 37 1 5.0588 7.3305 1.4566 38 1 4.8136 5.1726 2.5423 39 1 4.0030 2.8564 2.3401 40 1 1.8904 3.0829 -1.2350 41 1 1.8299 0.3715 -2.3912 42 1 3.2250 1.4763 -2.4242 43 1 -0.3316 2.5096 -2.7992 44 1 -0.3372 2.4633 -4.5787 45 1 -0.2504 0.9479 -3.6493 46 1 3.1030 3.6038 -3.7286 47 1 1.6214 4.0144 -4.6250 48 1 1.6266 4.0606 -2.8455 49 1 0.6893 3.1007 -7.1935 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459729569.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:30 Heat of formation + Delta-G solvation = -12.174054 kcal Electronic energy + Delta-G solvation = -24295.274966 eV Core-core repulsion = 21220.568766 eV Total energy + Delta-G solvation = -3074.706200 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.74918 -39.07318 -36.96060 -34.19939 -33.61781 -31.85808 -31.63734 -30.09894 -27.47542 -27.24156 -27.07419 -25.74447 -24.07371 -23.56264 -21.59196 -21.20976 -19.69488 -18.09040 -17.28788 -16.89085 -16.42335 -16.37646 -15.91289 -15.53526 -14.99656 -14.93126 -14.56455 -14.44868 -14.18933 -14.03163 -13.87749 -13.76087 -13.45811 -13.09685 -12.97118 -12.96833 -12.76092 -12.66877 -12.55017 -12.34917 -12.21657 -12.11382 -12.00428 -11.86049 -11.70139 -11.50513 -11.28585 -11.12767 -10.85968 -10.52871 -10.31152 -9.78839 -9.42627 -8.90746 -7.94139 -6.10671 0.46182 0.53818 1.42471 1.43372 1.49890 2.47137 2.86408 3.27637 3.57930 3.79668 3.95184 4.08412 4.16231 4.21267 4.33906 4.39068 4.45988 4.61764 4.62507 4.66043 4.72022 4.80481 4.84567 4.87551 4.90090 4.95467 5.00317 5.02430 5.12317 5.17029 5.20514 5.23651 5.25952 5.35233 5.38294 5.46491 5.51339 5.54558 5.59727 5.68524 5.72272 5.75864 5.80012 5.81103 6.18943 6.23996 6.35592 6.42685 6.55351 6.73841 7.00042 7.56610 9.03480 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.013839 B = 0.005156 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.777010 B = 5429.352913 C = 6745.525776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.113 4.113 3 C 0.096 3.904 4 H 0.085 0.915 5 C -0.113 4.113 6 C -0.092 4.092 7 C -0.130 4.130 8 C -0.132 4.132 9 C -0.100 4.100 10 C -0.111 4.111 11 C -0.123 4.123 12 C -0.116 4.116 13 N -0.676 5.676 14 C 0.091 3.909 15 C 0.063 3.937 16 C -0.101 4.101 17 C -0.112 4.112 18 C -0.523 4.523 19 H 0.042 0.958 20 C 0.023 3.977 21 N -0.903 5.903 22 Si 0.940 3.060 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.277 1.277 26 H 0.058 0.942 27 H 0.046 0.954 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.056 0.944 33 H 0.102 0.898 34 H 0.118 0.882 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.145 0.855 39 H 0.141 0.859 40 H 0.334 0.666 41 H 0.052 0.948 42 H 0.009 0.991 43 H 0.031 0.969 44 H 0.044 0.956 45 H 0.008 0.992 46 H 0.014 0.986 47 H 0.051 0.949 48 H 0.025 0.975 49 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.309 2.513 17.626 18.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.151 4.151 3 C -0.014 4.014 4 H 0.103 0.897 5 C -0.152 4.152 6 C -0.092 4.092 7 C -0.148 4.148 8 C -0.150 4.150 9 C -0.100 4.100 10 C -0.168 4.168 11 C -0.141 4.141 12 C -0.134 4.134 13 N -0.307 5.307 14 C -0.038 4.038 15 C 0.062 3.938 16 C -0.159 4.159 17 C -0.170 4.170 18 C -0.561 4.561 19 H 0.060 0.940 20 C -0.176 4.176 21 N -0.542 5.542 22 Si 0.767 3.233 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.202 1.202 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.099 0.901 31 H 0.110 0.890 32 H 0.075 0.925 33 H 0.120 0.880 34 H 0.136 0.864 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.163 0.837 39 H 0.159 0.841 40 H 0.154 0.846 41 H 0.070 0.930 42 H 0.027 0.973 43 H 0.050 0.950 44 H 0.063 0.937 45 H 0.028 0.972 46 H 0.034 0.966 47 H 0.070 0.930 48 H 0.044 0.956 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.596 2.304 17.453 18.473 hybrid contribution 1.227 -0.257 -1.597 2.030 sum 6.823 2.047 15.856 17.382 Atomic orbital electron populations 1.21597 0.95409 1.00822 1.01868 1.21585 0.96710 0.95089 1.01698 1.21654 0.90965 0.95777 0.93054 0.89735 1.21347 0.97958 0.92906 1.02974 1.19928 0.99498 0.96370 0.93378 1.21218 1.00042 0.95280 0.98273 1.21178 1.00658 0.95260 0.97873 1.20211 0.99334 0.97678 0.92752 1.20811 1.01613 0.90997 1.03338 1.21309 0.99679 0.94355 0.98780 1.21251 0.99523 0.95787 0.96844 1.60684 1.62754 1.05933 1.01284 1.21823 0.94689 0.97300 0.89952 1.18104 0.92673 0.92163 0.90824 1.21434 0.98098 0.97303 0.99095 1.21595 0.97131 0.98766 0.99475 1.21400 1.27945 1.14788 0.92013 0.93967 1.25501 0.95416 0.95702 1.00934 1.69969 1.35214 1.26520 1.22500 0.85906 0.78604 0.78985 0.79819 1.20171 1.21167 1.20239 0.92297 0.93510 0.93176 0.93377 0.90086 0.88985 0.92493 0.88021 0.86404 0.90395 0.91647 0.90142 0.83716 0.84082 0.84617 0.92977 0.97314 0.94964 0.93673 0.97244 0.96650 0.92968 0.95603 0.93455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.71 9.84 71.98 0.71 -3.00 16 2 C -0.11 -2.92 5.15 30.59 0.16 -2.76 16 3 C 0.10 2.61 2.56 44.91 0.11 2.72 16 4 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 5 C -0.11 -2.91 4.62 29.85 0.14 -2.77 16 6 C -0.09 -2.45 4.72 -19.87 -0.09 -2.55 16 7 C -0.13 -4.00 8.39 22.27 0.19 -3.81 16 8 C -0.13 -3.67 9.70 22.27 0.22 -3.45 16 9 C -0.10 -2.29 5.88 -19.87 -0.12 -2.41 16 10 C -0.11 -1.86 10.01 71.23 0.71 -1.15 16 11 C -0.12 -2.56 9.70 22.27 0.22 -2.35 16 12 C -0.12 -2.57 9.70 22.27 0.22 -2.36 16 13 N -0.68 -23.23 4.78 -491.57 -2.35 -25.58 16 14 C 0.09 3.71 3.65 86.30 0.32 4.03 16 15 C 0.06 3.05 0.57 -52.93 -0.03 3.02 16 16 C -0.10 -5.02 8.09 71.98 0.58 -4.44 16 17 C -0.11 -5.36 7.92 71.98 0.57 -4.79 16 18 C -0.52 -28.40 8.01 25.60 0.21 -28.20 16 19 H 0.04 2.30 7.74 -2.91 -0.02 2.28 16 20 C 0.02 1.28 5.15 84.65 0.44 1.72 16 21 N -0.90 -51.04 9.35 21.45 0.20 -50.84 16 22 Si 0.94 43.88 29.54 68.60 2.03 45.91 16 23 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 24 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 25 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 26 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 27 H 0.05 1.52 7.56 -2.39 -0.02 1.50 16 28 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.05 1.43 6.14 -2.39 -0.01 1.42 16 30 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 31 H 0.09 1.92 8.09 -2.39 -0.02 1.90 16 32 H 0.06 1.71 6.20 -2.38 -0.01 1.70 16 33 H 0.10 3.65 5.73 -2.91 -0.02 3.63 16 34 H 0.12 3.18 8.06 -2.91 -0.02 3.16 16 35 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.06 1.10 8.08 -2.39 -0.02 1.09 16 37 H 0.08 1.08 8.09 -2.39 -0.02 1.06 16 38 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 39 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 40 H 0.33 11.98 5.27 -89.69 -0.47 11.51 16 41 H 0.05 2.19 6.00 -2.39 -0.01 2.18 16 42 H 0.01 0.37 5.07 -2.39 -0.01 0.36 16 43 H 0.03 1.47 7.60 -2.39 -0.02 1.45 16 44 H 0.04 2.47 6.07 -2.38 -0.01 2.45 16 45 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 46 H 0.01 0.69 7.35 -2.39 -0.02 0.67 16 47 H 0.05 2.80 6.07 -2.39 -0.01 2.79 16 48 H 0.03 1.11 6.68 -2.39 -0.02 1.10 16 49 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 Total: -1.00 -58.56 367.74 4.85 -53.71 By element: Atomic # 1 Polarization: 28.91 SS G_CDS: 0.44 Total: 29.35 kcal Atomic # 6 Polarization: -57.08 SS G_CDS: 4.53 Total: -52.55 kcal Atomic # 7 Polarization: -74.27 SS G_CDS: -2.15 Total: -76.42 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -58.56 4.85 -53.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459729569.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.538 kcal (2) G-P(sol) polarization free energy of solvation -58.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds