Wall clock time and date at job start Tue Mar 31 2020 06:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.47128 * 2 1 4 4 C 1.53001 * 109.47079 * 178.83692 * 3 2 1 5 5 H 1.09000 * 109.47051 * 53.56397 * 4 3 2 6 6 C 1.52999 * 109.46757 * 173.55754 * 4 3 2 7 7 C 1.52999 * 109.46880 * 185.00116 * 6 4 3 8 8 C 1.50702 * 109.46943 * 180.02562 * 7 6 4 9 9 C 1.38244 * 119.99966 * 269.72367 * 8 7 6 10 10 C 1.38234 * 119.99608 * 179.76888 * 9 8 7 11 11 C 1.38226 * 120.00413 * 0.50747 * 10 9 8 12 12 C 1.38236 * 120.00259 * 359.74654 * 11 10 9 13 13 C 1.38235 * 120.00282 * 90.00498 * 8 7 6 14 14 N 1.46894 * 109.46992 * 293.55586 * 4 3 2 15 15 C 1.46904 * 110.99788 * 88.40017 * 14 4 3 16 16 H 1.09001 * 109.46916 * 339.72213 * 15 14 4 17 17 C 1.50703 * 109.46824 * 219.72690 * 15 14 4 18 18 H 1.08000 * 120.00274 * 359.97438 * 17 15 14 19 19 C 1.37881 * 119.99789 * 180.02562 * 17 15 14 20 20 N 1.31518 * 119.99803 * 359.97438 * 19 17 15 21 21 Si 1.86802 * 120.00035 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.46940 * 89.99726 * 21 19 17 23 23 H 1.48501 * 109.46945 * 209.99880 * 21 19 17 24 24 H 1.48507 * 109.46759 * 329.99772 * 21 19 17 25 25 C 1.52997 * 109.47190 * 99.72549 * 15 14 4 26 26 C 1.52995 * 109.47222 * 294.56198 * 25 15 14 27 27 H 1.09005 * 109.46940 * 59.99788 * 1 2 3 28 28 H 1.08993 * 109.46683 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46779 * 299.99856 * 1 2 3 30 30 H 1.09000 * 109.47152 * 240.00533 * 2 1 3 31 31 H 1.08991 * 109.47481 * 120.00252 * 2 1 3 32 32 H 1.09006 * 109.46531 * 58.84004 * 3 2 1 33 33 H 1.09000 * 109.46921 * 298.84087 * 3 2 1 34 34 H 1.09005 * 109.47048 * 65.00240 * 6 4 3 35 35 H 1.09003 * 109.47502 * 305.00161 * 6 4 3 36 36 H 1.08995 * 109.47066 * 60.00177 * 7 6 4 37 37 H 1.09002 * 109.47462 * 299.99910 * 7 6 4 38 38 H 1.07993 * 119.99615 * 359.97438 * 9 8 7 39 39 H 1.08000 * 119.99159 * 180.23269 * 10 9 8 40 40 H 1.08001 * 120.00261 * 179.72452 * 11 10 9 41 41 H 1.07997 * 120.00433 * 179.97438 * 12 11 10 42 42 H 1.08003 * 119.99506 * 359.97438 * 13 8 7 43 43 H 1.00900 * 111.00880 * 324.44167 * 14 4 3 44 44 H 0.97006 * 119.99662 * 180.02562 * 20 19 17 45 45 H 1.08996 * 109.47151 * 54.56620 * 25 15 14 46 46 H 1.09005 * 109.46770 * 174.56377 * 25 15 14 47 47 H 1.09004 * 109.47551 * 186.63086 * 26 25 15 48 48 H 1.09005 * 109.47071 * 306.62946 * 26 25 15 49 49 H 1.08992 * 109.47470 * 66.62833 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 3.5698 1.4426 0.0293 5 1 3.9488 0.8267 -0.7862 6 6 4.0828 2.8749 -0.1325 7 6 5.6097 2.8619 -0.2284 8 6 6.1151 4.2728 -0.3871 9 6 6.2767 4.8112 -1.6501 10 6 6.7357 6.1069 -1.7954 11 6 7.0431 6.8608 -0.6784 12 6 6.8866 6.3207 0.5845 13 6 6.4226 5.0266 0.7301 14 7 4.0350 0.8978 1.3117 15 6 4.1758 -0.5629 1.2430 16 1 3.5813 -0.9466 0.4138 17 6 3.6932 -1.1752 2.5327 18 1 3.3197 -0.5426 3.3243 19 6 3.7295 -2.5430 2.7024 20 7 4.1847 -3.3133 1.7385 21 14 3.1320 -3.3020 4.3013 22 1 1.6818 -3.6031 4.1947 23 1 3.8804 -4.5576 4.5632 24 1 3.3589 -2.3485 5.4170 25 6 5.6466 -0.9238 1.0260 26 6 6.0989 -0.4182 -0.3453 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3632 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6598 1.9623 0.8795 33 1 1.6938 1.9503 -0.9002 34 1 3.7779 3.4695 0.7287 35 1 3.6654 3.3101 -1.0406 36 1 5.9146 2.2674 -1.0895 37 1 6.0272 2.4269 0.6797 38 1 6.0411 4.2205 -2.5229 39 1 6.8583 6.5287 -2.7821 40 1 7.4060 7.8716 -0.7921 41 1 7.1271 6.9095 1.4573 42 1 6.3003 4.6046 1.7167 43 1 3.4186 1.1667 2.0639 44 1 4.2099 -4.2757 1.8578 45 1 6.2533 -0.4588 1.8030 46 1 5.7655 -2.0064 1.0714 47 1 7.1080 -0.7760 -0.5499 48 1 5.4192 -0.7902 -1.1120 49 1 6.0917 0.6717 -0.3513 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000462065606.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:01 Heat of formation + Delta-G solvation = -19.283204 kcal Electronic energy + Delta-G solvation = -23792.966948 eV Core-core repulsion = 20717.952473 eV Total energy + Delta-G solvation = -3075.014475 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.22666 -39.27642 -35.95567 -34.92349 -33.71457 -32.49959 -31.66822 -30.82256 -28.59309 -27.58512 -25.21439 -24.54743 -23.34574 -22.57609 -21.57404 -21.28033 -20.95944 -18.36172 -17.55659 -17.04072 -16.37881 -16.14298 -15.96035 -15.60101 -15.25749 -14.98617 -14.68781 -14.40944 -14.16232 -13.83106 -13.75620 -13.73435 -13.58800 -13.27188 -13.12738 -12.96905 -12.69687 -12.61837 -12.45026 -12.27357 -12.11718 -12.03472 -11.88230 -11.82879 -11.49875 -11.44155 -11.35166 -11.24560 -10.79911 -10.66063 -10.42046 -9.72863 -9.46999 -8.71957 -8.04409 -6.16863 0.56650 0.59253 1.40184 1.42963 1.51234 2.44341 2.98275 3.22336 3.80603 3.81232 4.07394 4.11731 4.24342 4.27265 4.31756 4.38700 4.44501 4.56692 4.65163 4.70229 4.70942 4.75401 4.79857 4.81450 4.89737 4.95339 4.98285 5.00357 5.08371 5.18571 5.24451 5.26816 5.28401 5.37123 5.40820 5.44008 5.48138 5.55222 5.61910 5.68462 5.68978 5.70867 5.77257 5.84960 5.92442 6.07920 6.24063 6.39242 6.63435 6.97889 7.19813 7.52746 8.98260 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.018005 B = 0.003982 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.768946 B = 7030.353876 C = 7673.505042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.137 4.137 3 C -0.131 4.131 4 C 0.085 3.915 5 H 0.058 0.942 6 C -0.083 4.083 7 C -0.070 4.070 8 C -0.084 4.084 9 C -0.133 4.133 10 C -0.125 4.125 11 C -0.137 4.137 12 C -0.127 4.127 13 C -0.134 4.134 14 N -0.674 5.674 15 C 0.223 3.777 16 H 0.002 0.998 17 C -0.530 4.530 18 H 0.052 0.948 19 C 0.020 3.980 20 N -0.912 5.912 21 Si 0.945 3.055 22 H -0.279 1.279 23 H -0.288 1.288 24 H -0.271 1.271 25 C -0.102 4.102 26 C -0.144 4.144 27 H 0.064 0.936 28 H 0.043 0.957 29 H 0.054 0.946 30 H 0.038 0.962 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.128 0.872 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.136 0.864 42 H 0.118 0.882 43 H 0.328 0.672 44 H 0.258 0.742 45 H 0.022 0.978 46 H 0.053 0.947 47 H 0.035 0.965 48 H 0.028 0.972 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.878 17.002 -6.668 18.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.174 4.174 3 C -0.170 4.170 4 C -0.025 4.025 5 H 0.076 0.924 6 C -0.121 4.121 7 C -0.107 4.107 8 C -0.084 4.084 9 C -0.151 4.151 10 C -0.143 4.143 11 C -0.154 4.154 12 C -0.145 4.145 13 C -0.152 4.152 14 N -0.304 5.304 15 C 0.115 3.885 16 H 0.019 0.981 17 C -0.569 4.569 18 H 0.070 0.930 19 C -0.180 4.180 20 N -0.552 5.552 21 Si 0.772 3.228 22 H -0.205 1.205 23 H -0.214 1.214 24 H -0.195 1.195 25 C -0.141 4.141 26 C -0.201 4.201 27 H 0.083 0.917 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.146 0.854 39 H 0.158 0.842 40 H 0.159 0.841 41 H 0.154 0.846 42 H 0.137 0.863 43 H 0.145 0.855 44 H 0.067 0.933 45 H 0.041 0.959 46 H 0.071 0.929 47 H 0.054 0.946 48 H 0.047 0.953 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.583 16.925 -6.841 18.324 hybrid contribution -1.130 -1.465 0.985 2.096 sum 0.453 15.461 -5.857 16.539 Atomic orbital electron populations 1.21693 0.95177 1.01062 1.01866 1.21731 0.96410 0.97545 1.01755 1.22207 0.96693 0.95995 1.02104 1.21723 0.92298 0.95698 0.92793 0.92369 1.21407 0.94254 0.95167 1.01289 1.20559 0.96039 0.91680 1.02420 1.20159 0.98194 0.96421 0.93671 1.21283 1.00621 0.96352 0.96884 1.21428 0.98918 0.94145 0.99785 1.21428 1.00730 1.00863 0.92420 1.21412 0.99329 0.95264 0.98453 1.21261 1.00222 0.95126 0.98604 1.60719 1.53269 1.12291 1.04166 1.19024 0.91923 0.83241 0.94318 0.98092 1.21749 1.41171 0.92017 1.01929 0.92956 1.25554 0.95587 0.97914 0.98923 1.70023 1.47174 1.04364 1.33610 0.85762 0.78141 0.77868 0.81057 1.20489 1.21393 1.19544 1.21400 0.97964 1.00279 0.94502 1.21961 0.98589 1.02356 0.97227 0.91742 0.93826 0.92652 0.94341 0.91932 0.92011 0.90971 0.92344 0.91391 0.91674 0.91195 0.85440 0.84163 0.84075 0.84605 0.86349 0.85508 0.93274 0.95936 0.92852 0.94560 0.95263 0.90450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.15 9.91 71.98 0.71 -3.44 16 2 C -0.14 -4.86 4.61 30.60 0.14 -4.72 16 3 C -0.13 -3.97 4.66 30.60 0.14 -3.83 16 4 C 0.09 2.79 1.53 44.92 0.07 2.85 16 5 H 0.06 2.09 6.04 -2.39 -0.01 2.08 16 6 C -0.08 -2.27 4.87 30.59 0.15 -2.12 16 7 C -0.07 -1.94 3.82 29.85 0.11 -1.83 16 8 C -0.08 -2.14 5.13 -19.86 -0.10 -2.24 16 9 C -0.13 -2.98 9.70 22.27 0.22 -2.76 16 10 C -0.12 -2.38 10.05 22.27 0.22 -2.16 16 11 C -0.14 -2.52 10.05 22.27 0.22 -2.29 16 12 C -0.13 -2.60 10.05 22.27 0.22 -2.38 16 13 C -0.13 -3.29 9.70 22.27 0.22 -3.07 16 14 N -0.67 -26.29 5.29 -473.31 -2.50 -28.79 16 15 C 0.22 10.60 1.05 44.17 0.05 10.65 16 16 H 0.00 0.08 5.27 -2.39 -0.01 0.06 16 17 C -0.53 -27.94 7.73 25.60 0.20 -27.74 16 18 H 0.05 2.74 7.42 -2.91 -0.02 2.71 16 19 C 0.02 1.06 5.29 84.66 0.45 1.51 16 20 N -0.91 -51.83 11.29 21.45 0.24 -51.59 16 21 Si 0.94 43.36 29.54 68.60 2.03 45.39 16 22 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 23 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 24 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 25 C -0.10 -4.94 5.45 30.59 0.17 -4.78 16 26 C -0.14 -5.78 8.60 71.98 0.62 -5.16 16 27 H 0.06 1.60 8.14 -2.38 -0.02 1.59 16 28 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.04 1.44 8.00 -2.39 -0.02 1.42 16 31 H 0.06 2.74 5.10 -2.39 -0.01 2.72 16 32 H 0.06 1.82 8.00 -2.38 -0.02 1.80 16 33 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 35 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.06 1.82 6.73 -2.39 -0.02 1.80 16 37 H 0.07 2.26 7.27 -2.39 -0.02 2.24 16 38 H 0.13 2.52 8.06 -2.91 -0.02 2.50 16 39 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 40 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 41 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 42 H 0.12 2.90 8.06 -2.91 -0.02 2.88 16 43 H 0.33 13.00 7.53 -89.69 -0.68 12.33 16 44 H 0.26 14.13 8.31 -92.70 -0.77 13.36 16 45 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.05 2.93 5.94 -2.38 -0.01 2.92 16 47 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 48 H 0.03 1.17 7.83 -2.38 -0.02 1.15 16 49 H 0.08 2.78 3.38 -2.39 -0.01 2.77 16 Total: -1.00 -57.59 371.88 3.80 -53.79 By element: Atomic # 1 Polarization: 34.50 SS G_CDS: 0.23 Total: 34.73 kcal Atomic # 6 Polarization: -57.33 SS G_CDS: 3.81 Total: -53.52 kcal Atomic # 7 Polarization: -78.12 SS G_CDS: -2.26 Total: -80.38 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -57.59 3.80 -53.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000462065606.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.504 kcal (2) G-P(sol) polarization free energy of solvation -57.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds