Wall clock time and date at job start Tue Mar 31 2020 06:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47121 * 2 1 4 4 C 1.53004 * 109.47285 * 240.00016 * 2 1 3 5 5 H 1.08999 * 109.46870 * 66.27513 * 4 2 1 6 6 C 1.52995 * 109.47308 * 186.27965 * 4 2 1 7 7 N 1.46904 * 109.47148 * 293.05811 * 6 4 2 8 8 C 1.46900 * 111.00166 * 180.02562 * 7 6 4 9 9 C 1.52997 * 109.47209 * 180.02562 * 8 7 6 10 10 C 1.52997 * 109.47340 * 300.00155 * 9 8 7 11 11 C 1.53003 * 109.46815 * 59.99934 * 9 8 7 12 12 C 1.50695 * 109.47216 * 179.97438 * 9 8 7 13 13 H 1.07997 * 120.00019 * 0.02562 * 12 9 8 14 14 C 1.37876 * 120.00112 * 179.97438 * 12 9 8 15 15 N 1.31511 * 120.00218 * 0.02562 * 14 12 9 16 16 Si 1.86806 * 119.99943 * 179.97438 * 14 12 9 17 17 H 1.48499 * 109.46595 * 90.00670 * 16 14 12 18 18 H 1.48502 * 109.46898 * 210.00337 * 16 14 12 19 19 H 1.48491 * 109.47067 * 330.00571 * 16 14 12 20 20 C 1.50699 * 109.47129 * 306.28010 * 4 2 1 21 21 C 1.38238 * 119.99996 * 299.72967 * 20 4 2 22 22 C 1.38232 * 119.99877 * 179.81174 * 21 20 4 23 23 C 1.38234 * 120.00182 * 0.38955 * 22 21 20 24 24 C 1.38234 * 119.99935 * 359.85731 * 23 22 21 25 25 C 1.38232 * 120.00221 * 119.99516 * 20 4 2 26 26 H 1.09005 * 109.47072 * 59.99842 * 1 2 3 27 27 H 1.09000 * 109.46785 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47013 * 300.00123 * 1 2 3 29 29 H 1.08996 * 109.47265 * 120.00212 * 2 1 3 30 30 H 1.09002 * 109.47307 * 50.86783 * 3 2 1 31 31 H 1.08998 * 109.47482 * 170.87154 * 3 2 1 32 32 H 1.09001 * 109.47249 * 290.87255 * 3 2 1 33 33 H 1.09001 * 109.46947 * 53.05764 * 6 4 2 34 34 H 1.08998 * 109.47318 * 173.06374 * 6 4 2 35 35 H 1.00899 * 111.00089 * 303.95635 * 7 6 4 36 36 H 1.09007 * 109.47001 * 300.00384 * 8 7 6 37 37 H 1.09002 * 109.46957 * 60.00019 * 8 7 6 38 38 H 1.08998 * 109.47015 * 59.99638 * 10 9 8 39 39 H 1.09001 * 109.47286 * 180.02562 * 10 9 8 40 40 H 1.09002 * 109.46853 * 300.00159 * 10 9 8 41 41 H 1.08997 * 109.47502 * 60.00309 * 11 9 8 42 42 H 1.09001 * 109.46840 * 179.97438 * 11 9 8 43 43 H 1.09000 * 109.47395 * 299.99405 * 11 9 8 44 44 H 0.96997 * 120.00508 * 179.97438 * 15 14 12 45 45 H 1.08001 * 119.99721 * 359.97438 * 21 20 4 46 46 H 1.08008 * 119.99768 * 180.22665 * 22 21 20 47 47 H 1.07996 * 119.99880 * 179.83551 * 23 22 21 48 48 H 1.07996 * 119.99729 * 179.97438 * 24 23 22 49 49 H 1.08007 * 119.99771 * 359.97438 * 25 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 1 1.7713 -0.1467 -2.1357 6 6 3.5618 -0.8593 -1.1729 7 7 4.1793 0.4706 -1.2622 8 6 5.6437 0.3770 -1.1927 9 6 6.2495 1.7787 -1.2881 10 6 5.8420 2.4212 -2.6154 11 6 5.7376 2.6354 -0.1283 12 6 7.7516 1.6826 -1.2161 13 1 8.2268 0.7183 -1.1132 14 6 8.5195 2.8258 -1.2829 15 7 7.9410 4.0001 -1.4087 16 14 10.3816 2.7068 -1.1930 17 1 10.9344 2.5541 -2.5628 18 1 10.9272 3.9414 -0.5737 19 1 10.7633 1.5304 -0.3711 20 6 1.4148 -2.0901 -1.3295 21 6 1.6212 -3.0048 -0.3137 22 6 1.0446 -4.2590 -0.3854 23 6 0.2681 -4.6015 -1.4767 24 6 0.0659 -3.6886 -2.4948 25 6 0.6395 -2.4330 -2.4213 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.5496 2.0013 0.7972 31 1 3.1177 1.4469 0.1630 32 1 1.8159 1.9071 -0.9602 33 1 3.8373 -1.3250 -0.2267 34 1 3.9124 -1.4787 -1.9984 35 1 3.8873 0.9493 -2.1010 36 1 5.9340 -0.0804 -0.2468 37 1 6.0082 -0.2338 -2.0186 38 1 4.7554 2.4907 -2.6670 39 1 6.2739 3.4196 -2.6835 40 1 6.2066 1.8108 -3.4416 41 1 6.0279 2.1777 0.8173 42 1 6.1695 3.6339 -0.1960 43 1 4.6510 2.7050 -0.1799 44 1 8.4812 4.8044 -1.4553 45 1 2.2309 -2.7385 0.5371 46 1 1.2028 -4.9724 0.4099 47 1 -0.1802 -5.5823 -1.5339 48 1 -0.5403 -3.9563 -3.3475 49 1 0.4815 -1.7196 -3.2167 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459739878.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:09 Heat of formation + Delta-G solvation = -5.746484 kcal Electronic energy + Delta-G solvation = -23787.997690 eV Core-core repulsion = 20713.570211 eV Total energy + Delta-G solvation = -3074.427479 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.71909 -38.83080 -37.39457 -34.92091 -32.90760 -32.15748 -31.71445 -28.81176 -27.69233 -27.44343 -27.13222 -25.51858 -23.83277 -23.15735 -22.33083 -20.56392 -20.11863 -17.87833 -17.71730 -16.91336 -16.46020 -16.30089 -15.93461 -15.42579 -15.30267 -14.85758 -14.77807 -14.26510 -14.23127 -14.05787 -13.92126 -13.42800 -13.27763 -13.10273 -13.02898 -12.94269 -12.74375 -12.54678 -12.51057 -12.31438 -12.11788 -12.07848 -11.99220 -11.81329 -11.52925 -11.37995 -11.25820 -11.15381 -10.85685 -10.55100 -10.31091 -9.75335 -9.49565 -8.95437 -7.95202 -6.11729 0.52677 0.56759 1.41730 1.44228 1.52360 2.47132 2.93953 3.26794 3.42026 3.76826 3.99258 4.16538 4.21304 4.23185 4.33706 4.40750 4.52410 4.57192 4.64801 4.69012 4.73061 4.74834 4.83595 4.92238 4.98806 5.01731 5.08242 5.08814 5.14541 5.21681 5.22961 5.25587 5.32627 5.34690 5.44660 5.47219 5.57559 5.61291 5.65686 5.69066 5.72067 5.81545 5.85094 6.02447 6.19245 6.23707 6.29396 6.38384 6.52667 6.67998 6.98475 7.55750 9.02552 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.025879 B = 0.003409 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.692272 B = 8210.631577 C = 8714.631010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.068 4.068 3 C -0.151 4.151 4 C -0.033 4.033 5 H 0.075 0.925 6 C 0.072 3.928 7 N -0.669 5.669 8 C 0.088 3.912 9 C 0.062 3.938 10 C -0.120 4.120 11 C -0.106 4.106 12 C -0.527 4.527 13 H 0.042 0.958 14 C 0.023 3.977 15 N -0.902 5.902 16 Si 0.941 3.059 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.274 1.274 20 C -0.072 4.072 21 C -0.128 4.128 22 C -0.126 4.126 23 C -0.134 4.134 24 C -0.125 4.125 25 C -0.131 4.131 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.037 0.963 31 H 0.086 0.914 32 H 0.042 0.958 33 H 0.065 0.935 34 H 0.017 0.983 35 H 0.338 0.662 36 H 0.047 0.953 37 H 0.003 0.997 38 H 0.036 0.964 39 H 0.055 0.945 40 H 0.013 0.987 41 H 0.008 0.992 42 H 0.045 0.955 43 H 0.043 0.957 44 H 0.257 0.743 45 H 0.119 0.881 46 H 0.135 0.865 47 H 0.140 0.860 48 H 0.139 0.861 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.373 -13.141 0.073 21.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.086 4.086 3 C -0.209 4.209 4 C -0.052 4.052 5 H 0.094 0.906 6 C -0.057 4.057 7 N -0.300 5.300 8 C -0.041 4.041 9 C 0.062 3.938 10 C -0.178 4.178 11 C -0.164 4.164 12 C -0.566 4.566 13 H 0.060 0.940 14 C -0.176 4.176 15 N -0.541 5.541 16 Si 0.768 3.232 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.199 1.199 20 C -0.073 4.073 21 C -0.146 4.146 22 C -0.144 4.144 23 C -0.152 4.152 24 C -0.143 4.143 25 C -0.149 4.149 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.056 0.944 31 H 0.105 0.895 32 H 0.062 0.938 33 H 0.084 0.916 34 H 0.035 0.965 35 H 0.157 0.843 36 H 0.065 0.935 37 H 0.022 0.978 38 H 0.055 0.945 39 H 0.073 0.927 40 H 0.032 0.968 41 H 0.027 0.973 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.066 0.934 45 H 0.137 0.863 46 H 0.153 0.847 47 H 0.157 0.843 48 H 0.156 0.844 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -17.387 -12.816 0.733 21.613 hybrid contribution 1.609 -0.189 -0.847 1.829 sum -15.778 -13.006 -0.114 20.448 Atomic orbital electron populations 1.21825 0.95145 1.01223 1.01530 1.20917 0.95159 0.96313 0.96229 1.22094 1.04058 0.94612 1.00107 1.20191 0.93053 0.92438 0.99484 0.90628 1.21958 0.93533 0.90200 1.00041 1.60824 1.07088 1.17945 1.44189 1.21831 0.86742 0.97744 0.97807 1.18103 0.92462 0.90571 0.92671 1.21661 0.97218 1.01775 0.97179 1.21502 0.97826 1.00656 0.96372 1.21463 0.92901 0.92377 1.49850 0.93988 1.25502 1.01633 0.95329 0.95110 1.69960 1.35538 0.97794 1.50845 0.85821 0.82068 0.77293 0.77974 1.20585 1.21092 1.19892 1.19834 0.97388 0.95277 0.94769 1.21156 1.00423 0.94095 0.98891 1.21399 0.97546 0.96503 0.98972 1.21423 0.99220 1.00384 0.94185 1.21402 0.99846 0.93514 0.99494 1.21270 0.98189 0.97478 0.97925 0.92885 0.93054 0.92750 0.92199 0.94383 0.89532 0.93835 0.91643 0.96479 0.84273 0.93480 0.97839 0.94510 0.92657 0.96788 0.97301 0.93572 0.93832 0.93377 0.86251 0.84664 0.84259 0.84360 0.85575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 8.84 71.98 0.64 -2.26 16 2 C -0.07 -1.59 2.24 -10.79 -0.02 -1.61 16 3 C -0.15 -4.07 8.22 71.98 0.59 -3.48 16 4 C -0.03 -0.77 1.90 -11.54 -0.02 -0.79 16 5 H 0.08 1.77 7.83 -2.39 -0.02 1.75 16 6 C 0.07 2.01 4.75 86.30 0.41 2.42 16 7 N -0.67 -21.89 2.47 -513.88 -1.27 -23.16 16 8 C 0.09 3.57 4.59 86.30 0.40 3.96 16 9 C 0.06 2.97 0.57 -52.93 -0.03 2.94 16 10 C -0.12 -5.59 7.92 71.98 0.57 -5.02 16 11 C -0.11 -5.04 8.09 71.98 0.58 -4.46 16 12 C -0.53 -28.52 8.01 25.60 0.21 -28.32 16 13 H 0.04 2.29 7.74 -2.91 -0.02 2.27 16 14 C 0.02 1.27 5.15 84.65 0.44 1.70 16 15 N -0.90 -50.35 9.35 21.45 0.20 -50.15 16 16 Si 0.94 43.55 29.54 68.60 2.03 45.58 16 17 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 18 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 19 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 20 C -0.07 -1.58 3.25 -19.87 -0.06 -1.64 16 21 C -0.13 -2.70 8.76 22.27 0.20 -2.50 16 22 C -0.13 -2.30 10.05 22.27 0.22 -2.08 16 23 C -0.13 -2.23 10.05 22.27 0.22 -2.01 16 24 C -0.12 -2.15 10.05 22.27 0.22 -1.93 16 25 C -0.13 -2.60 9.67 22.27 0.22 -2.39 16 26 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 27 H 0.05 1.06 6.98 -2.39 -0.02 1.04 16 28 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.06 1.47 7.62 -2.39 -0.02 1.45 16 30 H 0.04 0.97 8.12 -2.39 -0.02 0.95 16 31 H 0.09 2.77 4.45 -2.39 -0.01 2.75 16 32 H 0.04 1.15 8.09 -2.39 -0.02 1.13 16 33 H 0.07 1.87 7.61 -2.39 -0.02 1.85 16 34 H 0.02 0.50 8.13 -2.39 -0.02 0.48 16 35 H 0.34 10.96 6.77 -89.69 -0.61 10.35 16 36 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 37 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 38 H 0.04 1.47 6.57 -2.39 -0.02 1.46 16 39 H 0.05 2.89 6.07 -2.39 -0.01 2.87 16 40 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 42 H 0.05 2.45 6.07 -2.39 -0.01 2.43 16 43 H 0.04 1.85 6.22 -2.39 -0.01 1.84 16 44 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 45 H 0.12 2.48 7.28 -2.91 -0.02 2.46 16 46 H 0.14 1.91 8.06 -2.91 -0.02 1.88 16 47 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 48 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 49 H 0.13 2.24 7.95 -2.91 -0.02 2.21 16 Total: -1.00 -56.64 369.62 6.01 -50.63 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: 0.29 Total: 24.57 kcal Atomic # 6 Polarization: -52.23 SS G_CDS: 4.77 Total: -47.46 kcal Atomic # 7 Polarization: -72.24 SS G_CDS: -1.07 Total: -73.31 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -56.64 6.01 -50.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459739878.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.880 kcal (2) G-P(sol) polarization free energy of solvation -56.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds