Wall clock time and date at job start Tue Mar 31 2020 06:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47009 * 2 1 4 4 C 1.52999 * 109.46912 * 240.00508 * 2 1 3 5 5 C 1.52999 * 109.47276 * 64.99886 * 4 2 1 6 6 C 1.50707 * 109.47348 * 180.02562 * 5 4 2 7 7 C 1.38234 * 119.99616 * 269.72932 * 6 5 4 8 8 C 1.38232 * 119.99659 * 179.76739 * 7 6 5 9 9 C 1.38236 * 120.00263 * 0.50170 * 8 7 6 10 10 C 1.38242 * 119.99601 * 359.74897 * 9 8 7 11 11 C 1.38229 * 120.00095 * 0.02562 * 10 9 8 12 12 C 1.52996 * 109.47098 * 120.00405 * 2 1 3 13 13 N 1.46897 * 109.47094 * 295.00064 * 12 2 1 14 14 C 1.46910 * 110.99882 * 180.02562 * 13 12 2 15 15 C 1.52996 * 109.47001 * 179.97438 * 14 13 12 16 16 C 1.52997 * 109.47439 * 300.00208 * 15 14 13 17 17 C 1.53002 * 109.46834 * 60.00134 * 15 14 13 18 18 C 1.50693 * 109.46976 * 179.97438 * 15 14 13 19 19 H 1.08002 * 120.00539 * 1.24695 * 18 15 14 20 20 C 1.37881 * 119.99937 * 181.24758 * 18 15 14 21 21 N 1.31519 * 119.99820 * 194.11755 * 20 18 15 22 22 Si 1.86799 * 120.00162 * 14.11198 * 20 18 15 23 23 H 1.48502 * 109.47071 * 84.53574 * 22 20 18 24 24 H 1.48497 * 109.47022 * 204.53715 * 22 20 18 25 25 H 1.48499 * 109.46807 * 324.53642 * 22 20 18 26 26 H 1.08999 * 109.46656 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46854 * 299.99348 * 1 2 3 28 28 H 1.08996 * 109.47178 * 59.99301 * 1 2 3 29 29 H 1.09000 * 109.47037 * 185.00137 * 4 2 1 30 30 H 1.09005 * 109.47492 * 304.99759 * 4 2 1 31 31 H 1.09000 * 109.47292 * 300.00095 * 5 4 2 32 32 H 1.09005 * 109.47141 * 60.00074 * 5 4 2 33 33 H 1.07999 * 120.00505 * 359.97438 * 7 6 5 34 34 H 1.08000 * 120.00141 * 180.23354 * 8 7 6 35 35 H 1.07997 * 120.00392 * 179.73213 * 9 8 7 36 36 H 1.08001 * 119.99679 * 179.97438 * 10 9 8 37 37 H 1.07999 * 120.00352 * 179.97438 * 11 10 9 38 38 H 1.09004 * 109.46760 * 174.99788 * 12 2 1 39 39 H 1.09002 * 109.47358 * 55.00329 * 12 2 1 40 40 H 1.00901 * 110.99741 * 303.94796 * 13 12 2 41 41 H 1.08994 * 109.46872 * 299.99919 * 14 13 12 42 42 H 1.09000 * 109.46457 * 60.00065 * 14 13 12 43 43 H 1.09004 * 109.47364 * 69.51845 * 16 15 14 44 44 H 1.09007 * 109.46878 * 189.51312 * 16 15 14 45 45 H 1.09000 * 109.47138 * 309.51495 * 16 15 14 46 46 H 1.09004 * 109.47496 * 59.99798 * 17 15 14 47 47 H 1.09004 * 109.47266 * 179.97438 * 17 15 14 48 48 H 1.08996 * 109.47282 * 299.99618 * 17 15 14 49 49 H 0.96998 * 119.99770 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6352 0.0691 -2.4953 6 6 2.1370 -0.6416 -3.7260 7 6 3.3880 -0.3448 -4.2336 8 6 3.8502 -1.0000 -5.3596 9 6 3.0572 -1.9446 -5.9840 10 6 1.8040 -2.2376 -5.4792 11 6 1.3437 -1.5857 -4.3506 12 6 2.0400 -0.7213 1.2492 13 7 1.6514 0.0372 2.4456 14 6 2.1258 -0.6268 3.6671 15 6 1.7035 0.1911 4.8891 16 6 2.3126 1.5918 4.8007 17 6 0.1778 0.3000 4.9275 18 6 2.1896 -0.4904 6.1422 19 1 2.7616 -1.4038 6.0729 20 6 1.9041 0.0523 7.3771 21 7 2.5464 -0.3689 8.4448 22 14 0.6052 1.3856 7.5339 23 1 -0.7364 0.7589 7.6465 24 1 0.8749 2.1992 8.7465 25 1 0.6446 2.2585 6.3332 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 3.1263 -0.7994 -1.2057 30 1 1.6054 -1.7197 -1.2953 31 1 0.5489 0.1474 -2.5390 32 1 2.0699 1.0677 -2.4494 33 1 4.0057 0.3966 -3.7486 34 1 4.8291 -0.7709 -5.7540 35 1 3.4165 -2.4535 -6.8662 36 1 1.1843 -2.9753 -5.9673 37 1 0.3645 -1.8143 -3.9565 38 1 3.1264 -0.7995 1.2054 39 1 1.6055 -1.7199 1.2950 40 1 1.9883 0.9871 2.3967 41 1 1.6922 -1.6248 3.7299 42 1 3.2128 -0.7039 3.6399 43 1 1.8349 2.1454 3.9923 44 1 2.1551 2.1167 5.7430 45 1 3.3817 1.5114 4.6038 46 1 -0.2562 -0.6980 4.9905 47 1 -0.1232 0.8823 5.7983 48 1 -0.1742 0.7927 4.0212 49 1 2.3458 0.0131 9.3135 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459729768.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:25 Heat of formation + Delta-G solvation = 10.883698 kcal Electronic energy + Delta-G solvation = -22577.620002 eV Core-core repulsion = 19503.913662 eV Total energy + Delta-G solvation = -3073.706340 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.60459 -37.81002 -36.38626 -33.84878 -32.14469 -31.14100 -31.08662 -28.28034 -26.35922 -26.16425 -25.09898 -24.38238 -22.82204 -22.66270 -21.02168 -20.07283 -18.60584 -17.03003 -16.02595 -15.73567 -15.57023 -15.40622 -15.19317 -14.63373 -14.41337 -13.87804 -13.61500 -13.35077 -13.19951 -13.04586 -12.78424 -12.66536 -12.44915 -12.19243 -11.90541 -11.85811 -11.80165 -11.60514 -11.36945 -11.27736 -10.89052 -10.68657 -10.57335 -10.50214 -10.25601 -10.01863 -9.91080 -9.81869 -9.17869 -8.94848 -8.88928 -8.51814 -8.33764 -7.80944 -6.05816 -4.01166 1.10852 1.14352 3.34678 3.43767 3.47370 3.52715 4.41801 4.46446 4.57450 4.69898 4.77818 4.86385 4.87558 4.96573 5.15231 5.24363 5.27388 5.30862 5.37231 5.49368 5.57565 5.69553 5.74100 5.81374 5.82710 5.90701 6.00887 6.02194 6.08468 6.14894 6.19614 6.22020 6.25642 6.33883 6.39975 6.43733 6.53441 6.56609 6.66700 6.70661 6.76339 6.87849 6.95794 7.05272 7.39565 7.57476 7.62116 7.85716 7.99388 8.57930 8.99128 9.60509 11.07601 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.041055 B = 0.002391 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.850710 B =11707.025180 C =11900.304892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.088 4.088 3 H 0.066 0.934 4 C -0.107 4.107 5 C -0.083 4.083 6 C -0.076 4.076 7 C -0.119 4.119 8 C -0.119 4.119 9 C -0.130 4.130 10 C -0.119 4.119 11 C -0.119 4.119 12 C 0.063 3.937 13 N -0.689 5.689 14 C 0.085 3.915 15 C 0.040 3.960 16 C -0.143 4.143 17 C -0.134 4.134 18 C -0.511 4.511 19 H 0.070 0.930 20 C 0.071 3.929 21 N -0.898 5.898 22 Si 0.889 3.111 23 H -0.288 1.288 24 H -0.309 1.309 25 H -0.248 1.248 26 H 0.049 0.951 27 H 0.069 0.931 28 H 0.044 0.956 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.021 0.979 39 H 0.067 0.933 40 H 0.335 0.665 41 H 0.062 0.938 42 H 0.020 0.980 43 H 0.027 0.973 44 H 0.053 0.947 45 H 0.038 0.962 46 H 0.044 0.956 47 H 0.029 0.971 48 H 0.043 0.957 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.255 0.374 -27.334 27.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.107 4.107 3 H 0.085 0.915 4 C -0.145 4.145 5 C -0.120 4.120 6 C -0.076 4.076 7 C -0.137 4.137 8 C -0.137 4.137 9 C -0.148 4.148 10 C -0.137 4.137 11 C -0.137 4.137 12 C -0.067 4.067 13 N -0.320 5.320 14 C -0.043 4.043 15 C 0.039 3.961 16 C -0.200 4.200 17 C -0.191 4.191 18 C -0.549 4.549 19 H 0.088 0.912 20 C -0.130 4.130 21 N -0.535 5.535 22 Si 0.722 3.278 23 H -0.215 1.215 24 H -0.238 1.238 25 H -0.174 1.174 26 H 0.068 0.932 27 H 0.088 0.912 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.040 0.960 39 H 0.085 0.915 40 H 0.153 0.847 41 H 0.081 0.919 42 H 0.038 0.962 43 H 0.046 0.954 44 H 0.072 0.928 45 H 0.057 0.943 46 H 0.063 0.937 47 H 0.047 0.953 48 H 0.062 0.938 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.846 0.088 -27.095 27.158 hybrid contribution 0.341 0.708 0.232 0.819 sum -1.504 0.796 -26.864 26.917 Atomic orbital electron populations 1.21762 0.94604 1.01626 1.01592 1.21148 0.96801 0.99315 0.93428 0.91533 1.21588 1.00866 0.99162 0.92855 1.20705 1.01463 0.98482 0.91340 1.20012 0.94370 0.96723 0.96537 1.21093 0.95758 1.00290 0.96581 1.21153 0.99697 0.96768 0.96106 1.21134 0.94814 0.98576 1.00250 1.21154 0.96221 0.99758 0.96594 1.21088 0.99930 0.96673 0.95965 1.21966 0.96881 0.97939 0.89930 1.60601 1.64191 1.05608 1.01582 1.21935 0.96195 0.97875 0.88340 1.18468 0.92025 0.92195 0.93450 1.22288 0.99230 0.98596 0.99930 1.22152 0.98404 1.00037 0.98465 1.20872 1.34747 1.10723 0.88579 0.91164 1.25001 0.95842 0.96369 0.95827 1.69972 1.40072 1.44099 0.99367 0.87236 0.81994 0.82657 0.75881 1.21542 1.23829 1.17417 0.93202 0.91236 0.93660 0.92059 0.91780 0.90595 0.91064 0.86131 0.86232 0.86339 0.86224 0.86090 0.96043 0.91466 0.84733 0.91949 0.96153 0.95406 0.92844 0.94272 0.93699 0.95264 0.93784 0.92789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 8.84 37.16 0.33 -1.19 16 2 C -0.09 -0.96 2.53 -90.62 -0.23 -1.19 16 3 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 4 C -0.11 -1.02 4.66 -26.73 -0.12 -1.14 16 5 C -0.08 -0.70 5.10 -27.88 -0.14 -0.85 16 6 C -0.08 -0.70 5.13 -104.62 -0.54 -1.23 16 7 C -0.12 -1.05 9.70 -39.58 -0.38 -1.43 16 8 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 9 C -0.13 -1.03 10.05 -39.58 -0.40 -1.43 16 10 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 11 C -0.12 -1.04 9.70 -39.59 -0.38 -1.42 16 12 C 0.06 0.85 5.07 -3.83 -0.02 0.83 16 13 N -0.69 -11.12 5.17 -113.78 -0.59 -11.71 16 14 C 0.08 1.68 4.57 -3.82 -0.02 1.66 16 15 C 0.04 0.91 0.57 -155.67 -0.09 0.82 16 16 C -0.14 -3.06 7.24 37.16 0.27 -2.80 16 17 C -0.13 -2.95 7.54 37.16 0.28 -2.67 16 18 C -0.51 -14.20 8.62 -34.44 -0.30 -14.49 16 19 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 20 C 0.07 2.05 5.32 -17.82 -0.09 1.96 16 21 N -0.90 -27.60 13.96 55.43 0.77 -26.82 16 22 Si 0.89 22.26 22.79 -169.99 -3.87 18.38 16 23 H -0.29 -7.20 7.10 56.52 0.40 -6.80 16 24 H -0.31 -7.86 7.11 56.52 0.40 -7.46 16 25 H -0.25 -5.75 4.65 56.52 0.26 -5.49 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.88 7.75 -51.93 -0.40 0.48 16 28 H 0.04 0.43 6.56 -51.93 -0.34 0.08 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.62 6.51 -51.93 -0.34 0.28 16 32 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 33 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 34 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 35 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 36 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 37 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.33 5.25 7.00 -39.29 -0.27 4.97 16 41 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.03 0.51 7.06 -51.93 -0.37 0.15 16 44 H 0.05 1.23 4.30 -51.93 -0.22 1.00 16 45 H 0.04 0.81 8.12 -51.93 -0.42 0.39 16 46 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 47 H 0.03 0.68 2.26 -51.93 -0.12 0.56 16 48 H 0.04 0.87 7.60 -51.93 -0.39 0.48 16 49 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 370.62 15.07 5.59 5.59 Total: -1.00 -29.93 370.62 -9.65 -39.58 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -8.91 Total: 2.30 kcal Atomic # 6 Polarization: -24.68 SS G_CDS: -2.63 Total: -27.31 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: 0.18 Total: -38.54 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -3.87 Total: 18.38 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.93 -9.65 -39.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459729768.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.461 kcal (2) G-P(sol) polarization free energy of solvation -29.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds