Wall clock time and date at job start Tue Mar 31 2020 06:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47236 * 2 1 4 4 C 1.52997 * 109.47236 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47153 * 304.99767 * 4 3 2 6 6 C 1.53002 * 109.46817 * 184.99998 * 4 3 2 7 7 N 1.46896 * 109.47181 * 65.00049 * 6 4 3 8 8 C 1.46904 * 111.00016 * 179.97438 * 7 6 4 9 9 C 1.53001 * 109.47256 * 179.97438 * 8 7 6 10 10 C 1.52998 * 109.47223 * 300.00243 * 9 8 7 11 11 C 1.53002 * 109.46762 * 60.00300 * 9 8 7 12 12 C 1.50699 * 109.47044 * 179.97438 * 9 8 7 13 13 H 1.07997 * 120.00171 * 0.02562 * 12 9 8 14 14 C 1.37876 * 119.99971 * 180.02562 * 12 9 8 15 15 N 1.31512 * 119.99917 * 0.02562 * 14 12 9 16 16 Si 1.86796 * 119.99986 * 180.02562 * 14 12 9 17 17 H 1.48503 * 109.47053 * 90.00004 * 16 14 12 18 18 H 1.48503 * 109.47028 * 210.00117 * 16 14 12 19 19 H 1.48502 * 109.47103 * 330.00376 * 16 14 12 20 20 C 1.50701 * 109.47212 * 64.99766 * 4 3 2 21 21 C 1.38236 * 119.99963 * 59.72884 * 20 4 3 22 22 C 1.38236 * 120.00036 * 179.81111 * 21 20 4 23 23 C 1.38226 * 119.99834 * 0.39071 * 22 21 20 24 24 C 1.38237 * 120.00085 * 359.86461 * 23 22 21 25 25 C 1.38229 * 120.00216 * 240.00128 * 20 4 3 26 26 H 1.08993 * 109.47322 * 300.00158 * 1 2 3 27 27 H 1.09004 * 109.46881 * 60.00519 * 1 2 3 28 28 H 1.09002 * 109.47196 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47630 * 239.99870 * 2 1 3 30 30 H 1.09004 * 109.47346 * 119.99740 * 2 1 3 31 31 H 1.09001 * 109.46917 * 59.99433 * 3 2 1 32 32 H 1.09004 * 109.46741 * 300.00111 * 3 2 1 33 33 H 1.09008 * 109.46873 * 184.99985 * 6 4 3 34 34 H 1.08997 * 109.47047 * 304.99674 * 6 4 3 35 35 H 1.00903 * 111.00011 * 303.95191 * 7 6 4 36 36 H 1.08998 * 109.47006 * 300.00352 * 8 7 6 37 37 H 1.09003 * 109.46947 * 60.00060 * 8 7 6 38 38 H 1.09008 * 109.46914 * 59.99776 * 10 9 8 39 39 H 1.08990 * 109.47272 * 179.97438 * 10 9 8 40 40 H 1.09002 * 109.46789 * 300.00081 * 10 9 8 41 41 H 1.08998 * 109.47080 * 59.99614 * 11 9 8 42 42 H 1.08998 * 109.46640 * 180.02562 * 11 9 8 43 43 H 1.09007 * 109.47127 * 299.99547 * 11 9 8 44 44 H 0.96998 * 120.00122 * 180.02562 * 15 14 12 45 45 H 1.08010 * 119.99941 * 359.97438 * 21 20 4 46 46 H 1.08001 * 119.99466 * 180.23187 * 22 21 20 47 47 H 1.08005 * 120.00406 * 179.83264 * 23 22 21 48 48 H 1.07998 * 120.00065 * 179.97438 * 24 23 22 49 49 H 1.08002 * 120.00084 * 359.97438 * 25 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8530 0.8410 6 6 4.0800 2.8796 0.1251 7 7 3.6919 3.4242 1.4330 8 6 4.1663 4.8057 1.5897 9 6 3.7434 5.3377 2.9605 10 6 2.2178 5.3067 3.0712 11 6 4.3523 4.4618 4.0574 12 6 4.2307 6.7546 3.1216 13 1 4.7860 7.2285 2.3257 14 6 3.9675 7.4461 4.2850 15 7 3.2917 6.8689 5.2544 16 14 4.5708 9.2027 4.4843 17 1 3.5343 10.1417 3.9851 18 1 4.8356 9.4752 5.9199 19 1 5.8222 9.3875 3.7064 20 6 4.0718 0.8422 -1.2886 21 6 3.7327 1.4190 -2.4983 22 6 4.1962 0.8706 -3.6795 23 6 4.9921 -0.2592 -3.6515 24 6 5.3269 -0.8391 -2.4421 25 6 4.8665 -0.2885 -1.2607 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 5.1663 2.8887 0.0355 34 1 3.6450 3.4900 -0.6663 35 1 2.6934 3.3671 1.5666 36 1 5.2532 4.8278 1.5104 37 1 3.7323 5.4297 0.8085 38 1 1.8658 4.2816 2.9549 39 1 1.9166 5.6853 4.0478 40 1 1.7841 5.9307 2.2897 41 1 5.4392 4.4839 3.9785 42 1 4.0506 4.8406 5.0340 43 1 4.0002 3.4367 3.9411 44 1 3.1062 7.3555 6.0728 45 1 3.1078 2.2997 -2.5203 46 1 3.9344 1.3235 -4.6244 47 1 5.3521 -0.6893 -4.5745 48 1 5.9484 -1.7220 -2.4202 49 1 5.1282 -0.7415 -0.3159 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459737164.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:02 Heat of formation + Delta-G solvation = -16.918940 kcal Electronic energy + Delta-G solvation = -23339.007865 eV Core-core repulsion = 20264.095911 eV Total energy + Delta-G solvation = -3074.911953 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.60585 -38.76515 -37.22382 -35.10125 -33.44828 -32.27125 -31.72782 -29.53336 -27.50545 -27.25269 -27.00874 -25.17655 -23.74681 -23.05841 -22.42242 -20.67671 -20.30172 -17.90260 -17.77450 -17.03339 -16.55121 -16.35342 -15.81734 -15.54170 -15.44593 -15.14970 -14.70382 -14.43877 -14.18313 -14.13697 -13.86959 -13.70757 -13.44461 -13.21643 -13.13083 -12.96201 -12.81991 -12.56721 -12.54613 -12.29103 -12.10776 -12.10067 -12.03978 -11.75547 -11.55294 -11.47141 -11.35248 -11.27841 -10.88640 -10.59799 -10.34057 -9.75925 -9.51751 -9.15403 -7.96579 -6.13517 0.51871 0.56258 1.41898 1.44057 1.52612 2.46521 2.93216 3.25362 3.40927 3.77751 3.92100 4.10380 4.15303 4.20749 4.26979 4.34743 4.43687 4.46615 4.60326 4.60638 4.68393 4.70280 4.75712 4.81455 4.87828 4.96458 4.99498 5.02747 5.11151 5.14492 5.17592 5.21049 5.24778 5.28300 5.32033 5.42878 5.44087 5.50056 5.54263 5.65645 5.68322 5.70219 5.77717 5.83397 6.17636 6.18992 6.26215 6.34669 6.50359 6.66708 6.95939 7.54015 9.01601 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.021362 B = 0.003312 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.408776 B = 8452.610551 C = 9157.818448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C -0.109 4.109 4 C -0.038 4.038 5 H 0.080 0.920 6 C 0.072 3.928 7 N -0.686 5.686 8 C 0.090 3.910 9 C 0.060 3.940 10 C -0.120 4.120 11 C -0.105 4.105 12 C -0.528 4.528 13 H 0.043 0.957 14 C 0.023 3.977 15 N -0.903 5.903 16 Si 0.944 3.056 17 H -0.278 1.278 18 H -0.285 1.285 19 H -0.274 1.274 20 C -0.074 4.074 21 C -0.128 4.128 22 C -0.126 4.126 23 C -0.133 4.133 24 C -0.124 4.124 25 C -0.128 4.128 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.025 0.975 35 H 0.340 0.660 36 H 0.045 0.955 37 H 0.007 0.993 38 H 0.034 0.966 39 H 0.056 0.944 40 H 0.016 0.984 41 H 0.008 0.992 42 H 0.049 0.951 43 H 0.035 0.965 44 H 0.258 0.742 45 H 0.118 0.882 46 H 0.136 0.864 47 H 0.140 0.860 48 H 0.139 0.861 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.437 -16.165 -15.718 22.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.152 4.152 3 C -0.147 4.147 4 C -0.056 4.056 5 H 0.099 0.901 6 C -0.057 4.057 7 N -0.319 5.319 8 C -0.039 4.039 9 C 0.059 3.941 10 C -0.178 4.178 11 C -0.163 4.163 12 C -0.567 4.567 13 H 0.062 0.938 14 C -0.176 4.176 15 N -0.542 5.542 16 Si 0.771 3.229 17 H -0.204 1.204 18 H -0.210 1.210 19 H -0.199 1.199 20 C -0.074 4.074 21 C -0.146 4.146 22 C -0.144 4.144 23 C -0.151 4.151 24 C -0.142 4.142 25 C -0.146 4.146 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.043 0.957 35 H 0.161 0.839 36 H 0.064 0.936 37 H 0.025 0.975 38 H 0.052 0.948 39 H 0.075 0.925 40 H 0.035 0.965 41 H 0.028 0.972 42 H 0.068 0.932 43 H 0.054 0.946 44 H 0.067 0.933 45 H 0.136 0.864 46 H 0.154 0.846 47 H 0.158 0.842 48 H 0.157 0.843 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.968 -16.391 -15.204 22.378 hybrid contribution -0.202 1.795 -0.177 1.815 sum -1.169 -14.596 -15.381 21.237 Atomic orbital electron populations 1.21767 0.95456 1.01916 1.01740 1.21433 0.96064 0.95944 1.01782 1.21661 0.93480 0.97794 1.01762 1.20113 0.95802 0.94847 0.94881 0.90145 1.21926 0.99814 0.94429 0.89537 1.60543 1.19863 1.20717 1.30786 1.21810 0.98104 0.86851 0.97180 1.18137 0.92547 0.92770 0.90603 1.21657 0.97808 0.97201 1.01132 1.21467 0.96846 0.96964 1.01009 1.21445 1.34968 0.99196 1.01082 0.93850 1.25529 0.95356 1.01019 0.95733 1.69961 1.40595 1.37429 1.06218 0.85777 0.78656 0.81425 0.77041 1.20440 1.21023 1.19872 1.19825 0.97460 0.95671 0.94458 1.21141 1.00740 1.00284 0.92449 1.21389 0.98019 0.96648 0.98379 1.21430 0.98608 0.96330 0.98730 1.21412 0.99951 1.00544 0.92323 1.21277 0.98107 0.96113 0.99134 0.92948 0.92779 0.92088 0.92236 0.92153 0.92120 0.92009 0.92387 0.95696 0.83943 0.93639 0.97477 0.94757 0.92490 0.96490 0.97234 0.93237 0.94641 0.93293 0.86353 0.84649 0.84189 0.84297 0.85572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.91 71.98 0.71 -1.99 16 2 C -0.11 -2.25 5.75 30.59 0.18 -2.07 16 3 C -0.11 -2.43 4.46 30.59 0.14 -2.30 16 4 C -0.04 -0.91 2.25 -11.54 -0.03 -0.93 16 5 H 0.08 2.04 7.88 -2.39 -0.02 2.02 16 6 C 0.07 2.11 4.89 86.30 0.42 2.53 16 7 N -0.69 -23.99 5.71 -513.88 -2.93 -26.92 16 8 C 0.09 3.78 4.59 86.30 0.40 4.18 16 9 C 0.06 2.93 0.57 -52.93 -0.03 2.90 16 10 C -0.12 -5.67 7.92 71.98 0.57 -5.10 16 11 C -0.11 -5.19 8.09 71.98 0.58 -4.60 16 12 C -0.53 -28.92 8.01 25.60 0.21 -28.71 16 13 H 0.04 2.38 7.74 -2.91 -0.02 2.36 16 14 C 0.02 1.24 5.15 84.65 0.44 1.68 16 15 N -0.90 -50.70 9.35 21.45 0.20 -50.50 16 16 Si 0.94 43.68 29.54 68.60 2.03 45.71 16 17 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 18 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 19 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 20 C -0.07 -1.63 3.76 -19.87 -0.07 -1.71 16 21 C -0.13 -2.71 8.71 22.27 0.19 -2.52 16 22 C -0.13 -2.30 10.05 22.27 0.22 -2.08 16 23 C -0.13 -2.22 10.05 22.27 0.22 -1.99 16 24 C -0.12 -2.17 10.05 22.27 0.22 -1.95 16 25 C -0.13 -2.61 9.67 22.27 0.22 -2.39 16 26 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 28 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.06 1.18 7.38 -2.39 -0.02 1.16 16 30 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.06 1.48 6.47 -2.39 -0.02 1.47 16 32 H 0.06 1.34 7.21 -2.39 -0.02 1.33 16 33 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 34 H 0.02 0.72 7.59 -2.39 -0.02 0.70 16 35 H 0.34 11.54 4.93 -89.69 -0.44 11.10 16 36 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 38 H 0.03 1.41 6.57 -2.38 -0.02 1.39 16 39 H 0.06 3.00 6.07 -2.39 -0.01 2.99 16 40 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 42 H 0.05 2.68 6.07 -2.39 -0.01 2.67 16 43 H 0.03 1.59 7.60 -2.38 -0.02 1.57 16 44 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 45 H 0.12 2.44 7.13 -2.91 -0.02 2.42 16 46 H 0.14 1.90 8.06 -2.91 -0.02 1.87 16 47 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 48 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 49 H 0.13 2.33 7.95 -2.91 -0.02 2.31 16 Total: -1.00 -58.06 376.12 4.33 -53.74 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: 0.45 Total: 25.03 kcal Atomic # 6 Polarization: -51.64 SS G_CDS: 4.59 Total: -47.05 kcal Atomic # 7 Polarization: -74.69 SS G_CDS: -2.73 Total: -77.43 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -58.06 4.33 -53.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459737164.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.817 kcal (2) G-P(sol) polarization free energy of solvation -58.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds