Wall clock time and date at job start Tue Mar 31 2020 06:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47131 * 2 1 4 4 C 1.52999 * 109.46782 * 119.99771 * 2 1 3 5 5 H 1.09008 * 109.47126 * 294.08227 * 4 2 1 6 6 C 1.53002 * 109.47111 * 174.08848 * 4 2 1 7 7 N 1.46890 * 109.47424 * 65.31562 * 6 4 2 8 8 C 1.46896 * 111.00138 * 180.02562 * 7 6 4 9 9 C 1.53002 * 109.47170 * 180.02562 * 8 7 6 10 10 C 1.52997 * 109.47090 * 299.99902 * 9 8 7 11 11 C 1.52992 * 109.47260 * 60.00597 * 9 8 7 12 12 C 1.50706 * 109.46741 * 180.02562 * 9 8 7 13 13 H 1.07998 * 120.00549 * 0.02562 * 12 9 8 14 14 C 1.37877 * 119.99808 * 179.97438 * 12 9 8 15 15 N 1.31523 * 120.00072 * 0.02562 * 14 12 9 16 16 Si 1.86794 * 120.00189 * 180.02562 * 14 12 9 17 17 H 1.48496 * 109.47189 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.47355 * 120.00297 * 16 14 12 19 19 H 1.48503 * 109.47442 * 240.00168 * 16 14 12 20 20 C 1.50699 * 109.47194 * 54.08295 * 4 2 1 21 21 C 1.38233 * 119.99892 * 59.72861 * 20 4 2 22 22 C 1.38233 * 119.99742 * 179.78842 * 21 20 4 23 23 C 1.38234 * 120.00068 * 0.43670 * 22 21 20 24 24 C 1.38228 * 119.99947 * 359.81558 * 23 22 21 25 25 C 1.38229 * 120.00405 * 359.97347 * 24 23 22 26 26 H 1.08999 * 109.47403 * 300.00511 * 1 2 3 27 27 H 1.09006 * 109.46816 * 59.99891 * 1 2 3 28 28 H 1.09000 * 109.47832 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46881 * 239.99427 * 2 1 3 30 30 H 1.09003 * 109.47097 * 190.88741 * 3 2 1 31 31 H 1.08998 * 109.47102 * 310.87899 * 3 2 1 32 32 H 1.09002 * 109.47872 * 70.88775 * 3 2 1 33 33 H 1.09008 * 109.46410 * 305.31408 * 6 4 2 34 34 H 1.09004 * 109.47290 * 185.32404 * 6 4 2 35 35 H 1.00906 * 110.99746 * 56.05073 * 7 6 4 36 36 H 1.08995 * 109.47598 * 300.00495 * 8 7 6 37 37 H 1.09008 * 109.47051 * 60.00660 * 8 7 6 38 38 H 1.08999 * 109.46625 * 60.00580 * 10 9 8 39 39 H 1.09003 * 109.46899 * 179.97438 * 10 9 8 40 40 H 1.08998 * 109.47676 * 299.99888 * 10 9 8 41 41 H 1.09006 * 109.47399 * 59.99720 * 11 9 8 42 42 H 1.09003 * 109.47633 * 179.97438 * 11 9 8 43 43 H 1.09008 * 109.46982 * 299.99971 * 11 9 8 44 44 H 0.96995 * 119.99907 * 179.97438 * 15 14 12 45 45 H 1.07999 * 119.99992 * 0.02562 * 21 20 4 46 46 H 1.08005 * 120.00060 * 180.27818 * 22 21 20 47 47 H 1.08007 * 120.00023 * 179.83896 * 23 22 21 48 48 H 1.08004 * 119.99945 * 179.97438 * 24 23 22 49 49 H 1.07996 * 120.00384 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.7656 -0.1498 2.1361 6 6 3.5627 -0.8512 1.1773 7 7 4.1713 0.4845 1.2321 8 6 5.6362 0.3988 1.1646 9 6 6.2329 1.8064 1.2249 10 6 5.7154 2.6306 0.0444 11 6 5.8214 2.4789 2.5360 12 6 7.7357 1.7183 1.1550 13 1 8.2171 0.7548 1.0751 14 6 8.4961 2.8678 1.1920 15 7 7.9099 4.0412 1.2888 16 14 10.3588 2.7588 1.1047 17 1 10.7670 1.3349 0.9997 18 1 10.8429 3.5011 -0.0870 19 1 10.9476 3.3539 2.3313 20 6 1.4215 -2.0934 1.3247 21 6 1.6265 -3.0010 0.3025 22 6 1.0628 -4.2612 0.3738 23 6 0.2868 -4.6107 1.4631 24 6 0.0776 -3.7013 2.4828 25 6 0.6447 -2.4426 2.4137 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3635 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 3.1126 1.4486 -0.1941 31 1 1.5270 2.0092 -0.7770 32 1 1.8439 1.8973 0.9710 33 1 3.8418 -1.3397 0.2436 34 1 3.9167 -1.4467 2.0188 35 1 3.8757 0.9830 2.0582 36 1 6.0050 -0.1881 2.0058 37 1 5.9295 -0.0808 0.2306 38 1 4.6284 2.6943 0.0947 39 1 6.1401 3.6336 0.0877 40 1 6.0086 2.1515 -0.8896 41 1 6.1902 1.8916 3.3771 42 1 6.2469 3.4816 2.5793 43 1 4.7344 2.5426 2.5862 44 1 8.4449 4.8499 1.3152 45 1 2.2301 -2.7269 -0.5501 46 1 1.2267 -4.9719 -0.4228 47 1 -0.1557 -5.5944 1.5175 48 1 -0.5291 -3.9741 3.3337 49 1 0.4816 -1.7322 3.2106 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459739875.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:05 Heat of formation + Delta-G solvation = -5.164993 kcal Electronic energy + Delta-G solvation = -23797.446646 eV Core-core repulsion = 20723.044382 eV Total energy + Delta-G solvation = -3074.402264 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.72102 -38.83774 -37.39188 -34.91309 -32.90460 -32.16104 -31.71465 -28.81077 -27.70141 -27.44473 -27.12579 -25.51742 -23.82611 -23.16342 -22.32640 -20.56170 -20.12108 -17.87996 -17.72135 -16.91081 -16.45643 -16.29914 -15.93582 -15.42799 -15.30188 -14.85588 -14.77400 -14.26642 -14.22896 -14.05845 -13.92698 -13.43801 -13.27645 -13.11124 -13.02751 -12.95103 -12.73923 -12.52453 -12.51410 -12.30450 -12.11869 -12.08179 -11.98493 -11.81102 -11.52472 -11.37653 -11.25843 -11.14882 -10.85652 -10.54242 -10.31306 -9.75303 -9.49550 -8.94434 -7.95392 -6.11796 0.52691 0.56795 1.40605 1.44284 1.53309 2.47060 2.93948 3.26651 3.42304 3.76841 3.99327 4.16745 4.21383 4.23222 4.33770 4.40868 4.52506 4.57082 4.64858 4.69094 4.73036 4.74940 4.83813 4.92267 4.99043 5.01869 5.08484 5.08906 5.14557 5.21692 5.23180 5.25736 5.32689 5.34860 5.44981 5.47280 5.57619 5.61763 5.65713 5.69129 5.72257 5.81601 5.85178 6.03326 6.19287 6.23889 6.29413 6.38480 6.52701 6.68133 6.98543 7.55722 9.02523 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.026017 B = 0.003410 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.949524 B = 8208.006843 C = 8711.290185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.067 4.067 3 C -0.151 4.151 4 C -0.033 4.033 5 H 0.075 0.925 6 C 0.072 3.928 7 N -0.669 5.669 8 C 0.088 3.912 9 C 0.062 3.938 10 C -0.106 4.106 11 C -0.120 4.120 12 C -0.526 4.526 13 H 0.042 0.958 14 C 0.023 3.977 15 N -0.902 5.902 16 Si 0.942 3.058 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.283 1.283 20 C -0.072 4.072 21 C -0.128 4.128 22 C -0.126 4.126 23 C -0.134 4.134 24 C -0.125 4.125 25 C -0.130 4.130 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.086 0.914 31 H 0.037 0.963 32 H 0.042 0.958 33 H 0.065 0.935 34 H 0.017 0.983 35 H 0.338 0.662 36 H 0.003 0.997 37 H 0.047 0.953 38 H 0.043 0.957 39 H 0.045 0.955 40 H 0.008 0.992 41 H 0.013 0.987 42 H 0.054 0.946 43 H 0.036 0.964 44 H 0.256 0.744 45 H 0.119 0.881 46 H 0.135 0.865 47 H 0.140 0.860 48 H 0.139 0.861 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.309 -13.230 0.183 21.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.086 4.086 3 C -0.208 4.208 4 C -0.052 4.052 5 H 0.094 0.906 6 C -0.058 4.058 7 N -0.300 5.300 8 C -0.041 4.041 9 C 0.062 3.938 10 C -0.164 4.164 11 C -0.178 4.178 12 C -0.565 4.565 13 H 0.060 0.940 14 C -0.176 4.176 15 N -0.542 5.542 16 Si 0.769 3.231 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.073 4.073 21 C -0.146 4.146 22 C -0.144 4.144 23 C -0.152 4.152 24 C -0.143 4.143 25 C -0.148 4.148 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.105 0.895 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.083 0.917 34 H 0.035 0.965 35 H 0.157 0.843 36 H 0.021 0.979 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.027 0.973 41 H 0.032 0.968 42 H 0.073 0.927 43 H 0.055 0.945 44 H 0.066 0.934 45 H 0.137 0.863 46 H 0.153 0.847 47 H 0.157 0.843 48 H 0.156 0.844 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -17.325 -12.929 -0.479 21.623 hybrid contribution 1.613 -0.148 0.841 1.825 sum -15.712 -13.076 0.362 20.445 Atomic orbital electron populations 1.21828 0.95158 1.01217 1.01528 1.20911 0.95128 0.96325 0.96231 1.22100 1.03937 0.94573 1.00173 1.20196 0.93092 0.92411 0.99470 0.90629 1.21956 0.93590 0.90244 0.99960 1.60846 1.07197 1.16608 1.45366 1.21832 0.86754 0.97815 0.97736 1.18109 0.92494 0.90521 0.92705 1.21508 0.97846 1.00649 0.96386 1.21661 0.97199 1.01850 0.97121 1.21493 0.92910 0.92146 1.49913 0.93999 1.25505 1.01619 0.95358 0.95132 1.69973 1.35479 0.97574 1.51124 0.85763 0.82114 0.77854 0.77385 1.19797 1.20939 1.20915 1.19835 0.97393 0.95302 0.94747 1.21155 1.00491 0.94105 0.98807 1.21399 0.97613 0.96413 0.99004 1.21423 0.99167 1.00417 0.94202 1.21401 0.99874 0.93512 0.99469 1.21269 0.98155 0.97435 0.97989 0.92878 0.92762 0.93063 0.92222 0.89523 0.94439 0.93838 0.91664 0.96477 0.84253 0.97863 0.93478 0.93794 0.93574 0.97302 0.96770 0.92664 0.94505 0.93393 0.86262 0.84673 0.84257 0.84353 0.85561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 8.83 71.98 0.64 -2.26 16 2 C -0.07 -1.59 2.24 -10.80 -0.02 -1.61 16 3 C -0.15 -4.06 8.15 71.98 0.59 -3.47 16 4 C -0.03 -0.77 1.90 -11.54 -0.02 -0.79 16 5 H 0.08 1.76 7.83 -2.38 -0.02 1.75 16 6 C 0.07 2.01 4.80 86.31 0.41 2.42 16 7 N -0.67 -21.86 2.39 -513.89 -1.23 -23.09 16 8 C 0.09 3.56 4.59 86.30 0.40 3.96 16 9 C 0.06 2.95 0.57 -52.93 -0.03 2.92 16 10 C -0.11 -5.05 8.09 71.98 0.58 -4.47 16 11 C -0.12 -5.58 7.92 71.98 0.57 -5.01 16 12 C -0.53 -28.45 8.01 25.60 0.21 -28.24 16 13 H 0.04 2.29 7.74 -2.91 -0.02 2.26 16 14 C 0.02 1.24 5.15 84.65 0.44 1.68 16 15 N -0.90 -50.32 9.35 21.45 0.20 -50.12 16 16 Si 0.94 43.58 29.54 68.60 2.03 45.61 16 17 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 18 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 19 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 20 C -0.07 -1.58 3.27 -19.87 -0.06 -1.64 16 21 C -0.13 -2.70 8.74 22.27 0.19 -2.51 16 22 C -0.13 -2.31 10.05 22.27 0.22 -2.08 16 23 C -0.13 -2.23 10.05 22.27 0.22 -2.01 16 24 C -0.12 -2.15 10.05 22.27 0.22 -1.93 16 25 C -0.13 -2.59 9.67 22.27 0.22 -2.38 16 26 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 28 H 0.05 1.06 6.98 -2.39 -0.02 1.04 16 29 H 0.06 1.47 7.59 -2.39 -0.02 1.45 16 30 H 0.09 2.77 4.39 -2.39 -0.01 2.76 16 31 H 0.04 0.96 8.10 -2.39 -0.02 0.94 16 32 H 0.04 1.15 8.06 -2.39 -0.02 1.13 16 33 H 0.06 1.87 7.60 -2.38 -0.02 1.85 16 34 H 0.02 0.50 8.14 -2.38 -0.02 0.48 16 35 H 0.34 10.95 6.77 -89.69 -0.61 10.34 16 36 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 37 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 38 H 0.04 1.87 6.12 -2.39 -0.01 1.85 16 39 H 0.05 2.45 6.07 -2.39 -0.01 2.43 16 40 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 41 H 0.01 0.62 8.14 -2.38 -0.02 0.60 16 42 H 0.05 2.88 6.07 -2.39 -0.01 2.87 16 43 H 0.04 1.47 6.57 -2.38 -0.02 1.46 16 44 H 0.26 13.77 8.31 -92.71 -0.77 13.00 16 45 H 0.12 2.49 7.24 -2.91 -0.02 2.47 16 46 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 47 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 48 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 49 H 0.13 2.23 7.95 -2.91 -0.02 2.21 16 Total: -1.00 -56.67 369.25 6.05 -50.61 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: 0.29 Total: 24.42 kcal Atomic # 6 Polarization: -52.20 SS G_CDS: 4.77 Total: -47.43 kcal Atomic # 7 Polarization: -72.18 SS G_CDS: -1.03 Total: -73.21 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -56.67 6.05 -50.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459739875.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.447 kcal (2) G-P(sol) polarization free energy of solvation -56.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds