Wall clock time and date at job start Tue Mar 31 2020 06:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47236 * 2 1 4 4 C 1.52997 * 109.47236 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47153 * 304.99767 * 4 3 2 6 6 C 1.53002 * 109.46817 * 184.99998 * 4 3 2 7 7 N 1.46896 * 109.47181 * 65.00049 * 6 4 3 8 8 C 1.46904 * 111.00016 * 179.97438 * 7 6 4 9 9 C 1.53001 * 109.47256 * 179.97438 * 8 7 6 10 10 C 1.52998 * 109.47223 * 300.00243 * 9 8 7 11 11 C 1.53002 * 109.46762 * 60.00300 * 9 8 7 12 12 C 1.50699 * 109.47044 * 179.97438 * 9 8 7 13 13 H 1.07997 * 120.00171 * 0.02562 * 12 9 8 14 14 C 1.37876 * 119.99971 * 180.02562 * 12 9 8 15 15 N 1.31512 * 119.99917 * 0.02562 * 14 12 9 16 16 Si 1.86796 * 119.99986 * 180.02562 * 14 12 9 17 17 H 1.48503 * 109.47053 * 90.00004 * 16 14 12 18 18 H 1.48503 * 109.47028 * 210.00117 * 16 14 12 19 19 H 1.48502 * 109.47103 * 330.00376 * 16 14 12 20 20 C 1.50701 * 109.47212 * 64.99766 * 4 3 2 21 21 C 1.38236 * 119.99963 * 59.72884 * 20 4 3 22 22 C 1.38236 * 120.00036 * 179.81111 * 21 20 4 23 23 C 1.38226 * 119.99834 * 0.39071 * 22 21 20 24 24 C 1.38237 * 120.00085 * 359.86461 * 23 22 21 25 25 C 1.38229 * 120.00216 * 240.00128 * 20 4 3 26 26 H 1.08993 * 109.47322 * 300.00158 * 1 2 3 27 27 H 1.09004 * 109.46881 * 60.00519 * 1 2 3 28 28 H 1.09002 * 109.47196 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47630 * 239.99870 * 2 1 3 30 30 H 1.09004 * 109.47346 * 119.99740 * 2 1 3 31 31 H 1.09001 * 109.46917 * 59.99433 * 3 2 1 32 32 H 1.09004 * 109.46741 * 300.00111 * 3 2 1 33 33 H 1.09008 * 109.46873 * 184.99985 * 6 4 3 34 34 H 1.08997 * 109.47047 * 304.99674 * 6 4 3 35 35 H 1.00903 * 111.00011 * 303.95191 * 7 6 4 36 36 H 1.08998 * 109.47006 * 300.00352 * 8 7 6 37 37 H 1.09003 * 109.46947 * 60.00060 * 8 7 6 38 38 H 1.09008 * 109.46914 * 59.99776 * 10 9 8 39 39 H 1.08990 * 109.47272 * 179.97438 * 10 9 8 40 40 H 1.09002 * 109.46789 * 300.00081 * 10 9 8 41 41 H 1.08998 * 109.47080 * 59.99614 * 11 9 8 42 42 H 1.08998 * 109.46640 * 180.02562 * 11 9 8 43 43 H 1.09007 * 109.47127 * 299.99547 * 11 9 8 44 44 H 0.96998 * 120.00122 * 180.02562 * 15 14 12 45 45 H 1.08010 * 119.99941 * 359.97438 * 21 20 4 46 46 H 1.08001 * 119.99466 * 180.23187 * 22 21 20 47 47 H 1.08005 * 120.00406 * 179.83264 * 23 22 21 48 48 H 1.07998 * 120.00065 * 179.97438 * 24 23 22 49 49 H 1.08002 * 120.00084 * 359.97438 * 25 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8530 0.8410 6 6 4.0800 2.8796 0.1251 7 7 3.6919 3.4242 1.4330 8 6 4.1663 4.8057 1.5897 9 6 3.7434 5.3377 2.9605 10 6 2.2178 5.3067 3.0712 11 6 4.3523 4.4618 4.0574 12 6 4.2307 6.7546 3.1216 13 1 4.7860 7.2285 2.3257 14 6 3.9675 7.4461 4.2850 15 7 3.2917 6.8689 5.2544 16 14 4.5708 9.2027 4.4843 17 1 3.5343 10.1417 3.9851 18 1 4.8356 9.4752 5.9199 19 1 5.8222 9.3875 3.7064 20 6 4.0718 0.8422 -1.2886 21 6 3.7327 1.4190 -2.4983 22 6 4.1962 0.8706 -3.6795 23 6 4.9921 -0.2592 -3.6515 24 6 5.3269 -0.8391 -2.4421 25 6 4.8665 -0.2885 -1.2607 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 5.1663 2.8887 0.0355 34 1 3.6450 3.4900 -0.6663 35 1 2.6934 3.3671 1.5666 36 1 5.2532 4.8278 1.5104 37 1 3.7323 5.4297 0.8085 38 1 1.8658 4.2816 2.9549 39 1 1.9166 5.6853 4.0478 40 1 1.7841 5.9307 2.2897 41 1 5.4392 4.4839 3.9785 42 1 4.0506 4.8406 5.0340 43 1 4.0002 3.4367 3.9411 44 1 3.1062 7.3555 6.0728 45 1 3.1078 2.2997 -2.5203 46 1 3.9344 1.3235 -4.6244 47 1 5.3521 -0.6893 -4.5745 48 1 5.9484 -1.7220 -2.4202 49 1 5.1282 -0.7415 -0.3159 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459737164.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:03 Heat of formation + Delta-G solvation = -5.443372 kcal Electronic energy + Delta-G solvation = -23338.510247 eV Core-core repulsion = 20264.095911 eV Total energy + Delta-G solvation = -3074.414335 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.73697 -37.30291 -35.92672 -33.67662 -32.18067 -30.97384 -30.66238 -28.51729 -25.84630 -25.54233 -25.17428 -23.75394 -22.84263 -22.03929 -21.54118 -19.72028 -18.41653 -16.95519 -15.97141 -15.64295 -15.42920 -14.95295 -14.72558 -14.51677 -14.14050 -13.89333 -13.49823 -13.37577 -13.06944 -12.79759 -12.46819 -12.35485 -12.30536 -12.05881 -11.81232 -11.53027 -11.25703 -11.11590 -11.03020 -10.92674 -10.69380 -10.63697 -10.49600 -10.48046 -10.39813 -10.13665 -10.03101 -9.35648 -9.06926 -8.97710 -8.67938 -8.59399 -8.27065 -7.65810 -5.89310 -3.99553 1.31642 1.34459 3.32344 3.39381 3.42652 3.73371 4.44544 4.59232 4.69521 4.90632 4.92006 5.00144 5.04210 5.08915 5.20483 5.36134 5.40828 5.44235 5.45937 5.52570 5.62400 5.81707 5.84663 5.88254 5.97393 5.99038 6.04772 6.14599 6.19940 6.30734 6.34553 6.38644 6.44278 6.44910 6.47600 6.69680 6.74440 6.91736 6.95904 7.10199 7.19322 7.41095 7.50084 7.76594 7.78356 7.86028 8.02492 8.23908 8.37309 8.58464 9.01999 9.65351 11.11219 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.021362 B = 0.003312 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.408776 B = 8452.610551 C = 9157.818448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.113 4.113 4 C -0.049 4.049 5 H 0.087 0.913 6 C 0.068 3.932 7 N -0.686 5.686 8 C 0.076 3.924 9 C 0.069 3.931 10 C -0.132 4.132 11 C -0.119 4.119 12 C -0.506 4.506 13 H 0.051 0.949 14 C 0.065 3.935 15 N -0.885 5.885 16 Si 0.888 3.112 17 H -0.283 1.283 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.061 4.061 21 C -0.115 4.115 22 C -0.120 4.120 23 C -0.131 4.131 24 C -0.120 4.120 25 C -0.116 4.116 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.022 0.978 35 H 0.337 0.663 36 H 0.055 0.945 37 H 0.012 0.988 38 H 0.010 0.990 39 H 0.083 0.917 40 H 0.018 0.982 41 H 0.017 0.983 42 H 0.074 0.926 43 H 0.020 0.980 44 H 0.258 0.742 45 H 0.119 0.881 46 H 0.118 0.882 47 H 0.117 0.883 48 H 0.118 0.882 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.500 -15.152 -14.247 20.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.151 4.151 4 C -0.068 4.068 5 H 0.105 0.895 6 C -0.062 4.062 7 N -0.319 5.319 8 C -0.053 4.053 9 C 0.068 3.932 10 C -0.189 4.189 11 C -0.176 4.176 12 C -0.545 4.545 13 H 0.070 0.930 14 C -0.136 4.136 15 N -0.524 5.524 16 Si 0.716 3.284 17 H -0.209 1.209 18 H -0.213 1.213 19 H -0.201 1.201 20 C -0.062 4.062 21 C -0.133 4.133 22 C -0.138 4.138 23 C -0.149 4.149 24 C -0.139 4.139 25 C -0.135 4.135 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.040 0.960 35 H 0.157 0.843 36 H 0.074 0.926 37 H 0.030 0.970 38 H 0.029 0.971 39 H 0.102 0.898 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.092 0.908 43 H 0.039 0.961 44 H 0.068 0.932 45 H 0.137 0.863 46 H 0.136 0.864 47 H 0.135 0.865 48 H 0.136 0.864 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.028 -15.368 -13.724 20.630 hybrid contribution -0.204 1.529 -0.589 1.651 sum -1.232 -13.839 -14.312 19.947 Atomic orbital electron populations 1.21773 0.96159 1.01230 1.01807 1.21504 0.95511 0.96949 1.01881 1.21702 0.94087 0.96990 1.02274 1.20279 0.95341 0.96827 0.94354 0.89465 1.21921 1.00292 0.92867 0.91090 1.60626 1.19672 1.22919 1.28712 1.22141 0.98805 0.85151 0.99180 1.18087 0.92218 0.93831 0.89039 1.21830 0.98253 0.95983 1.02875 1.21634 0.97531 0.96244 1.02223 1.21123 1.34719 0.97590 1.01085 0.93039 1.24882 0.95125 0.97685 0.95889 1.69833 1.40137 1.36353 1.06060 0.86665 0.79125 0.85417 0.77163 1.20887 1.21302 1.20066 1.19900 0.96463 0.94931 0.94905 1.21037 1.00235 0.99990 0.92036 1.21115 0.98233 0.96437 0.98029 1.21087 0.99320 0.96723 0.97782 1.21114 1.00118 0.99987 0.92635 1.21107 0.98024 0.96092 0.98231 0.92565 0.93026 0.93120 0.92230 0.92024 0.91009 0.92212 0.91511 0.96008 0.84323 0.92640 0.97015 0.97111 0.89835 0.96281 0.96348 0.90774 0.96110 0.93217 0.86259 0.86417 0.86535 0.86380 0.86110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.91 37.16 0.37 -1.10 16 2 C -0.12 -1.26 5.75 -26.73 -0.15 -1.41 16 3 C -0.11 -1.31 4.46 -26.73 -0.12 -1.43 16 4 C -0.05 -0.61 2.25 -91.77 -0.21 -0.82 16 5 H 0.09 1.14 7.88 -51.93 -0.41 0.73 16 6 C 0.07 1.01 4.89 -3.83 -0.02 0.99 16 7 N -0.69 -12.20 5.71 -113.78 -0.65 -12.85 16 8 C 0.08 1.60 4.59 -3.82 -0.02 1.58 16 9 C 0.07 1.67 0.57 -155.66 -0.09 1.59 16 10 C -0.13 -3.11 7.92 37.16 0.29 -2.82 16 11 C -0.12 -2.91 8.09 37.16 0.30 -2.61 16 12 C -0.51 -13.76 8.01 -34.44 -0.28 -14.03 16 13 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 14 C 0.06 1.77 5.15 -17.82 -0.09 1.68 16 15 N -0.88 -24.62 9.35 55.43 0.52 -24.11 16 16 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 C -0.06 -0.71 3.76 -104.63 -0.39 -1.11 16 21 C -0.11 -1.29 8.71 -39.58 -0.34 -1.63 16 22 C -0.12 -1.21 10.05 -39.59 -0.40 -1.61 16 23 C -0.13 -1.26 10.05 -39.59 -0.40 -1.66 16 24 C -0.12 -1.19 10.05 -39.58 -0.40 -1.58 16 25 C -0.12 -1.27 9.67 -39.59 -0.38 -1.65 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.63 7.38 -51.93 -0.38 0.25 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.91 6.47 -51.93 -0.34 0.57 16 32 H 0.06 0.68 7.21 -51.93 -0.37 0.31 16 33 H 0.07 1.05 8.14 -51.92 -0.42 0.62 16 34 H 0.02 0.32 7.59 -51.93 -0.39 -0.07 16 35 H 0.34 5.87 4.93 -39.29 -0.19 5.67 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.01 0.21 6.57 -51.92 -0.34 -0.13 16 39 H 0.08 2.19 6.07 -51.93 -0.32 1.88 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.07 1.99 6.07 -51.93 -0.32 1.68 16 43 H 0.02 0.46 7.60 -51.92 -0.39 0.07 16 44 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 45 H 0.12 1.28 7.13 -52.48 -0.37 0.91 16 46 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 47 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 48 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 49 H 0.12 1.19 7.95 -52.49 -0.42 0.77 16 LS Contribution 376.12 15.07 5.67 5.67 Total: -1.00 -27.60 376.12 -10.67 -38.27 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -8.86 Total: 4.43 kcal Atomic # 6 Polarization: -25.31 SS G_CDS: -2.32 Total: -27.63 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: -0.13 Total: -36.96 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -27.60 -10.67 -38.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459737164.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.830 kcal (2) G-P(sol) polarization free energy of solvation -27.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds