Wall clock time and date at job start Tue Mar 31 2020 06:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47117 * 2 1 4 4 C 1.52999 * 109.46803 * 174.84407 * 3 2 1 5 5 H 1.08995 * 109.47244 * 53.87875 * 4 3 2 6 6 C 1.53003 * 109.46708 * 173.87326 * 4 3 2 7 7 C 1.53000 * 109.47135 * 185.86215 * 6 4 3 8 8 C 1.50701 * 109.46925 * 174.23198 * 7 6 4 9 9 C 1.38229 * 120.00062 * 269.72554 * 8 7 6 10 10 C 1.38234 * 120.00160 * 179.76702 * 9 8 7 11 11 C 1.38242 * 119.99969 * 0.51376 * 10 9 8 12 12 C 1.38231 * 119.99443 * 359.74027 * 11 10 9 13 13 C 1.38235 * 120.00799 * 0.02562 * 12 11 10 14 14 N 1.46899 * 109.47238 * 293.87134 * 4 3 2 15 15 C 1.46896 * 110.99914 * 153.73533 * 14 4 3 16 16 H 1.09000 * 109.47481 * 27.59821 * 15 14 4 17 17 C 1.50700 * 109.47113 * 147.60114 * 15 14 4 18 18 H 1.07996 * 120.00247 * 359.97438 * 17 15 14 19 19 C 1.37882 * 119.99768 * 179.97438 * 17 15 14 20 20 N 1.31512 * 120.00322 * 0.02562 * 19 17 15 21 21 Si 1.86797 * 119.99675 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47433 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.46901 * 120.00124 * 21 19 17 24 24 H 1.48503 * 109.47332 * 240.00045 * 21 19 17 25 25 C 1.53007 * 109.46931 * 267.59980 * 15 14 4 26 26 C 1.52998 * 109.46762 * 66.90208 * 25 15 14 27 27 H 1.09008 * 109.47109 * 184.91816 * 1 2 3 28 28 H 1.09003 * 109.47001 * 304.91440 * 1 2 3 29 29 H 1.08995 * 109.47427 * 64.91979 * 1 2 3 30 30 H 1.08998 * 109.47421 * 239.99789 * 2 1 3 31 31 H 1.08999 * 109.47244 * 119.99592 * 2 1 3 32 32 H 1.08996 * 109.46719 * 54.84135 * 3 2 1 33 33 H 1.09001 * 109.46447 * 294.84313 * 3 2 1 34 34 H 1.09004 * 109.47301 * 305.86637 * 6 4 3 35 35 H 1.09008 * 109.47248 * 65.86198 * 6 4 3 36 36 H 1.09001 * 109.47103 * 294.23278 * 7 6 4 37 37 H 1.08997 * 109.47107 * 54.23490 * 7 6 4 38 38 H 1.08000 * 120.00313 * 0.02562 * 9 8 7 39 39 H 1.07999 * 120.00232 * 180.22882 * 10 9 8 40 40 H 1.07992 * 120.00120 * 179.72204 * 11 10 9 41 41 H 1.08008 * 120.00059 * 179.97438 * 12 11 10 42 42 H 1.07995 * 120.00511 * 179.97438 * 13 12 11 43 43 H 1.00896 * 110.99957 * 29.77771 * 14 4 3 44 44 H 0.96994 * 120.00021 * 179.97438 * 20 19 17 45 45 H 1.08996 * 109.46918 * 306.89915 * 25 15 14 46 46 H 1.09000 * 109.46925 * 186.90042 * 25 15 14 47 47 H 1.08997 * 109.47465 * 299.78811 * 26 25 15 48 48 H 1.08999 * 109.47569 * 59.79402 * 26 25 15 49 49 H 1.09006 * 109.46246 * 179.79142 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5645 1.4444 0.1296 5 1 3.9960 0.8145 -0.6482 6 6 4.0875 2.8741 -0.0235 7 6 5.6173 2.8585 -0.0402 8 6 6.1307 4.2449 -0.3323 9 6 6.3562 4.6375 -1.6383 10 6 6.8225 5.9109 -1.9066 11 6 7.0734 6.7882 -0.8681 12 6 6.8528 6.3937 0.4383 13 6 6.3819 5.1220 0.7063 14 7 3.9444 0.9227 1.4493 15 6 5.2879 0.3297 1.4141 16 1 5.8769 0.8105 0.6331 17 6 5.9611 0.5315 2.7472 18 1 5.4430 1.0489 3.5410 19 6 7.2386 0.0555 2.9533 20 7 7.8698 -0.5741 1.9865 21 14 8.0733 0.3063 4.6055 22 1 7.1577 1.0388 5.5167 23 1 8.4073 -1.0143 5.1968 24 1 9.3185 1.0932 4.4167 25 6 5.1768 -1.1678 1.1203 26 6 4.6524 -1.3707 -0.3026 27 1 -0.3634 -1.0240 0.0881 28 1 -0.3633 0.5882 0.8427 29 1 -0.3634 0.4356 -0.9307 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6032 1.9823 0.8402 33 1 1.7540 1.9289 -0.9326 34 1 3.7182 3.2981 -0.9573 35 1 3.7395 3.4799 0.8133 36 1 5.9880 2.5309 0.9311 37 1 5.9652 2.1721 -0.8122 38 1 6.1641 3.9508 -2.4495 39 1 6.9951 6.2189 -2.9272 40 1 7.4419 7.7814 -1.0774 41 1 7.0492 7.0789 1.2498 42 1 6.2100 4.8137 1.7270 43 1 3.2640 0.2573 1.7846 44 1 8.7687 -0.9086 2.1315 45 1 4.4889 -1.6272 1.8301 46 1 6.1592 -1.6304 1.2149 47 1 3.6684 -0.9113 -0.3962 48 1 5.3384 -0.9080 -1.0122 49 1 4.5768 -2.4376 -0.5131 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000462065607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:05 Heat of formation + Delta-G solvation = -2.880593 kcal Electronic energy + Delta-G solvation = -24026.587656 eV Core-core repulsion = 20952.284451 eV Total energy + Delta-G solvation = -3074.303205 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.09018 -37.95301 -34.50221 -33.67077 -32.01585 -30.94241 -30.58332 -28.95605 -27.81025 -25.83882 -23.97179 -22.72640 -22.24542 -21.45264 -20.39566 -19.80902 -19.39124 -16.48931 -16.14881 -15.69960 -14.96933 -14.85489 -14.54352 -14.50237 -13.87140 -13.57210 -13.27567 -13.08076 -12.85890 -12.76688 -12.66353 -12.23839 -12.10576 -11.89738 -11.62904 -11.38142 -11.22052 -11.15320 -10.91711 -10.82869 -10.73227 -10.70027 -10.55872 -10.31374 -10.07814 -10.00788 -9.81546 -9.62377 -9.50425 -8.81990 -8.63099 -8.32361 -8.22433 -7.06348 -5.94209 -3.96778 1.68314 1.70052 3.33047 3.41699 3.46228 4.10203 4.47344 5.00108 5.15428 5.17525 5.19157 5.28915 5.30378 5.32897 5.36459 5.44563 5.71707 5.73917 5.82607 5.85512 5.86096 5.95906 6.00462 6.11185 6.16147 6.17413 6.19570 6.26001 6.31931 6.40193 6.44096 6.44523 6.47074 6.55182 6.65591 6.75691 6.77682 6.82394 6.89470 7.02847 7.04379 7.20552 7.31356 7.37615 7.51191 7.82032 7.96507 8.38283 8.66317 8.70942 9.12455 9.68572 11.11470 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.008616 B = 0.006806 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3249.008125 B = 4112.891673 C = 6514.658316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.129 4.129 3 C -0.120 4.120 4 C 0.078 3.922 5 H 0.046 0.954 6 C -0.090 4.090 7 C -0.092 4.092 8 C -0.061 4.061 9 C -0.125 4.125 10 C -0.124 4.124 11 C -0.138 4.138 12 C -0.122 4.122 13 C -0.113 4.113 14 N -0.678 5.678 15 C 0.206 3.794 16 H 0.050 0.950 17 C -0.489 4.489 18 H 0.061 0.939 19 C 0.056 3.944 20 N -0.895 5.895 21 Si 0.889 3.111 22 H -0.274 1.274 23 H -0.287 1.287 24 H -0.286 1.286 25 C -0.150 4.150 26 C -0.160 4.160 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.046 0.954 35 H 0.064 0.936 36 H 0.112 0.888 37 H 0.062 0.938 38 H 0.116 0.884 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.116 0.884 42 H 0.125 0.875 43 H 0.323 0.677 44 H 0.258 0.742 45 H 0.029 0.971 46 H 0.097 0.903 47 H 0.049 0.951 48 H 0.042 0.958 49 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.623 7.375 -7.101 12.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.167 4.167 3 C -0.158 4.158 4 C -0.033 4.033 5 H 0.064 0.936 6 C -0.128 4.128 7 C -0.129 4.129 8 C -0.061 4.061 9 C -0.143 4.143 10 C -0.142 4.142 11 C -0.156 4.156 12 C -0.140 4.140 13 C -0.131 4.131 14 N -0.310 5.310 15 C 0.098 3.902 16 H 0.068 0.932 17 C -0.528 4.528 18 H 0.079 0.921 19 C -0.144 4.144 20 N -0.535 5.535 21 Si 0.718 3.282 22 H -0.198 1.198 23 H -0.214 1.214 24 H -0.213 1.213 25 C -0.189 4.189 26 C -0.217 4.217 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.130 0.870 37 H 0.080 0.920 38 H 0.135 0.865 39 H 0.132 0.868 40 H 0.132 0.868 41 H 0.134 0.866 42 H 0.143 0.857 43 H 0.142 0.858 44 H 0.067 0.933 45 H 0.048 0.952 46 H 0.116 0.884 47 H 0.068 0.932 48 H 0.061 0.939 49 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -7.230 7.905 -6.899 12.742 hybrid contribution 0.498 -0.824 0.321 1.015 sum -6.732 7.081 -6.578 11.778 Atomic orbital electron populations 1.21764 0.96325 1.01169 1.01385 1.21659 0.95299 0.97578 1.02160 1.21786 0.96170 0.96249 1.01564 1.21690 0.92913 0.95600 0.93078 0.93601 1.21481 0.94357 0.96793 1.00205 1.21001 0.95791 0.91011 1.05069 1.20238 0.96358 0.96772 0.92755 1.21078 1.00564 0.96168 0.96455 1.21052 1.00305 0.94209 0.98640 1.21013 1.02112 0.99404 0.93103 1.21121 0.99895 0.96471 0.96470 1.21203 0.98968 0.93396 0.99576 1.60864 1.05530 1.42229 1.22332 1.19514 0.84579 0.88503 0.97584 0.93198 1.21245 0.98557 1.34579 0.98445 0.92076 1.24926 0.97430 0.95562 0.96518 1.69874 1.12866 1.38995 1.31766 0.86578 0.79441 0.77649 0.84555 1.19815 1.21368 1.21255 1.22278 1.02548 1.02122 0.91990 1.22152 1.00359 0.99127 1.00059 0.93171 0.92787 0.93223 0.92180 0.91495 0.91537 0.92448 0.93548 0.91767 0.87001 0.91954 0.86546 0.86770 0.86847 0.86585 0.85684 0.85822 0.93253 0.95182 0.88443 0.93213 0.93925 0.95133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.91 37.16 0.37 -1.27 16 2 C -0.13 -1.69 4.62 -26.73 -0.12 -1.81 16 3 C -0.12 -1.66 4.78 -26.73 -0.13 -1.79 16 4 C 0.08 1.29 1.59 -67.71 -0.11 1.18 16 5 H 0.05 0.82 5.25 -51.93 -0.27 0.54 16 6 C -0.09 -1.48 4.87 -26.73 -0.13 -1.61 16 7 C -0.09 -1.67 3.81 -27.88 -0.11 -1.77 16 8 C -0.06 -1.02 5.13 -104.62 -0.54 -1.56 16 9 C -0.12 -1.86 9.70 -39.59 -0.38 -2.25 16 10 C -0.12 -1.66 10.05 -39.58 -0.40 -2.05 16 11 C -0.14 -1.81 10.05 -39.58 -0.40 -2.21 16 12 C -0.12 -1.71 10.05 -39.59 -0.40 -2.11 16 13 C -0.11 -1.84 9.70 -39.58 -0.38 -2.22 16 14 N -0.68 -13.28 5.93 -100.95 -0.60 -13.88 16 15 C 0.21 4.74 1.11 -68.86 -0.08 4.67 16 16 H 0.05 1.23 4.67 -51.93 -0.24 0.99 16 17 C -0.49 -12.86 8.49 -34.44 -0.29 -13.15 16 18 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 19 C 0.06 1.50 5.28 -17.82 -0.09 1.41 16 20 N -0.89 -24.83 11.29 55.43 0.63 -24.20 16 21 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 22 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 C -0.15 -3.39 5.20 -26.73 -0.14 -3.53 16 26 C -0.16 -3.05 8.61 37.16 0.32 -2.73 16 27 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.79 7.01 -51.93 -0.36 0.43 16 31 H 0.07 0.96 6.26 -51.93 -0.33 0.64 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 1.10 8.14 -51.92 -0.42 0.67 16 36 H 0.11 2.44 5.81 -51.93 -0.30 2.14 16 37 H 0.06 1.17 7.63 -51.93 -0.40 0.77 16 38 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 39 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 40 H 0.11 1.19 8.06 -52.49 -0.42 0.77 16 41 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 42 H 0.13 2.04 8.06 -52.49 -0.42 1.62 16 43 H 0.32 6.17 6.01 -39.29 -0.24 5.93 16 44 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 45 H 0.03 0.67 7.98 -51.93 -0.41 0.26 16 46 H 0.10 2.54 5.91 -51.93 -0.31 2.23 16 47 H 0.05 0.84 3.21 -51.93 -0.17 0.68 16 48 H 0.04 0.83 8.06 -51.93 -0.42 0.41 16 49 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 370.36 15.07 5.58 5.58 Total: -1.00 -26.87 370.36 -10.91 -37.78 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -8.49 Total: 11.31 kcal Atomic # 6 Polarization: -29.80 SS G_CDS: -3.01 Total: -32.81 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 0.03 Total: -38.08 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -26.87 -10.91 -37.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000462065607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.898 kcal (2) G-P(sol) polarization free energy of solvation -26.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds