Wall clock time and date at job start Tue Mar 31 2020 06:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08994 * 109.47037 * 2 1 4 4 C 1.53001 * 109.46847 * 120.00493 * 2 1 3 5 5 C 1.53000 * 109.46886 * 294.99397 * 4 2 1 6 6 C 1.50703 * 109.46912 * 180.02562 * 5 4 2 7 7 C 1.38234 * 119.99770 * 269.72838 * 6 5 4 8 8 C 1.38239 * 119.99901 * 179.76875 * 7 6 5 9 9 C 1.38240 * 119.99645 * 0.50240 * 8 7 6 10 10 C 1.38227 * 120.00205 * 359.74956 * 9 8 7 11 11 C 1.38232 * 119.99860 * 90.00280 * 6 5 4 12 12 C 1.53000 * 109.46668 * 240.00135 * 2 1 3 13 13 N 1.46898 * 109.47200 * 65.00419 * 12 2 1 14 14 C 1.46896 * 111.00135 * 179.97438 * 13 12 2 15 15 C 1.52997 * 109.47480 * 179.97438 * 14 13 12 16 16 C 1.53006 * 109.47034 * 300.00130 * 15 14 13 17 17 C 1.53000 * 109.47145 * 60.00033 * 15 14 13 18 18 C 1.50699 * 109.47386 * 180.02562 * 15 14 13 19 19 H 1.07996 * 119.99931 * 359.97438 * 18 15 14 20 20 C 1.37879 * 120.00038 * 180.02562 * 18 15 14 21 21 N 1.31518 * 120.00186 * 359.97438 * 20 18 15 22 22 Si 1.86802 * 120.00066 * 179.97438 * 20 18 15 23 23 H 1.48499 * 109.46805 * 60.00139 * 22 20 18 24 24 H 1.48495 * 109.47182 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47297 * 300.00500 * 22 20 18 26 26 H 1.08994 * 109.47037 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46480 * 299.99905 * 1 2 3 28 28 H 1.09004 * 109.46932 * 59.99359 * 1 2 3 29 29 H 1.09001 * 109.46652 * 174.99742 * 4 2 1 30 30 H 1.08992 * 109.47514 * 54.99831 * 4 2 1 31 31 H 1.09002 * 109.47398 * 300.00496 * 5 4 2 32 32 H 1.09001 * 109.47194 * 60.00677 * 5 4 2 33 33 H 1.08001 * 120.00330 * 359.97438 * 7 6 5 34 34 H 1.08001 * 119.99843 * 180.23314 * 8 7 6 35 35 H 1.08002 * 119.99612 * 179.72381 * 9 8 7 36 36 H 1.07996 * 120.00251 * 179.97438 * 10 9 8 37 37 H 1.07998 * 120.00407 * 0.02562 * 11 6 5 38 38 H 1.09001 * 109.46867 * 184.99750 * 12 2 1 39 39 H 1.09003 * 109.47171 * 305.00209 * 12 2 1 40 40 H 1.00902 * 111.00047 * 56.04328 * 13 12 2 41 41 H 1.09001 * 109.47208 * 299.99828 * 14 13 12 42 42 H 1.09010 * 109.47358 * 60.00100 * 14 13 12 43 43 H 1.08998 * 109.46935 * 59.99953 * 16 15 14 44 44 H 1.09004 * 109.46605 * 179.97438 * 16 15 14 45 45 H 1.08999 * 109.47193 * 299.99802 * 16 15 14 46 46 H 1.09001 * 109.47036 * 60.00239 * 17 15 14 47 47 H 1.09001 * 109.47557 * 180.02562 * 17 15 14 48 48 H 1.09003 * 109.47160 * 299.99834 * 17 15 14 49 49 H 0.96998 * 119.99829 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6353 0.0688 2.4953 6 6 2.1381 -0.6414 3.7257 7 6 1.3437 -1.5823 4.3538 8 6 1.8068 -2.2372 5.4796 9 6 3.0602 -1.9437 5.9834 10 6 3.8525 -0.9991 5.3584 11 6 3.3915 -0.3478 4.2295 12 6 2.0400 -0.7212 -1.2493 13 7 1.6514 0.0375 -2.4456 14 6 2.1257 -0.6264 -3.6672 15 6 1.7023 0.1911 -4.8892 16 6 0.1765 0.2990 -4.9269 17 6 2.3107 1.5922 -4.8012 18 6 2.1883 -0.4904 -6.1424 19 1 2.7440 -1.4139 -6.0740 20 6 1.9245 0.0658 -7.3761 21 7 1.2483 1.1907 -7.4594 22 14 2.5276 -0.7785 -8.9295 23 1 1.9366 -2.1382 -9.0151 24 1 2.1176 0.0155 -10.1155 25 1 4.0083 -0.8838 -8.8927 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8901 28 1 -0.3633 0.5140 -0.8900 29 1 3.1263 -0.7996 1.2055 30 1 1.6054 -1.7198 1.2951 31 1 2.0700 1.0674 2.4494 32 1 0.5490 0.1471 2.5390 33 1 0.3625 -1.8081 3.9630 34 1 1.1876 -2.9750 5.9681 35 1 3.4202 -2.4522 6.8656 36 1 4.8315 -0.7694 5.7522 37 1 4.0102 0.3908 3.7416 38 1 3.1263 -0.7994 -1.2057 39 1 1.6053 -1.7198 -1.2952 40 1 1.9882 0.9874 -2.3966 41 1 3.2126 -0.7036 -3.6401 42 1 1.6919 -1.6245 -3.7302 43 1 -0.1754 0.7917 -4.0206 44 1 -0.1250 0.8818 -5.7974 45 1 -0.2569 -0.6992 -4.9896 46 1 3.3976 1.5153 -4.7744 47 1 2.0087 2.1747 -5.6716 48 1 1.9587 2.0849 -3.8949 49 1 1.0624 1.5817 -8.3274 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459729759.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:22 Heat of formation + Delta-G solvation = -7.608250 kcal Electronic energy + Delta-G solvation = -22487.601805 eV Core-core repulsion = 19413.093594 eV Total energy + Delta-G solvation = -3074.508212 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.56846 -37.61815 -36.10352 -33.76023 -32.09615 -31.10810 -30.44650 -28.16048 -26.07321 -25.52875 -25.17763 -24.20216 -22.79038 -22.52739 -20.97522 -19.95147 -18.32752 -16.99883 -15.89572 -15.68583 -15.46673 -15.16028 -14.86555 -14.51246 -14.18642 -13.87326 -13.58552 -13.33735 -13.15360 -12.91662 -12.58050 -12.29145 -12.11265 -12.01920 -11.74868 -11.51457 -11.31028 -11.22947 -11.04143 -10.95646 -10.70299 -10.66055 -10.51001 -10.47658 -10.37953 -10.12582 -10.02338 -9.34588 -9.14816 -9.04055 -8.84532 -8.59596 -8.26087 -7.62208 -5.88492 -3.98730 1.14058 1.17300 3.34221 3.38882 3.41631 3.55885 4.43855 4.51126 4.61126 4.75208 4.84707 4.91323 4.93064 5.05796 5.21173 5.29025 5.36669 5.37535 5.43122 5.56269 5.64656 5.75908 5.79870 5.86955 5.89608 5.99451 6.08181 6.14368 6.22686 6.25065 6.28430 6.39175 6.44908 6.46232 6.52571 6.64182 6.75827 6.79529 6.93043 7.11530 7.20505 7.41979 7.51208 7.78411 7.79329 7.87434 8.04345 8.24904 8.38109 8.59253 9.02566 9.65917 11.11935 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.038452 B = 0.002291 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.008540 B =12218.475621 C =12404.037621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.088 4.088 3 H 0.066 0.934 4 C -0.106 4.106 5 C -0.083 4.083 6 C -0.076 4.076 7 C -0.119 4.119 8 C -0.119 4.119 9 C -0.130 4.130 10 C -0.119 4.119 11 C -0.119 4.119 12 C 0.063 3.937 13 N -0.685 5.685 14 C 0.076 3.924 15 C 0.068 3.932 16 C -0.118 4.118 17 C -0.132 4.132 18 C -0.506 4.506 19 H 0.050 0.950 20 C 0.064 3.936 21 N -0.885 5.885 22 Si 0.889 3.111 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.279 1.279 26 H 0.048 0.952 27 H 0.044 0.956 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.018 0.982 39 H 0.064 0.936 40 H 0.335 0.665 41 H 0.011 0.989 42 H 0.054 0.946 43 H 0.020 0.980 44 H 0.073 0.927 45 H 0.017 0.983 46 H 0.018 0.982 47 H 0.083 0.917 48 H 0.011 0.989 49 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.391 -2.660 24.095 24.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.107 4.107 3 H 0.085 0.915 4 C -0.144 4.144 5 C -0.120 4.120 6 C -0.076 4.076 7 C -0.137 4.137 8 C -0.137 4.137 9 C -0.148 4.148 10 C -0.137 4.137 11 C -0.137 4.137 12 C -0.067 4.067 13 N -0.316 5.316 14 C -0.053 4.053 15 C 0.068 3.932 16 C -0.176 4.176 17 C -0.189 4.189 18 C -0.545 4.545 19 H 0.069 0.931 20 C -0.136 4.136 21 N -0.524 5.524 22 Si 0.717 3.283 23 H -0.204 1.204 24 H -0.214 1.214 25 H -0.205 1.205 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.036 0.964 39 H 0.083 0.917 40 H 0.154 0.846 41 H 0.029 0.971 42 H 0.073 0.927 43 H 0.039 0.961 44 H 0.092 0.908 45 H 0.036 0.964 46 H 0.037 0.963 47 H 0.101 0.899 48 H 0.030 0.970 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.691 -2.815 23.903 24.079 hybrid contribution 1.433 -0.416 -0.808 1.697 sum 2.125 -3.231 23.096 23.417 Atomic orbital electron populations 1.21758 0.94578 1.01565 1.01647 1.21145 0.96838 0.99301 0.93381 0.91545 1.21587 1.00793 0.99140 0.92918 1.20710 1.01493 0.98501 0.91319 1.20022 0.94317 0.96707 0.96524 1.21095 0.99928 0.96664 0.95970 1.21153 0.96204 0.99748 0.96636 1.21125 0.94850 0.98589 1.00259 1.21148 0.99700 0.96812 0.96082 1.21097 0.95760 1.00318 0.96554 1.21964 0.96602 0.97922 0.90237 1.60589 1.64120 1.05561 1.01348 1.22131 0.95407 0.98083 0.89649 1.18091 0.93283 0.91644 0.90220 1.21629 0.97133 0.98917 0.99894 1.21829 0.97440 0.99761 0.99920 1.21078 1.34695 1.08031 0.90671 0.93129 1.24891 0.95119 0.94948 0.98685 1.69826 1.39978 1.18570 1.24011 0.86721 0.79090 0.79576 0.82919 1.20418 1.21379 1.20512 0.93287 0.93716 0.91089 0.92136 0.91841 0.91047 0.90558 0.86079 0.86238 0.86364 0.86254 0.86128 0.96370 0.91705 0.84602 0.97098 0.92725 0.96096 0.90814 0.96383 0.96303 0.89865 0.97034 0.93169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 8.84 37.16 0.33 -1.33 16 2 C -0.09 -1.05 2.53 -90.62 -0.23 -1.28 16 3 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 4 C -0.11 -1.09 4.66 -26.73 -0.12 -1.22 16 5 C -0.08 -0.76 5.10 -27.88 -0.14 -0.90 16 6 C -0.08 -0.72 5.13 -104.62 -0.54 -1.26 16 7 C -0.12 -1.08 9.70 -39.58 -0.38 -1.47 16 8 C -0.12 -1.01 10.05 -39.58 -0.40 -1.40 16 9 C -0.13 -1.07 10.05 -39.58 -0.40 -1.47 16 10 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 11 C -0.12 -1.10 9.70 -39.58 -0.38 -1.48 16 12 C 0.06 0.92 5.07 -3.83 -0.02 0.90 16 13 N -0.68 -12.18 5.17 -113.78 -0.59 -12.77 16 14 C 0.08 1.61 4.58 -3.83 -0.02 1.59 16 15 C 0.07 1.66 0.57 -155.66 -0.09 1.58 16 16 C -0.12 -2.90 8.09 37.16 0.30 -2.60 16 17 C -0.13 -3.13 7.92 37.16 0.29 -2.84 16 18 C -0.51 -13.77 8.01 -34.44 -0.28 -14.04 16 19 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 20 C 0.06 1.76 5.15 -17.82 -0.09 1.67 16 21 N -0.88 -24.67 9.35 55.43 0.52 -24.15 16 22 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.04 0.46 6.56 -51.93 -0.34 0.12 16 28 H 0.07 1.00 7.75 -51.93 -0.40 0.60 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 32 H 0.08 0.67 6.51 -51.93 -0.34 0.33 16 33 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 34 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 35 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 36 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 38 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.34 5.92 6.77 -39.29 -0.27 5.65 16 41 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 42 H 0.05 1.19 8.14 -51.92 -0.42 0.77 16 43 H 0.02 0.46 7.60 -51.93 -0.39 0.07 16 44 H 0.07 1.98 6.07 -51.93 -0.32 1.67 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.08 2.19 6.07 -51.93 -0.32 1.88 16 48 H 0.01 0.23 6.57 -51.93 -0.34 -0.11 16 49 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 380.35 15.07 5.73 5.73 Total: -1.00 -27.83 380.35 -10.94 -38.77 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -9.02 Total: 3.10 kcal Atomic # 6 Polarization: -24.39 SS G_CDS: -2.56 Total: -26.95 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: -0.07 Total: -36.92 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -27.83 -10.94 -38.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459729759.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.160 kcal (2) G-P(sol) polarization free energy of solvation -27.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds