Wall clock time and date at job start Tue Mar 31 2020 06:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47296 * 2 1 4 4 H 1.08990 * 109.47112 * 302.74988 * 3 2 1 5 5 C 1.52999 * 109.47000 * 182.75053 * 3 2 1 6 6 C 1.50704 * 109.46985 * 174.99757 * 5 3 2 7 7 C 1.38232 * 119.99705 * 90.00217 * 6 5 3 8 8 C 1.38235 * 120.00116 * 179.97438 * 7 6 5 9 9 C 1.38240 * 120.00008 * 0.27764 * 8 7 6 10 10 C 1.50692 * 120.00161 * 179.72410 * 9 8 7 11 11 C 1.38244 * 119.99394 * 359.51352 * 9 8 7 12 12 C 1.38227 * 120.00114 * 0.44245 * 11 9 8 13 13 N 1.46900 * 109.47138 * 62.75643 * 3 2 1 14 14 C 1.46902 * 111.00302 * 59.40484 * 13 3 2 15 15 C 1.52998 * 109.46715 * 184.27570 * 14 13 3 16 16 C 1.53007 * 109.47061 * 299.99596 * 15 14 13 17 17 C 1.52994 * 109.47755 * 59.99875 * 15 14 13 18 18 C 1.50704 * 109.46765 * 180.02562 * 15 14 13 19 19 H 1.08006 * 120.00191 * 359.97438 * 18 15 14 20 20 C 1.37878 * 120.00135 * 179.97438 * 18 15 14 21 21 N 1.31515 * 119.99887 * 359.97438 * 20 18 15 22 22 Si 1.86796 * 119.99956 * 179.97438 * 20 18 15 23 23 H 1.48497 * 109.47265 * 60.00211 * 22 20 18 24 24 H 1.48502 * 109.46899 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47318 * 299.99858 * 22 20 18 26 26 H 1.08995 * 109.46900 * 294.92328 * 1 2 3 27 27 H 1.08995 * 109.46535 * 54.92023 * 1 2 3 28 28 H 1.08996 * 109.47280 * 174.92062 * 1 2 3 29 29 H 1.08998 * 109.47402 * 239.99965 * 2 1 3 30 30 H 1.09002 * 109.47037 * 119.99520 * 2 1 3 31 31 H 1.09004 * 109.47118 * 55.00010 * 5 3 2 32 32 H 1.08997 * 109.47444 * 295.00115 * 5 3 2 33 33 H 1.07997 * 120.00425 * 359.97438 * 7 6 5 34 34 H 1.08003 * 120.00264 * 180.02562 * 8 7 6 35 35 H 1.09000 * 109.47257 * 90.00696 * 10 9 8 36 36 H 1.09000 * 109.47040 * 210.00533 * 10 9 8 37 37 H 1.08997 * 109.47404 * 329.99868 * 10 9 8 38 38 H 1.08000 * 119.99659 * 180.27667 * 11 9 8 39 39 H 1.08000 * 119.99852 * 179.83740 * 12 11 9 40 40 H 1.00900 * 110.99811 * 183.36463 * 13 3 2 41 41 H 1.09000 * 109.47077 * 304.27079 * 14 13 3 42 42 H 1.08999 * 109.46647 * 64.27081 * 14 13 3 43 43 H 1.08991 * 109.47016 * 60.00475 * 16 15 14 44 44 H 1.09003 * 109.47137 * 180.02562 * 16 15 14 45 45 H 1.09001 * 109.47198 * 300.00344 * 16 15 14 46 46 H 1.09000 * 109.47127 * 59.99823 * 17 15 14 47 47 H 1.09003 * 109.47284 * 179.97438 * 17 15 14 48 48 H 1.08996 * 109.47120 * 300.00426 * 17 15 14 49 49 H 0.96996 * 120.00339 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6371 1.9704 -0.8642 5 6 3.5685 1.4430 -0.0692 6 6 4.0652 2.8604 -0.1931 7 6 4.3471 3.5957 0.9430 8 6 4.8033 4.8956 0.8295 9 6 4.9722 5.4623 -0.4200 10 6 5.4635 6.8815 -0.5437 11 6 4.6944 4.7254 -1.5563 12 6 4.2391 3.4253 -1.4427 13 7 1.6055 2.1155 1.2314 14 6 2.1195 1.4219 2.4200 15 6 1.5606 2.0865 3.6796 16 6 1.9944 3.5533 3.7177 17 6 0.0328 2.0068 3.6635 18 6 2.0884 1.3754 4.8990 19 1 2.7554 0.5334 4.7867 20 6 1.7198 1.7997 6.1581 21 7 0.9080 2.8254 6.2949 22 14 2.3734 0.9178 7.6694 23 1 3.8563 0.9947 7.6848 24 1 1.8311 1.5629 8.8921 25 1 1.9519 -0.5057 7.6329 26 1 -0.3633 0.4330 0.9319 27 1 -0.3632 0.5906 -0.8410 28 1 -0.3633 -1.0236 -0.0910 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8931 0.8672 -0.9360 32 1 3.9734 0.9940 0.8376 33 1 4.2109 3.1546 1.9194 34 1 5.0239 5.4700 1.7172 35 1 6.5523 6.8858 -0.5957 36 1 5.0547 7.3299 -1.4492 37 1 5.1389 7.4553 0.3243 38 1 4.8306 5.1666 -2.5326 39 1 4.0196 2.8505 -2.3304 40 1 1.8831 3.0856 1.2304 41 1 1.8105 0.3770 2.3929 42 1 3.2080 1.4788 2.4314 43 1 1.6131 4.0679 2.8358 44 1 1.5966 4.0267 4.6154 45 1 3.0829 3.6102 3.7293 46 1 -0.2762 0.9619 3.6364 47 1 -0.3652 2.4799 4.5612 48 1 -0.3485 2.5214 2.7815 49 1 0.6484 3.1237 7.1805 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459729571.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:33 Heat of formation + Delta-G solvation = -12.503951 kcal Electronic energy + Delta-G solvation = -24298.628307 eV Core-core repulsion = 21223.907802 eV Total energy + Delta-G solvation = -3074.720505 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.75092 -39.07243 -36.96141 -34.19895 -33.62008 -31.86078 -31.63962 -30.09845 -27.47650 -27.24336 -27.07601 -25.74300 -24.07293 -23.56252 -21.59342 -21.21490 -19.69957 -18.09259 -17.28994 -16.88958 -16.42229 -16.37596 -15.90957 -15.53036 -14.99844 -14.93576 -14.56511 -14.44710 -14.19426 -14.04007 -13.87704 -13.76158 -13.45743 -13.10114 -12.97475 -12.96027 -12.76352 -12.66517 -12.54752 -12.35092 -12.21194 -12.11307 -12.00398 -11.86331 -11.69998 -11.50816 -11.29699 -11.13083 -10.86023 -10.53049 -10.31236 -9.78940 -9.42686 -8.90660 -7.94195 -6.10737 0.46141 0.53805 1.42445 1.43336 1.49859 2.47092 2.86377 3.27575 3.57713 3.79631 3.95194 4.08436 4.16309 4.21242 4.34068 4.38681 4.45629 4.61727 4.62382 4.66798 4.72007 4.80528 4.84494 4.87245 4.89829 4.95400 5.00255 5.02450 5.12132 5.16929 5.20336 5.23540 5.26106 5.35156 5.38200 5.46626 5.51304 5.53945 5.59366 5.67530 5.72186 5.75837 5.79994 5.80928 6.18933 6.23897 6.35511 6.42634 6.55282 6.73849 6.99982 7.56540 9.03441 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.013843 B = 0.005159 C = 0.004152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.131691 B = 5426.234143 C = 6741.502334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.113 4.113 3 C 0.096 3.904 4 H 0.085 0.915 5 C -0.113 4.113 6 C -0.092 4.092 7 C -0.130 4.130 8 C -0.132 4.132 9 C -0.100 4.100 10 C -0.111 4.111 11 C -0.123 4.123 12 C -0.116 4.116 13 N -0.676 5.676 14 C 0.091 3.909 15 C 0.063 3.937 16 C -0.112 4.112 17 C -0.101 4.101 18 C -0.523 4.523 19 H 0.042 0.958 20 C 0.023 3.977 21 N -0.903 5.903 22 Si 0.940 3.060 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.276 1.276 26 H 0.041 0.959 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.081 0.919 30 H 0.048 0.952 31 H 0.092 0.908 32 H 0.056 0.944 33 H 0.102 0.898 34 H 0.118 0.882 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.145 0.855 39 H 0.141 0.859 40 H 0.334 0.666 41 H 0.052 0.948 42 H 0.009 0.991 43 H 0.025 0.975 44 H 0.052 0.948 45 H 0.014 0.986 46 H 0.008 0.992 47 H 0.044 0.956 48 H 0.031 0.969 49 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.411 2.438 -17.603 18.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.151 4.151 3 C -0.015 4.015 4 H 0.103 0.897 5 C -0.152 4.152 6 C -0.092 4.092 7 C -0.148 4.148 8 C -0.150 4.150 9 C -0.100 4.100 10 C -0.168 4.168 11 C -0.141 4.141 12 C -0.134 4.134 13 N -0.307 5.307 14 C -0.037 4.037 15 C 0.062 3.938 16 C -0.170 4.170 17 C -0.159 4.159 18 C -0.561 4.561 19 H 0.060 0.940 20 C -0.176 4.176 21 N -0.542 5.542 22 Si 0.767 3.233 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.202 1.202 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.100 0.900 30 H 0.066 0.934 31 H 0.110 0.890 32 H 0.075 0.925 33 H 0.120 0.880 34 H 0.136 0.864 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.163 0.837 39 H 0.159 0.841 40 H 0.154 0.846 41 H 0.070 0.930 42 H 0.027 0.973 43 H 0.044 0.956 44 H 0.070 0.930 45 H 0.034 0.966 46 H 0.027 0.973 47 H 0.063 0.937 48 H 0.050 0.950 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.695 2.231 -17.436 18.477 hybrid contribution 1.214 -0.244 1.613 2.033 sum 6.910 1.987 -15.823 17.380 Atomic orbital electron populations 1.21562 0.95386 1.00721 1.01712 1.21588 0.96702 0.95089 1.01721 1.21676 0.90915 0.95727 0.93134 0.89729 1.21350 0.97960 0.92914 1.02974 1.19929 0.99533 0.96346 0.93375 1.21217 1.00029 0.95293 0.98285 1.21178 1.00626 0.95299 0.97875 1.20213 0.99363 0.97644 0.92751 1.20810 1.01637 0.90970 1.03341 1.21308 0.99711 0.94329 0.98778 1.21250 0.99492 0.95815 0.96841 1.60685 1.62805 1.05919 1.01267 1.21821 0.94731 0.97303 0.89892 1.18103 0.92655 0.92165 0.90841 1.21598 0.97144 0.98787 0.99442 1.21430 0.98119 0.97308 0.99060 1.21400 1.28062 1.14666 0.92022 0.93966 1.25502 0.95401 0.95687 1.00962 1.69966 1.35161 1.26350 1.22728 0.85906 0.78584 0.78975 0.79848 1.20235 1.21168 1.20167 0.93984 0.92427 0.92900 0.90038 0.93358 0.88973 0.92496 0.88015 0.86409 0.90391 0.90140 0.91651 0.83715 0.84075 0.84627 0.92987 0.97318 0.95617 0.92955 0.96647 0.97250 0.93680 0.94965 0.93451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.63 9.71 71.98 0.70 -2.93 16 2 C -0.11 -2.92 5.14 30.60 0.16 -2.77 16 3 C 0.10 2.61 2.56 44.92 0.12 2.72 16 4 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 5 C -0.11 -2.92 4.62 29.85 0.14 -2.78 16 6 C -0.09 -2.46 4.72 -19.87 -0.09 -2.55 16 7 C -0.13 -4.01 8.37 22.27 0.19 -3.82 16 8 C -0.13 -3.68 9.70 22.27 0.22 -3.46 16 9 C -0.10 -2.29 5.88 -19.87 -0.12 -2.41 16 10 C -0.11 -1.86 10.01 71.23 0.71 -1.15 16 11 C -0.12 -2.56 9.70 22.27 0.22 -2.35 16 12 C -0.12 -2.57 9.70 22.27 0.22 -2.36 16 13 N -0.68 -23.27 4.94 -491.57 -2.43 -25.69 16 14 C 0.09 3.72 3.64 86.30 0.31 4.03 16 15 C 0.06 3.05 0.57 -52.93 -0.03 3.02 16 16 C -0.11 -5.36 7.91 71.98 0.57 -4.79 16 17 C -0.10 -5.02 8.09 71.98 0.58 -4.43 16 18 C -0.52 -28.42 8.01 25.60 0.21 -28.21 16 19 H 0.04 2.30 7.74 -2.91 -0.02 2.28 16 20 C 0.02 1.28 5.15 84.65 0.44 1.72 16 21 N -0.90 -51.06 9.35 21.45 0.20 -50.86 16 22 Si 0.94 43.89 29.54 68.60 2.03 45.92 16 23 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 24 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 25 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 26 H 0.04 1.37 7.84 -2.39 -0.02 1.35 16 27 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.05 1.43 6.16 -2.39 -0.01 1.42 16 31 H 0.09 1.92 8.09 -2.39 -0.02 1.90 16 32 H 0.06 1.71 6.20 -2.39 -0.01 1.70 16 33 H 0.10 3.65 5.68 -2.91 -0.02 3.64 16 34 H 0.12 3.19 8.06 -2.91 -0.02 3.16 16 35 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.08 1.08 8.09 -2.39 -0.02 1.06 16 37 H 0.06 1.11 8.09 -2.39 -0.02 1.09 16 38 H 0.15 2.15 8.06 -2.91 -0.02 2.12 16 39 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 40 H 0.33 11.99 5.25 -89.69 -0.47 11.52 16 41 H 0.05 2.19 6.01 -2.39 -0.01 2.18 16 42 H 0.01 0.37 5.08 -2.39 -0.01 0.36 16 43 H 0.02 1.11 6.67 -2.39 -0.02 1.09 16 44 H 0.05 2.81 6.07 -2.39 -0.01 2.80 16 45 H 0.01 0.69 7.32 -2.39 -0.02 0.68 16 46 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 47 H 0.04 2.47 6.07 -2.39 -0.01 2.45 16 48 H 0.03 1.47 7.60 -2.39 -0.02 1.45 16 49 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 Total: -1.00 -58.62 367.92 4.76 -53.86 By element: Atomic # 1 Polarization: 28.84 SS G_CDS: 0.44 Total: 29.28 kcal Atomic # 6 Polarization: -57.03 SS G_CDS: 4.52 Total: -52.51 kcal Atomic # 7 Polarization: -74.32 SS G_CDS: -2.23 Total: -76.55 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -58.62 4.76 -53.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459729571.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.358 kcal (2) G-P(sol) polarization free energy of solvation -58.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds