Wall clock time and date at job start Tue Mar 31 2020 06:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47121 * 2 1 4 4 C 1.53004 * 109.47285 * 240.00016 * 2 1 3 5 5 H 1.08999 * 109.46870 * 66.27513 * 4 2 1 6 6 C 1.52995 * 109.47308 * 186.27965 * 4 2 1 7 7 N 1.46904 * 109.47148 * 293.05811 * 6 4 2 8 8 C 1.46900 * 111.00166 * 180.02562 * 7 6 4 9 9 C 1.52997 * 109.47209 * 180.02562 * 8 7 6 10 10 C 1.52997 * 109.47340 * 300.00155 * 9 8 7 11 11 C 1.53003 * 109.46815 * 59.99934 * 9 8 7 12 12 C 1.50695 * 109.47216 * 179.97438 * 9 8 7 13 13 H 1.07997 * 120.00019 * 0.02562 * 12 9 8 14 14 C 1.37876 * 120.00112 * 179.97438 * 12 9 8 15 15 N 1.31511 * 120.00218 * 0.02562 * 14 12 9 16 16 Si 1.86806 * 119.99943 * 179.97438 * 14 12 9 17 17 H 1.48499 * 109.46595 * 90.00670 * 16 14 12 18 18 H 1.48502 * 109.46898 * 210.00337 * 16 14 12 19 19 H 1.48491 * 109.47067 * 330.00571 * 16 14 12 20 20 C 1.50699 * 109.47129 * 306.28010 * 4 2 1 21 21 C 1.38238 * 119.99996 * 299.72967 * 20 4 2 22 22 C 1.38232 * 119.99877 * 179.81174 * 21 20 4 23 23 C 1.38234 * 120.00182 * 0.38955 * 22 21 20 24 24 C 1.38234 * 119.99935 * 359.85731 * 23 22 21 25 25 C 1.38232 * 120.00221 * 119.99516 * 20 4 2 26 26 H 1.09005 * 109.47072 * 59.99842 * 1 2 3 27 27 H 1.09000 * 109.46785 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47013 * 300.00123 * 1 2 3 29 29 H 1.08996 * 109.47265 * 120.00212 * 2 1 3 30 30 H 1.09002 * 109.47307 * 50.86783 * 3 2 1 31 31 H 1.08998 * 109.47482 * 170.87154 * 3 2 1 32 32 H 1.09001 * 109.47249 * 290.87255 * 3 2 1 33 33 H 1.09001 * 109.46947 * 53.05764 * 6 4 2 34 34 H 1.08998 * 109.47318 * 173.06374 * 6 4 2 35 35 H 1.00899 * 111.00089 * 303.95635 * 7 6 4 36 36 H 1.09007 * 109.47001 * 300.00384 * 8 7 6 37 37 H 1.09002 * 109.46957 * 60.00019 * 8 7 6 38 38 H 1.08998 * 109.47015 * 59.99638 * 10 9 8 39 39 H 1.09001 * 109.47286 * 180.02562 * 10 9 8 40 40 H 1.09002 * 109.46853 * 300.00159 * 10 9 8 41 41 H 1.08997 * 109.47502 * 60.00309 * 11 9 8 42 42 H 1.09001 * 109.46840 * 179.97438 * 11 9 8 43 43 H 1.09000 * 109.47395 * 299.99405 * 11 9 8 44 44 H 0.96997 * 120.00508 * 179.97438 * 15 14 12 45 45 H 1.08001 * 119.99721 * 359.97438 * 21 20 4 46 46 H 1.08008 * 119.99768 * 180.22665 * 22 21 20 47 47 H 1.07996 * 119.99880 * 179.83551 * 23 22 21 48 48 H 1.07996 * 119.99729 * 179.97438 * 24 23 22 49 49 H 1.08007 * 119.99771 * 359.97438 * 25 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 1 1.7713 -0.1467 -2.1357 6 6 3.5618 -0.8593 -1.1729 7 7 4.1793 0.4706 -1.2622 8 6 5.6437 0.3770 -1.1927 9 6 6.2495 1.7787 -1.2881 10 6 5.8420 2.4212 -2.6154 11 6 5.7376 2.6354 -0.1283 12 6 7.7516 1.6826 -1.2161 13 1 8.2268 0.7183 -1.1132 14 6 8.5195 2.8258 -1.2829 15 7 7.9410 4.0001 -1.4087 16 14 10.3816 2.7068 -1.1930 17 1 10.9344 2.5541 -2.5628 18 1 10.9272 3.9414 -0.5737 19 1 10.7633 1.5304 -0.3711 20 6 1.4148 -2.0901 -1.3295 21 6 1.6212 -3.0048 -0.3137 22 6 1.0446 -4.2590 -0.3854 23 6 0.2681 -4.6015 -1.4767 24 6 0.0659 -3.6886 -2.4948 25 6 0.6395 -2.4330 -2.4213 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.5496 2.0013 0.7972 31 1 3.1177 1.4469 0.1630 32 1 1.8159 1.9071 -0.9602 33 1 3.8373 -1.3250 -0.2267 34 1 3.9124 -1.4787 -1.9984 35 1 3.8873 0.9493 -2.1010 36 1 5.9340 -0.0804 -0.2468 37 1 6.0082 -0.2338 -2.0186 38 1 4.7554 2.4907 -2.6670 39 1 6.2739 3.4196 -2.6835 40 1 6.2066 1.8108 -3.4416 41 1 6.0279 2.1777 0.8173 42 1 6.1695 3.6339 -0.1960 43 1 4.6510 2.7050 -0.1799 44 1 8.4812 4.8044 -1.4553 45 1 2.2309 -2.7385 0.5371 46 1 1.2028 -4.9724 0.4099 47 1 -0.1802 -5.5823 -1.5339 48 1 -0.5403 -3.9563 -3.3475 49 1 0.4815 -1.7196 -3.2167 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459739878.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:09 Heat of formation + Delta-G solvation = 4.082960 kcal Electronic energy + Delta-G solvation = -23787.571453 eV Core-core repulsion = 20713.570211 eV Total energy + Delta-G solvation = -3074.001243 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.83137 -37.48841 -36.00124 -33.34352 -31.60366 -30.96527 -30.70505 -27.62525 -26.59905 -25.54130 -25.17174 -24.03368 -22.89460 -22.08594 -21.39584 -19.45711 -18.38014 -16.91305 -15.95150 -15.42380 -15.29232 -15.15103 -14.59621 -14.33257 -13.98265 -13.70117 -13.55839 -13.38972 -12.76425 -12.64897 -12.42285 -12.28940 -12.00857 -11.93860 -11.75018 -11.40054 -11.25972 -11.09601 -11.04954 -10.83662 -10.80028 -10.58360 -10.44564 -10.30037 -10.17077 -10.11394 -9.95892 -9.35913 -9.07755 -8.97566 -8.65317 -8.58865 -8.26567 -7.54708 -5.89822 -4.00002 1.32238 1.34632 3.31938 3.39092 3.42203 3.73804 4.43926 4.58900 4.72298 4.91167 5.00055 5.04620 5.11371 5.26055 5.35741 5.36365 5.48030 5.49677 5.60638 5.72940 5.82955 5.93715 5.98200 6.00253 6.11067 6.11467 6.22735 6.28925 6.36528 6.43838 6.44428 6.46224 6.48347 6.60082 6.74271 6.75556 6.91620 6.96067 7.07389 7.14623 7.20148 7.45253 7.49743 7.75235 7.77888 7.85166 7.99143 8.23604 8.37069 8.57987 9.01587 9.65017 11.10568 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.025879 B = 0.003409 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.692272 B = 8210.631577 C = 8714.631010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.072 4.072 3 C -0.155 4.155 4 C -0.044 4.044 5 H 0.075 0.925 6 C 0.067 3.933 7 N -0.677 5.677 8 C 0.072 3.928 9 C 0.070 3.930 10 C -0.132 4.132 11 C -0.120 4.120 12 C -0.506 4.506 13 H 0.051 0.949 14 C 0.065 3.935 15 N -0.885 5.885 16 Si 0.887 3.113 17 H -0.283 1.283 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.060 4.060 21 C -0.114 4.114 22 C -0.120 4.120 23 C -0.132 4.132 24 C -0.120 4.120 25 C -0.120 4.120 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.064 0.936 30 H 0.033 0.967 31 H 0.109 0.891 32 H 0.043 0.957 33 H 0.068 0.932 34 H 0.022 0.978 35 H 0.337 0.663 36 H 0.055 0.945 37 H 0.012 0.988 38 H 0.011 0.989 39 H 0.082 0.918 40 H 0.017 0.983 41 H 0.017 0.983 42 H 0.073 0.927 43 H 0.023 0.977 44 H 0.257 0.743 45 H 0.122 0.878 46 H 0.118 0.882 47 H 0.116 0.884 48 H 0.118 0.882 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.981 -11.759 0.321 19.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.091 4.091 3 C -0.213 4.213 4 C -0.063 4.063 5 H 0.093 0.907 6 C -0.063 4.063 7 N -0.308 5.308 8 C -0.056 4.056 9 C 0.070 3.930 10 C -0.190 4.190 11 C -0.178 4.178 12 C -0.545 4.545 13 H 0.069 0.931 14 C -0.135 4.135 15 N -0.524 5.524 16 Si 0.716 3.284 17 H -0.209 1.209 18 H -0.213 1.213 19 H -0.201 1.201 20 C -0.061 4.061 21 C -0.132 4.132 22 C -0.138 4.138 23 C -0.150 4.150 24 C -0.138 4.138 25 C -0.138 4.138 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.052 0.948 31 H 0.128 0.872 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.040 0.960 35 H 0.156 0.844 36 H 0.074 0.926 37 H 0.030 0.970 38 H 0.030 0.970 39 H 0.101 0.899 40 H 0.036 0.964 41 H 0.036 0.964 42 H 0.092 0.908 43 H 0.042 0.958 44 H 0.068 0.932 45 H 0.140 0.860 46 H 0.136 0.864 47 H 0.135 0.865 48 H 0.136 0.864 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -15.986 -11.428 0.980 19.675 hybrid contribution 1.222 -0.572 -0.930 1.639 sum -14.764 -12.000 0.050 19.026 Atomic orbital electron populations 1.21916 0.96367 1.01052 1.01169 1.20983 0.94228 0.97500 0.96362 1.22186 1.05631 0.93398 1.00046 1.20345 0.94831 0.91575 0.99546 0.90693 1.21958 0.92109 0.91800 1.00412 1.60865 1.09406 1.16374 1.44189 1.22179 0.84639 1.00151 0.98617 1.18069 0.93660 0.88715 0.92601 1.21832 0.95830 1.03716 0.97600 1.21681 0.96868 1.02466 0.96797 1.21122 0.90923 0.92716 1.49759 0.93087 1.24875 0.98031 0.95471 0.95167 1.69829 1.34492 0.97513 1.50519 0.86678 0.86327 0.77409 0.78031 1.20910 1.21319 1.20084 1.19910 0.96449 0.95719 0.93972 1.21051 0.99886 0.93417 0.98848 1.21131 0.97822 0.96630 0.98183 1.21082 0.99819 0.99405 0.94698 1.21099 1.00050 0.93956 0.98731 1.21087 0.98093 0.96651 0.97954 0.93173 0.93170 0.93203 0.91763 0.94752 0.87231 0.93759 0.91395 0.96031 0.84438 0.92625 0.97010 0.97015 0.89881 0.96350 0.96384 0.90830 0.95764 0.93227 0.86048 0.86369 0.86548 0.86442 0.86328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.84 37.16 0.33 -1.33 16 2 C -0.07 -0.89 2.24 -90.62 -0.20 -1.10 16 3 C -0.16 -2.18 8.22 37.16 0.31 -1.87 16 4 C -0.04 -0.54 1.90 -91.77 -0.17 -0.72 16 5 H 0.07 0.94 7.83 -51.93 -0.41 0.53 16 6 C 0.07 0.96 4.75 -3.82 -0.02 0.94 16 7 N -0.68 -11.29 2.47 -113.78 -0.28 -11.57 16 8 C 0.07 1.47 4.59 -3.83 -0.02 1.46 16 9 C 0.07 1.66 0.57 -155.66 -0.09 1.57 16 10 C -0.13 -3.06 7.92 37.16 0.29 -2.77 16 11 C -0.12 -2.85 8.09 37.16 0.30 -2.55 16 12 C -0.51 -13.55 8.01 -34.44 -0.28 -13.83 16 13 H 0.05 1.37 7.74 -52.49 -0.41 0.97 16 14 C 0.07 1.77 5.15 -17.82 -0.09 1.67 16 15 N -0.88 -24.38 9.35 55.43 0.52 -23.86 16 16 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 C -0.06 -0.70 3.25 -104.62 -0.34 -1.04 16 21 C -0.11 -1.28 8.76 -39.58 -0.35 -1.63 16 22 C -0.12 -1.21 10.05 -39.59 -0.40 -1.61 16 23 C -0.13 -1.28 10.05 -39.58 -0.40 -1.67 16 24 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 25 C -0.12 -1.31 9.67 -39.58 -0.38 -1.69 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.56 6.98 -51.93 -0.36 0.20 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.82 7.62 -51.93 -0.40 0.42 16 30 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 31 H 0.11 1.79 4.45 -51.93 -0.23 1.56 16 32 H 0.04 0.62 8.09 -51.93 -0.42 0.20 16 33 H 0.07 0.99 7.61 -51.93 -0.40 0.59 16 34 H 0.02 0.32 8.13 -51.93 -0.42 -0.10 16 35 H 0.34 5.65 6.77 -39.29 -0.27 5.38 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.01 0.23 6.57 -51.93 -0.34 -0.11 16 39 H 0.08 2.16 6.07 -51.93 -0.32 1.84 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 1.93 6.07 -51.93 -0.32 1.62 16 43 H 0.02 0.51 6.22 -51.93 -0.32 0.19 16 44 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 45 H 0.12 1.31 7.28 -52.49 -0.38 0.93 16 46 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 47 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 48 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 49 H 0.12 1.17 7.95 -52.48 -0.42 0.75 16 LS Contribution 369.62 15.07 5.57 5.57 Total: -1.00 -26.73 369.62 -9.88 -36.60 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -8.76 Total: 4.92 kcal Atomic # 6 Polarization: -25.86 SS G_CDS: -1.90 Total: -27.76 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: 0.24 Total: -35.43 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -26.73 -9.88 -36.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459739878.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.687 kcal (2) G-P(sol) polarization free energy of solvation -26.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds