Wall clock time and date at job start Tue Mar 31 2020 06:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47296 * 2 1 4 4 H 1.08990 * 109.47112 * 302.74988 * 3 2 1 5 5 C 1.52999 * 109.47000 * 182.75053 * 3 2 1 6 6 C 1.50704 * 109.46985 * 174.99757 * 5 3 2 7 7 C 1.38232 * 119.99705 * 90.00217 * 6 5 3 8 8 C 1.38235 * 120.00116 * 179.97438 * 7 6 5 9 9 C 1.38240 * 120.00008 * 0.27764 * 8 7 6 10 10 C 1.50692 * 120.00161 * 179.72410 * 9 8 7 11 11 C 1.38244 * 119.99394 * 359.51352 * 9 8 7 12 12 C 1.38227 * 120.00114 * 0.44245 * 11 9 8 13 13 N 1.46900 * 109.47138 * 62.75643 * 3 2 1 14 14 C 1.46902 * 111.00302 * 59.40484 * 13 3 2 15 15 C 1.52998 * 109.46715 * 184.27570 * 14 13 3 16 16 C 1.53007 * 109.47061 * 299.99596 * 15 14 13 17 17 C 1.52994 * 109.47755 * 59.99875 * 15 14 13 18 18 C 1.50704 * 109.46765 * 180.02562 * 15 14 13 19 19 H 1.08006 * 120.00191 * 359.97438 * 18 15 14 20 20 C 1.37878 * 120.00135 * 179.97438 * 18 15 14 21 21 N 1.31515 * 119.99887 * 359.97438 * 20 18 15 22 22 Si 1.86796 * 119.99956 * 179.97438 * 20 18 15 23 23 H 1.48497 * 109.47265 * 60.00211 * 22 20 18 24 24 H 1.48502 * 109.46899 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47318 * 299.99858 * 22 20 18 26 26 H 1.08995 * 109.46900 * 294.92328 * 1 2 3 27 27 H 1.08995 * 109.46535 * 54.92023 * 1 2 3 28 28 H 1.08996 * 109.47280 * 174.92062 * 1 2 3 29 29 H 1.08998 * 109.47402 * 239.99965 * 2 1 3 30 30 H 1.09002 * 109.47037 * 119.99520 * 2 1 3 31 31 H 1.09004 * 109.47118 * 55.00010 * 5 3 2 32 32 H 1.08997 * 109.47444 * 295.00115 * 5 3 2 33 33 H 1.07997 * 120.00425 * 359.97438 * 7 6 5 34 34 H 1.08003 * 120.00264 * 180.02562 * 8 7 6 35 35 H 1.09000 * 109.47257 * 90.00696 * 10 9 8 36 36 H 1.09000 * 109.47040 * 210.00533 * 10 9 8 37 37 H 1.08997 * 109.47404 * 329.99868 * 10 9 8 38 38 H 1.08000 * 119.99659 * 180.27667 * 11 9 8 39 39 H 1.08000 * 119.99852 * 179.83740 * 12 11 9 40 40 H 1.00900 * 110.99811 * 183.36463 * 13 3 2 41 41 H 1.09000 * 109.47077 * 304.27079 * 14 13 3 42 42 H 1.08999 * 109.46647 * 64.27081 * 14 13 3 43 43 H 1.08991 * 109.47016 * 60.00475 * 16 15 14 44 44 H 1.09003 * 109.47137 * 180.02562 * 16 15 14 45 45 H 1.09001 * 109.47198 * 300.00344 * 16 15 14 46 46 H 1.09000 * 109.47127 * 59.99823 * 17 15 14 47 47 H 1.09003 * 109.47284 * 179.97438 * 17 15 14 48 48 H 1.08996 * 109.47120 * 300.00426 * 17 15 14 49 49 H 0.96996 * 120.00339 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6371 1.9704 -0.8642 5 6 3.5685 1.4430 -0.0692 6 6 4.0652 2.8604 -0.1931 7 6 4.3471 3.5957 0.9430 8 6 4.8033 4.8956 0.8295 9 6 4.9722 5.4623 -0.4200 10 6 5.4635 6.8815 -0.5437 11 6 4.6944 4.7254 -1.5563 12 6 4.2391 3.4253 -1.4427 13 7 1.6055 2.1155 1.2314 14 6 2.1195 1.4219 2.4200 15 6 1.5606 2.0865 3.6796 16 6 1.9944 3.5533 3.7177 17 6 0.0328 2.0068 3.6635 18 6 2.0884 1.3754 4.8990 19 1 2.7554 0.5334 4.7867 20 6 1.7198 1.7997 6.1581 21 7 0.9080 2.8254 6.2949 22 14 2.3734 0.9178 7.6694 23 1 3.8563 0.9947 7.6848 24 1 1.8311 1.5629 8.8921 25 1 1.9519 -0.5057 7.6329 26 1 -0.3633 0.4330 0.9319 27 1 -0.3632 0.5906 -0.8410 28 1 -0.3633 -1.0236 -0.0910 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8931 0.8672 -0.9360 32 1 3.9734 0.9940 0.8376 33 1 4.2109 3.1546 1.9194 34 1 5.0239 5.4700 1.7172 35 1 6.5523 6.8858 -0.5957 36 1 5.0547 7.3299 -1.4492 37 1 5.1389 7.4553 0.3243 38 1 4.8306 5.1666 -2.5326 39 1 4.0196 2.8505 -2.3304 40 1 1.8831 3.0856 1.2304 41 1 1.8105 0.3770 2.3929 42 1 3.2080 1.4788 2.4314 43 1 1.6131 4.0679 2.8358 44 1 1.5966 4.0267 4.6154 45 1 3.0829 3.6102 3.7293 46 1 -0.2762 0.9619 3.6364 47 1 -0.3652 2.4799 4.5612 48 1 -0.3485 2.5214 2.7815 49 1 0.6484 3.1237 7.1805 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459729571.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:34 Heat of formation + Delta-G solvation = -1.304734 kcal Electronic energy + Delta-G solvation = -24298.142672 eV Core-core repulsion = 21223.907802 eV Total energy + Delta-G solvation = -3074.234871 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.66314 -37.74233 -35.27516 -33.15889 -31.87735 -30.75399 -30.30656 -28.91922 -25.98486 -25.52226 -25.21476 -24.15061 -23.00277 -22.54562 -20.57744 -19.73881 -18.08107 -16.35824 -15.96679 -15.44328 -15.33433 -14.94063 -14.53101 -14.23695 -13.77213 -13.51339 -13.45706 -13.24867 -12.88792 -12.77132 -12.48493 -12.29603 -12.09112 -12.00337 -11.77023 -11.39854 -11.20599 -11.16714 -10.98702 -10.85331 -10.72451 -10.63338 -10.48849 -10.42606 -10.17790 -9.99959 -9.94236 -9.28644 -9.00501 -8.76859 -8.56692 -8.38360 -8.24223 -7.52268 -5.87439 -3.97769 1.46029 1.55438 3.33995 3.39005 3.41604 3.87111 4.46531 4.82801 4.86710 4.95886 5.01662 5.15088 5.23836 5.36046 5.37876 5.47650 5.54318 5.55632 5.62747 5.66689 5.79108 5.85324 5.93225 5.95186 6.11184 6.17806 6.24192 6.24998 6.30100 6.45825 6.51851 6.57719 6.61238 6.73378 6.78514 6.82894 6.85264 6.96893 7.15367 7.17662 7.24465 7.45132 7.54926 7.80453 7.82228 7.91264 8.08532 8.27673 8.40625 8.60811 9.04000 9.67088 11.12712 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.013843 B = 0.005159 C = 0.004152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.131691 B = 5426.234143 C = 6741.502334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.116 4.116 3 C 0.094 3.906 4 H 0.071 0.929 5 C -0.121 4.121 6 C -0.080 4.080 7 C -0.111 4.111 8 C -0.113 4.113 9 C -0.097 4.097 10 C -0.112 4.112 11 C -0.123 4.123 12 C -0.117 4.117 13 N -0.674 5.674 14 C 0.069 3.931 15 C 0.071 3.929 16 C -0.129 4.129 17 C -0.117 4.117 18 C -0.506 4.506 19 H 0.049 0.951 20 C 0.066 3.934 21 N -0.884 5.884 22 Si 0.886 3.114 23 H -0.280 1.280 24 H -0.288 1.288 25 H -0.279 1.279 26 H 0.072 0.928 27 H 0.045 0.955 28 H 0.040 0.960 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.130 0.870 34 H 0.120 0.880 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.338 0.662 41 H 0.060 0.940 42 H 0.014 0.986 43 H 0.010 0.990 44 H 0.081 0.919 45 H 0.017 0.983 46 H 0.016 0.984 47 H 0.072 0.928 48 H 0.020 0.980 49 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.715 2.423 -15.017 16.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.153 4.153 3 C -0.017 4.017 4 H 0.089 0.911 5 C -0.160 4.160 6 C -0.081 4.081 7 C -0.128 4.128 8 C -0.131 4.131 9 C -0.097 4.097 10 C -0.169 4.169 11 C -0.142 4.142 12 C -0.135 4.135 13 N -0.306 5.306 14 C -0.059 4.059 15 C 0.071 3.929 16 C -0.187 4.187 17 C -0.175 4.175 18 C -0.544 4.544 19 H 0.068 0.932 20 C -0.135 4.135 21 N -0.523 5.523 22 Si 0.714 3.286 23 H -0.205 1.205 24 H -0.214 1.214 25 H -0.205 1.205 26 H 0.091 0.909 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.148 0.852 34 H 0.138 0.862 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.158 0.842 41 H 0.078 0.922 42 H 0.032 0.968 43 H 0.029 0.971 44 H 0.099 0.901 45 H 0.036 0.964 46 H 0.035 0.965 47 H 0.090 0.910 48 H 0.039 0.961 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.997 2.222 -14.842 15.817 hybrid contribution 1.422 -0.270 0.868 1.688 sum 6.419 1.952 -13.974 15.501 Atomic orbital electron populations 1.21614 0.95213 0.99977 1.02951 1.21586 0.96926 0.95563 1.01261 1.21595 0.90134 0.95500 0.94481 0.91051 1.21456 0.98927 0.92694 1.02965 1.19876 0.98846 0.96293 0.93038 1.21354 0.98141 0.94403 0.98950 1.21063 0.99763 0.95491 0.96815 1.19874 1.00239 0.96280 0.93324 1.20759 1.00886 0.92736 1.02498 1.20924 1.00952 0.94566 0.97713 1.20958 1.00387 0.95321 0.96845 1.60746 1.62731 1.06154 1.00942 1.22249 0.95367 0.98078 0.90195 1.18054 0.93035 0.91988 0.89851 1.21825 0.97535 0.99013 1.00331 1.21622 0.97727 0.98141 1.00029 1.21081 1.28111 1.14635 0.90606 0.93234 1.24868 0.95050 0.94991 0.98567 1.69826 1.34478 1.25501 1.22479 0.86772 0.79121 0.79955 0.82745 1.20546 1.21420 1.20461 0.90862 0.93624 0.94126 0.92887 0.91503 0.91391 0.90373 0.85173 0.86165 0.91563 0.91865 0.91568 0.86623 0.86540 0.84205 0.92208 0.96772 0.97079 0.90057 0.96403 0.96494 0.90960 0.96090 0.93220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.71 37.16 0.36 -1.61 16 2 C -0.12 -1.60 5.14 -26.73 -0.14 -1.73 16 3 C 0.09 1.36 2.56 -67.71 -0.17 1.18 16 4 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 5 C -0.12 -1.65 4.62 -27.88 -0.13 -1.78 16 6 C -0.08 -1.13 4.72 -104.62 -0.49 -1.62 16 7 C -0.11 -1.68 8.37 -39.58 -0.33 -2.01 16 8 C -0.11 -1.58 9.70 -39.58 -0.38 -1.97 16 9 C -0.10 -1.21 5.88 -104.62 -0.62 -1.82 16 10 C -0.11 -1.08 10.01 36.00 0.36 -0.72 16 11 C -0.12 -1.48 9.70 -39.58 -0.38 -1.86 16 12 C -0.12 -1.47 9.70 -39.59 -0.38 -1.85 16 13 N -0.67 -11.69 4.94 -106.73 -0.53 -12.22 16 14 C 0.07 1.38 3.64 -3.82 -0.01 1.37 16 15 C 0.07 1.68 0.57 -155.66 -0.09 1.59 16 16 C -0.13 -3.01 7.91 37.16 0.29 -2.72 16 17 C -0.12 -2.84 8.09 37.15 0.30 -2.54 16 18 C -0.51 -13.41 8.01 -34.44 -0.28 -13.69 16 19 H 0.05 1.32 7.74 -52.48 -0.41 0.91 16 20 C 0.07 1.78 5.15 -17.82 -0.09 1.69 16 21 N -0.88 -24.40 9.35 55.43 0.52 -23.88 16 22 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 H 0.07 1.22 7.84 -51.93 -0.41 0.81 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 1.02 6.16 -51.93 -0.32 0.70 16 31 H 0.07 0.81 8.09 -51.93 -0.42 0.39 16 32 H 0.08 1.18 6.20 -51.93 -0.32 0.86 16 33 H 0.13 2.21 5.68 -52.49 -0.30 1.91 16 34 H 0.12 1.57 8.06 -52.48 -0.42 1.15 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 37 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 38 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 40 H 0.34 6.08 5.25 -39.29 -0.21 5.87 16 41 H 0.06 1.23 6.01 -51.93 -0.31 0.92 16 42 H 0.01 0.29 5.08 -51.93 -0.26 0.02 16 43 H 0.01 0.22 6.67 -51.93 -0.35 -0.12 16 44 H 0.08 2.12 6.07 -51.93 -0.32 1.81 16 45 H 0.02 0.39 7.32 -51.93 -0.38 0.01 16 46 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.07 1.93 6.07 -51.93 -0.32 1.62 16 48 H 0.02 0.47 7.60 -51.93 -0.39 0.07 16 49 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 367.92 15.07 5.54 5.54 Total: -1.00 -26.85 367.92 -10.16 -37.00 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -8.49 Total: 7.56 kcal Atomic # 6 Polarization: -27.90 SS G_CDS: -2.19 Total: -30.09 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: -0.01 Total: -36.09 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -26.85 -10.16 -37.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459729571.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.699 kcal (2) G-P(sol) polarization free energy of solvation -26.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds