Wall clock time and date at job start Tue Mar 31 2020 06:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47009 * 2 1 4 4 C 1.52999 * 109.46912 * 240.00508 * 2 1 3 5 5 C 1.52999 * 109.47276 * 64.99886 * 4 2 1 6 6 C 1.50707 * 109.47348 * 180.02562 * 5 4 2 7 7 C 1.38234 * 119.99616 * 269.72932 * 6 5 4 8 8 C 1.38232 * 119.99659 * 179.76739 * 7 6 5 9 9 C 1.38236 * 120.00263 * 0.50170 * 8 7 6 10 10 C 1.38242 * 119.99601 * 359.74897 * 9 8 7 11 11 C 1.38229 * 120.00095 * 0.02562 * 10 9 8 12 12 C 1.52996 * 109.47098 * 120.00405 * 2 1 3 13 13 N 1.46897 * 109.47094 * 295.00064 * 12 2 1 14 14 C 1.46910 * 110.99882 * 180.02562 * 13 12 2 15 15 C 1.52996 * 109.47001 * 179.97438 * 14 13 12 16 16 C 1.52997 * 109.47439 * 300.00208 * 15 14 13 17 17 C 1.53002 * 109.46834 * 60.00134 * 15 14 13 18 18 C 1.50693 * 109.46976 * 179.97438 * 15 14 13 19 19 H 1.08002 * 120.00539 * 1.24695 * 18 15 14 20 20 C 1.37881 * 119.99937 * 181.24758 * 18 15 14 21 21 N 1.31519 * 119.99820 * 194.11755 * 20 18 15 22 22 Si 1.86799 * 120.00162 * 14.11198 * 20 18 15 23 23 H 1.48502 * 109.47071 * 84.53574 * 22 20 18 24 24 H 1.48497 * 109.47022 * 204.53715 * 22 20 18 25 25 H 1.48499 * 109.46807 * 324.53642 * 22 20 18 26 26 H 1.08999 * 109.46656 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46854 * 299.99348 * 1 2 3 28 28 H 1.08996 * 109.47178 * 59.99301 * 1 2 3 29 29 H 1.09000 * 109.47037 * 185.00137 * 4 2 1 30 30 H 1.09005 * 109.47492 * 304.99759 * 4 2 1 31 31 H 1.09000 * 109.47292 * 300.00095 * 5 4 2 32 32 H 1.09005 * 109.47141 * 60.00074 * 5 4 2 33 33 H 1.07999 * 120.00505 * 359.97438 * 7 6 5 34 34 H 1.08000 * 120.00141 * 180.23354 * 8 7 6 35 35 H 1.07997 * 120.00392 * 179.73213 * 9 8 7 36 36 H 1.08001 * 119.99679 * 179.97438 * 10 9 8 37 37 H 1.07999 * 120.00352 * 179.97438 * 11 10 9 38 38 H 1.09004 * 109.46760 * 174.99788 * 12 2 1 39 39 H 1.09002 * 109.47358 * 55.00329 * 12 2 1 40 40 H 1.00901 * 110.99741 * 303.94796 * 13 12 2 41 41 H 1.08994 * 109.46872 * 299.99919 * 14 13 12 42 42 H 1.09000 * 109.46457 * 60.00065 * 14 13 12 43 43 H 1.09004 * 109.47364 * 69.51845 * 16 15 14 44 44 H 1.09007 * 109.46878 * 189.51312 * 16 15 14 45 45 H 1.09000 * 109.47138 * 309.51495 * 16 15 14 46 46 H 1.09004 * 109.47496 * 59.99798 * 17 15 14 47 47 H 1.09004 * 109.47266 * 179.97438 * 17 15 14 48 48 H 1.08996 * 109.47282 * 299.99618 * 17 15 14 49 49 H 0.96998 * 119.99770 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6352 0.0691 -2.4953 6 6 2.1370 -0.6416 -3.7260 7 6 3.3880 -0.3448 -4.2336 8 6 3.8502 -1.0000 -5.3596 9 6 3.0572 -1.9446 -5.9840 10 6 1.8040 -2.2376 -5.4792 11 6 1.3437 -1.5857 -4.3506 12 6 2.0400 -0.7213 1.2492 13 7 1.6514 0.0372 2.4456 14 6 2.1258 -0.6268 3.6671 15 6 1.7035 0.1911 4.8891 16 6 2.3126 1.5918 4.8007 17 6 0.1778 0.3000 4.9275 18 6 2.1896 -0.4904 6.1422 19 1 2.7616 -1.4038 6.0729 20 6 1.9041 0.0523 7.3771 21 7 2.5464 -0.3689 8.4448 22 14 0.6052 1.3856 7.5339 23 1 -0.7364 0.7589 7.6465 24 1 0.8749 2.1992 8.7465 25 1 0.6446 2.2585 6.3332 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 3.1263 -0.7994 -1.2057 30 1 1.6054 -1.7197 -1.2953 31 1 0.5489 0.1474 -2.5390 32 1 2.0699 1.0677 -2.4494 33 1 4.0057 0.3966 -3.7486 34 1 4.8291 -0.7709 -5.7540 35 1 3.4165 -2.4535 -6.8662 36 1 1.1843 -2.9753 -5.9673 37 1 0.3645 -1.8143 -3.9565 38 1 3.1264 -0.7995 1.2054 39 1 1.6055 -1.7199 1.2950 40 1 1.9883 0.9871 2.3967 41 1 1.6922 -1.6248 3.7299 42 1 3.2128 -0.7039 3.6399 43 1 1.8349 2.1454 3.9923 44 1 2.1551 2.1167 5.7430 45 1 3.3817 1.5114 4.6038 46 1 -0.2562 -0.6980 4.9905 47 1 -0.1232 0.8823 5.7983 48 1 -0.1742 0.7927 4.0212 49 1 2.3458 0.0131 9.3135 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459729768.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:25 Heat of formation + Delta-G solvation = -4.991383 kcal Electronic energy + Delta-G solvation = -22578.308398 eV Core-core repulsion = 19503.913662 eV Total energy + Delta-G solvation = -3074.394736 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.22115 -39.17334 -37.64836 -35.11198 -33.74532 -32.45852 -31.72504 -29.06090 -27.91854 -27.51389 -27.04683 -25.64829 -23.80178 -23.41465 -21.72367 -21.08757 -20.33261 -18.06927 -17.63021 -17.30783 -16.64451 -16.28708 -16.15065 -15.68850 -15.49545 -14.97594 -14.84307 -14.60829 -14.34868 -14.27783 -14.12669 -13.81323 -13.71409 -13.67636 -13.30211 -13.05139 -12.92853 -12.62269 -12.32535 -12.23501 -12.11199 -11.93833 -11.89507 -11.80679 -11.60844 -11.45384 -11.34995 -11.30486 -10.91271 -10.56308 -10.28778 -9.78441 -9.52659 -9.18016 -8.28894 -6.27726 0.49654 0.53720 1.37229 1.39023 1.50738 2.36364 2.91044 3.08102 3.37365 3.90008 3.95925 3.99955 4.13463 4.20330 4.27392 4.31756 4.39487 4.43668 4.46717 4.59358 4.66707 4.69671 4.73095 4.78327 4.85107 4.87537 4.90253 4.93410 4.98227 5.01955 5.10534 5.16235 5.20127 5.22687 5.24442 5.26273 5.29928 5.34544 5.54551 5.61006 5.61759 5.65391 5.66685 5.77140 5.80644 5.88023 6.17957 6.22735 6.36197 6.63554 6.80068 7.37312 8.88348 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.041055 B = 0.002391 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.850710 B =11707.025180 C =11900.304892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.078 4.078 3 H 0.073 0.927 4 C -0.099 4.099 5 C -0.076 4.076 6 C -0.090 4.090 7 C -0.133 4.133 8 C -0.129 4.129 9 C -0.138 4.138 10 C -0.129 4.129 11 C -0.132 4.132 12 C 0.062 3.938 13 N -0.681 5.681 14 C 0.098 3.902 15 C 0.034 3.966 16 C -0.140 4.140 17 C -0.129 4.129 18 C -0.512 4.512 19 H 0.026 0.974 20 C 0.013 3.987 21 N -0.949 5.949 22 Si 0.946 3.054 23 H -0.286 1.286 24 H -0.316 1.316 25 H -0.211 1.211 26 H 0.045 0.955 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.128 0.872 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.129 0.871 38 H 0.020 0.980 39 H 0.060 0.940 40 H 0.342 0.658 41 H 0.049 0.951 42 H 0.008 0.992 43 H 0.063 0.937 44 H 0.038 0.962 45 H 0.038 0.962 46 H 0.036 0.964 47 H 0.021 0.979 48 H 0.072 0.928 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.401 1.970 -30.038 30.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.097 4.097 3 H 0.092 0.908 4 C -0.137 4.137 5 C -0.113 4.113 6 C -0.090 4.090 7 C -0.151 4.151 8 C -0.147 4.147 9 C -0.156 4.156 10 C -0.147 4.147 11 C -0.150 4.150 12 C -0.067 4.067 13 N -0.312 5.312 14 C -0.031 4.031 15 C 0.033 3.967 16 C -0.197 4.197 17 C -0.186 4.186 18 C -0.551 4.551 19 H 0.045 0.955 20 C -0.184 4.184 21 N -0.589 5.589 22 Si 0.777 3.223 23 H -0.214 1.214 24 H -0.246 1.246 25 H -0.135 1.135 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.146 0.854 34 H 0.153 0.847 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.147 0.853 38 H 0.039 0.961 39 H 0.079 0.921 40 H 0.160 0.840 41 H 0.067 0.933 42 H 0.026 0.974 43 H 0.082 0.918 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.055 0.945 47 H 0.040 0.960 48 H 0.091 0.909 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.995 1.689 -29.844 30.041 hybrid contribution 0.786 0.079 1.002 1.276 sum -2.209 1.769 -28.842 28.980 Atomic orbital electron populations 1.21727 0.94354 1.01441 1.01739 1.21062 0.96841 0.99373 0.92433 0.90826 1.21487 1.00489 0.98964 0.92748 1.20636 1.01760 0.98402 0.90486 1.20141 0.94713 0.97183 0.96957 1.21311 0.95980 1.00784 0.97063 1.21439 1.00544 0.96715 0.96021 1.21447 0.94792 0.98520 1.00835 1.21445 0.96651 1.00022 0.96551 1.21309 1.00453 0.96854 0.96382 1.22035 0.96925 0.97763 0.89961 1.60523 1.63855 1.05913 1.00950 1.21603 0.95272 0.97078 0.89157 1.18479 0.92934 0.93122 0.92179 1.22194 0.99611 0.97450 1.00463 1.22082 0.97196 0.99907 0.99429 1.21223 1.33488 1.09324 0.91047 0.95533 1.25848 0.97872 0.99212 0.95424 1.70120 1.42275 1.46446 1.00058 0.86303 0.78782 0.80399 0.76857 1.21371 1.24630 1.13471 0.93591 0.92714 0.91846 0.92466 0.92217 0.90066 0.90526 0.85380 0.84655 0.84514 0.84582 0.85267 0.96131 0.92127 0.83956 0.93288 0.97427 0.91785 0.94291 0.94271 0.94466 0.96041 0.90871 0.92873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 8.84 71.98 0.64 -1.97 16 2 C -0.08 -1.51 2.53 -10.79 -0.03 -1.54 16 3 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 4 C -0.10 -1.69 4.66 30.59 0.14 -1.54 16 5 C -0.08 -1.12 5.10 29.85 0.15 -0.97 16 6 C -0.09 -1.50 5.13 -19.86 -0.10 -1.60 16 7 C -0.13 -2.16 9.70 22.27 0.22 -1.94 16 8 C -0.13 -1.91 10.05 22.27 0.22 -1.69 16 9 C -0.14 -1.95 10.05 22.27 0.22 -1.73 16 10 C -0.13 -1.89 10.05 22.27 0.22 -1.66 16 11 C -0.13 -2.11 9.70 22.27 0.22 -1.90 16 12 C 0.06 1.58 5.07 86.30 0.44 2.02 16 13 N -0.68 -20.45 5.17 -513.88 -2.66 -23.11 16 14 C 0.10 3.82 4.57 86.30 0.39 4.21 16 15 C 0.03 1.51 0.57 -52.93 -0.03 1.48 16 16 C -0.14 -5.62 7.24 71.98 0.52 -5.10 16 17 C -0.13 -5.38 7.54 71.98 0.54 -4.84 16 18 C -0.51 -29.07 8.62 25.60 0.22 -28.85 16 19 H 0.03 1.68 7.99 -2.91 -0.02 1.66 16 20 C 0.01 0.77 5.32 84.66 0.45 1.22 16 21 N -0.95 -60.28 13.96 21.45 0.30 -59.98 16 22 Si 0.95 45.47 22.79 68.60 1.56 47.03 16 23 H -0.29 -13.59 7.10 99.48 0.71 -12.88 16 24 H -0.32 -15.50 7.11 99.48 0.71 -14.80 16 25 H -0.21 -8.86 4.65 99.48 0.46 -8.39 16 26 H 0.04 0.91 8.14 -2.39 -0.02 0.90 16 27 H 0.05 1.23 7.75 -2.39 -0.02 1.21 16 28 H 0.06 0.99 6.56 -2.39 -0.02 0.98 16 29 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.08 1.11 6.51 -2.39 -0.02 1.10 16 32 H 0.08 1.05 8.08 -2.38 -0.02 1.04 16 33 H 0.13 1.76 8.06 -2.91 -0.02 1.74 16 34 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 35 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 36 H 0.14 1.43 8.06 -2.91 -0.02 1.40 16 37 H 0.13 1.74 8.06 -2.91 -0.02 1.72 16 38 H 0.02 0.53 8.14 -2.38 -0.02 0.51 16 39 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.34 9.57 7.00 -89.69 -0.63 8.94 16 41 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 43 H 0.06 2.11 7.06 -2.38 -0.02 2.09 16 44 H 0.04 1.67 4.30 -2.38 -0.01 1.66 16 45 H 0.04 1.54 8.12 -2.39 -0.02 1.52 16 46 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 47 H 0.02 0.92 2.26 -2.39 -0.01 0.92 16 48 H 0.07 2.61 7.60 -2.39 -0.02 2.59 16 49 H 0.26 15.75 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -65.67 370.62 3.67 -62.00 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: 0.02 Total: 20.45 kcal Atomic # 6 Polarization: -50.84 SS G_CDS: 4.44 Total: -46.40 kcal Atomic # 7 Polarization: -80.73 SS G_CDS: -2.36 Total: -83.09 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.56 Total: 47.03 kcal Total: -65.67 3.67 -62.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459729768.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.006 kcal (2) G-P(sol) polarization free energy of solvation -65.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds