Wall clock time and date at job start Tue Mar 31 2020 06:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.47128 * 2 1 4 4 C 1.53001 * 109.47079 * 178.83692 * 3 2 1 5 5 H 1.09000 * 109.47051 * 53.56397 * 4 3 2 6 6 C 1.52999 * 109.46757 * 173.55754 * 4 3 2 7 7 C 1.52999 * 109.46880 * 185.00116 * 6 4 3 8 8 C 1.50702 * 109.46943 * 180.02562 * 7 6 4 9 9 C 1.38244 * 119.99966 * 269.72367 * 8 7 6 10 10 C 1.38234 * 119.99608 * 179.76888 * 9 8 7 11 11 C 1.38226 * 120.00413 * 0.50747 * 10 9 8 12 12 C 1.38236 * 120.00259 * 359.74654 * 11 10 9 13 13 C 1.38235 * 120.00282 * 90.00498 * 8 7 6 14 14 N 1.46894 * 109.46992 * 293.55586 * 4 3 2 15 15 C 1.46904 * 110.99788 * 88.40017 * 14 4 3 16 16 H 1.09001 * 109.46916 * 339.72213 * 15 14 4 17 17 C 1.50703 * 109.46824 * 219.72690 * 15 14 4 18 18 H 1.08000 * 120.00274 * 359.97438 * 17 15 14 19 19 C 1.37881 * 119.99789 * 180.02562 * 17 15 14 20 20 N 1.31518 * 119.99803 * 359.97438 * 19 17 15 21 21 Si 1.86802 * 120.00035 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.46940 * 89.99726 * 21 19 17 23 23 H 1.48501 * 109.46945 * 209.99880 * 21 19 17 24 24 H 1.48507 * 109.46759 * 329.99772 * 21 19 17 25 25 C 1.52997 * 109.47190 * 99.72549 * 15 14 4 26 26 C 1.52995 * 109.47222 * 294.56198 * 25 15 14 27 27 H 1.09005 * 109.46940 * 59.99788 * 1 2 3 28 28 H 1.08993 * 109.46683 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46779 * 299.99856 * 1 2 3 30 30 H 1.09000 * 109.47152 * 240.00533 * 2 1 3 31 31 H 1.08991 * 109.47481 * 120.00252 * 2 1 3 32 32 H 1.09006 * 109.46531 * 58.84004 * 3 2 1 33 33 H 1.09000 * 109.46921 * 298.84087 * 3 2 1 34 34 H 1.09005 * 109.47048 * 65.00240 * 6 4 3 35 35 H 1.09003 * 109.47502 * 305.00161 * 6 4 3 36 36 H 1.08995 * 109.47066 * 60.00177 * 7 6 4 37 37 H 1.09002 * 109.47462 * 299.99910 * 7 6 4 38 38 H 1.07993 * 119.99615 * 359.97438 * 9 8 7 39 39 H 1.08000 * 119.99159 * 180.23269 * 10 9 8 40 40 H 1.08001 * 120.00261 * 179.72452 * 11 10 9 41 41 H 1.07997 * 120.00433 * 179.97438 * 12 11 10 42 42 H 1.08003 * 119.99506 * 359.97438 * 13 8 7 43 43 H 1.00900 * 111.00880 * 324.44167 * 14 4 3 44 44 H 0.97006 * 119.99662 * 180.02562 * 20 19 17 45 45 H 1.08996 * 109.47151 * 54.56620 * 25 15 14 46 46 H 1.09005 * 109.46770 * 174.56377 * 25 15 14 47 47 H 1.09004 * 109.47551 * 186.63086 * 26 25 15 48 48 H 1.09005 * 109.47071 * 306.62946 * 26 25 15 49 49 H 1.08992 * 109.47470 * 66.62833 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 3.5698 1.4426 0.0293 5 1 3.9488 0.8267 -0.7862 6 6 4.0828 2.8749 -0.1325 7 6 5.6097 2.8619 -0.2284 8 6 6.1151 4.2728 -0.3871 9 6 6.2767 4.8112 -1.6501 10 6 6.7357 6.1069 -1.7954 11 6 7.0431 6.8608 -0.6784 12 6 6.8866 6.3207 0.5845 13 6 6.4226 5.0266 0.7301 14 7 4.0350 0.8978 1.3117 15 6 4.1758 -0.5629 1.2430 16 1 3.5813 -0.9466 0.4138 17 6 3.6932 -1.1752 2.5327 18 1 3.3197 -0.5426 3.3243 19 6 3.7295 -2.5430 2.7024 20 7 4.1847 -3.3133 1.7385 21 14 3.1320 -3.3020 4.3013 22 1 1.6818 -3.6031 4.1947 23 1 3.8804 -4.5576 4.5632 24 1 3.3589 -2.3485 5.4170 25 6 5.6466 -0.9238 1.0260 26 6 6.0989 -0.4182 -0.3453 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3632 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6598 1.9623 0.8795 33 1 1.6938 1.9503 -0.9002 34 1 3.7779 3.4695 0.7287 35 1 3.6654 3.3101 -1.0406 36 1 5.9146 2.2674 -1.0895 37 1 6.0272 2.4269 0.6797 38 1 6.0411 4.2205 -2.5229 39 1 6.8583 6.5287 -2.7821 40 1 7.4060 7.8716 -0.7921 41 1 7.1271 6.9095 1.4573 42 1 6.3003 4.6046 1.7167 43 1 3.4186 1.1667 2.0639 44 1 4.2099 -4.2757 1.8578 45 1 6.2533 -0.4588 1.8030 46 1 5.7655 -2.0064 1.0714 47 1 7.1080 -0.7760 -0.5499 48 1 5.4192 -0.7902 -1.1120 49 1 6.0917 0.6717 -0.3513 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000462065606.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:02 Heat of formation + Delta-G solvation = -8.398904 kcal Electronic energy + Delta-G solvation = -23792.494970 eV Core-core repulsion = 20717.952473 eV Total energy + Delta-G solvation = -3074.542497 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.25369 -37.84521 -34.28230 -33.71887 -31.98252 -30.96693 -30.80517 -29.41916 -27.28673 -25.83447 -24.01769 -22.72863 -22.47439 -21.36425 -20.33124 -19.96283 -19.17401 -16.67804 -16.42693 -15.49573 -15.15403 -14.97734 -14.54584 -14.11793 -13.80429 -13.73995 -13.35216 -13.19250 -12.83847 -12.73097 -12.52661 -12.27023 -12.21890 -11.77718 -11.59106 -11.42308 -11.21382 -11.06524 -10.95961 -10.81425 -10.70306 -10.67423 -10.49745 -10.35426 -10.13290 -9.96400 -9.95305 -9.50637 -9.18313 -8.85290 -8.74826 -8.55377 -8.38540 -7.09143 -6.01277 -4.08329 1.45840 1.47205 3.28217 3.35947 3.39019 3.87451 4.40466 4.91727 4.95198 5.03450 5.18214 5.22466 5.32396 5.33733 5.54540 5.56622 5.61315 5.65380 5.76724 5.84910 5.89850 5.98643 6.06729 6.11046 6.19785 6.26226 6.28689 6.37564 6.40309 6.46098 6.49015 6.55458 6.57671 6.61331 6.65606 6.68296 6.73787 6.84953 6.91604 7.10757 7.12187 7.16771 7.25548 7.52612 7.65328 7.79837 8.00602 8.32907 8.46849 8.75432 9.06612 9.57743 11.02919 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.018005 B = 0.003982 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.768946 B = 7030.353876 C = 7673.505042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.140 4.140 3 C -0.139 4.139 4 C 0.084 3.916 5 H 0.073 0.927 6 C -0.094 4.094 7 C -0.078 4.078 8 C -0.068 4.068 9 C -0.123 4.123 10 C -0.122 4.122 11 C -0.136 4.136 12 C -0.121 4.121 13 C -0.117 4.117 14 N -0.681 5.681 15 C 0.212 3.788 16 H 0.022 0.978 17 C -0.522 4.522 18 H 0.056 0.944 19 C 0.066 3.934 20 N -0.885 5.885 21 Si 0.888 3.112 22 H -0.282 1.282 23 H -0.287 1.287 24 H -0.275 1.275 25 C -0.106 4.106 26 C -0.156 4.156 27 H 0.041 0.959 28 H 0.049 0.951 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.102 0.898 32 H 0.055 0.945 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.050 0.950 36 H 0.068 0.932 37 H 0.093 0.907 38 H 0.119 0.881 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.117 0.883 42 H 0.123 0.877 43 H 0.329 0.671 44 H 0.260 0.740 45 H 0.033 0.967 46 H 0.086 0.914 47 H 0.024 0.976 48 H 0.033 0.967 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.196 14.504 -5.983 15.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.177 4.177 3 C -0.178 4.178 4 C -0.027 4.027 5 H 0.091 0.909 6 C -0.133 4.133 7 C -0.115 4.115 8 C -0.068 4.068 9 C -0.141 4.141 10 C -0.140 4.140 11 C -0.154 4.154 12 C -0.139 4.139 13 C -0.135 4.135 14 N -0.311 5.311 15 C 0.104 3.896 16 H 0.040 0.960 17 C -0.561 4.561 18 H 0.074 0.926 19 C -0.137 4.137 20 N -0.523 5.523 21 Si 0.717 3.283 22 H -0.209 1.209 23 H -0.213 1.213 24 H -0.200 1.200 25 C -0.144 4.144 26 C -0.213 4.213 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.120 0.880 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.111 0.889 38 H 0.137 0.863 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.135 0.865 42 H 0.141 0.859 43 H 0.147 0.853 44 H 0.070 0.930 45 H 0.052 0.948 46 H 0.104 0.896 47 H 0.043 0.957 48 H 0.052 0.948 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.905 14.410 -6.158 15.786 hybrid contribution -1.251 -0.752 0.798 1.663 sum 0.654 13.658 -5.360 14.687 Atomic orbital electron populations 1.21741 0.97211 1.00928 1.00429 1.21847 0.94577 0.96814 1.04443 1.22289 0.97618 0.97160 1.00735 1.21693 0.91449 0.94697 0.94890 0.90910 1.21518 0.94113 0.97129 1.00503 1.20743 0.96250 0.90729 1.03825 1.20238 0.96776 0.97010 0.92799 1.21100 1.00404 0.95493 0.97117 1.21093 0.99884 0.94657 0.98389 1.21054 1.01745 0.99711 0.92873 1.21137 0.99889 0.95712 0.97162 1.21161 0.99284 0.94188 0.98842 1.60791 1.52852 1.14711 1.02746 1.19306 0.92771 0.81265 0.96243 0.95997 1.21426 1.41784 0.91770 1.01115 0.92568 1.24888 0.95168 0.97300 0.96297 1.69892 1.45973 1.04420 1.32055 0.86653 0.78654 0.78807 0.84218 1.20857 1.21304 1.19950 1.21534 0.97698 1.02436 0.92769 1.22081 0.98295 1.01207 0.99682 0.94012 0.93225 0.93345 0.92862 0.88003 0.92607 0.93319 0.92380 0.93127 0.91344 0.88892 0.86340 0.86585 0.86685 0.86476 0.85857 0.85283 0.93008 0.94773 0.89586 0.95689 0.94781 0.92376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.91 37.16 0.37 -1.87 16 2 C -0.14 -2.48 4.61 -26.73 -0.12 -2.60 16 3 C -0.14 -2.20 4.66 -26.73 -0.12 -2.32 16 4 C 0.08 1.39 1.53 -67.72 -0.10 1.28 16 5 H 0.07 1.31 6.04 -51.93 -0.31 1.00 16 6 C -0.09 -1.35 4.87 -26.73 -0.13 -1.48 16 7 C -0.08 -1.12 3.82 -27.88 -0.11 -1.22 16 8 C -0.07 -0.91 5.13 -104.62 -0.54 -1.44 16 9 C -0.12 -1.50 9.70 -39.58 -0.38 -1.89 16 10 C -0.12 -1.34 10.05 -39.59 -0.40 -1.74 16 11 C -0.14 -1.46 10.05 -39.59 -0.40 -1.85 16 12 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 13 C -0.12 -1.49 9.70 -39.58 -0.38 -1.87 16 14 N -0.68 -13.08 5.29 -100.95 -0.53 -13.62 16 15 C 0.21 4.87 1.05 -68.86 -0.07 4.80 16 16 H 0.02 0.56 5.27 -51.93 -0.27 0.28 16 17 C -0.52 -13.41 7.73 -34.44 -0.27 -13.67 16 18 H 0.06 1.44 7.42 -52.49 -0.39 1.05 16 19 C 0.07 1.74 5.29 -17.82 -0.09 1.64 16 20 N -0.88 -24.34 11.29 55.43 0.63 -23.72 16 21 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 25 C -0.11 -2.47 5.45 -26.73 -0.15 -2.61 16 26 C -0.16 -3.08 8.60 37.16 0.32 -2.76 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.98 8.00 -51.93 -0.42 0.57 16 31 H 0.10 2.17 5.10 -51.93 -0.27 1.90 16 32 H 0.06 0.87 8.00 -51.93 -0.42 0.45 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.98 6.73 -51.93 -0.35 0.63 16 37 H 0.09 1.50 7.27 -51.93 -0.38 1.12 16 38 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 39 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 41 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 42 H 0.12 1.52 8.06 -52.48 -0.42 1.09 16 43 H 0.33 6.47 7.53 -39.29 -0.30 6.18 16 44 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 45 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.09 2.27 5.94 -51.93 -0.31 1.96 16 47 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 48 H 0.03 0.68 7.83 -51.93 -0.41 0.27 16 49 H 0.06 1.04 3.38 -51.93 -0.18 0.87 16 LS Contribution 371.88 15.07 5.60 5.60 Total: -1.00 -26.21 371.88 -10.92 -37.13 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -8.62 Total: 10.25 kcal Atomic # 6 Polarization: -28.41 SS G_CDS: -2.98 Total: -31.39 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: 0.09 Total: -37.34 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -26.21 -10.92 -37.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000462065606.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.733 kcal (2) G-P(sol) polarization free energy of solvation -26.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds