Wall clock time and date at job start Tue Mar 31 2020 06:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47117 * 2 1 4 4 C 1.52999 * 109.46803 * 174.84407 * 3 2 1 5 5 H 1.08995 * 109.47244 * 53.87875 * 4 3 2 6 6 C 1.53003 * 109.46708 * 173.87326 * 4 3 2 7 7 C 1.53000 * 109.47135 * 185.86215 * 6 4 3 8 8 C 1.50701 * 109.46925 * 174.23198 * 7 6 4 9 9 C 1.38229 * 120.00062 * 269.72554 * 8 7 6 10 10 C 1.38234 * 120.00160 * 179.76702 * 9 8 7 11 11 C 1.38242 * 119.99969 * 0.51376 * 10 9 8 12 12 C 1.38231 * 119.99443 * 359.74027 * 11 10 9 13 13 C 1.38235 * 120.00799 * 0.02562 * 12 11 10 14 14 N 1.46899 * 109.47238 * 293.87134 * 4 3 2 15 15 C 1.46896 * 110.99914 * 153.73533 * 14 4 3 16 16 H 1.09000 * 109.47481 * 27.59821 * 15 14 4 17 17 C 1.50700 * 109.47113 * 147.60114 * 15 14 4 18 18 H 1.07996 * 120.00247 * 359.97438 * 17 15 14 19 19 C 1.37882 * 119.99768 * 179.97438 * 17 15 14 20 20 N 1.31512 * 120.00322 * 0.02562 * 19 17 15 21 21 Si 1.86797 * 119.99675 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47433 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.46901 * 120.00124 * 21 19 17 24 24 H 1.48503 * 109.47332 * 240.00045 * 21 19 17 25 25 C 1.53007 * 109.46931 * 267.59980 * 15 14 4 26 26 C 1.52998 * 109.46762 * 66.90208 * 25 15 14 27 27 H 1.09008 * 109.47109 * 184.91816 * 1 2 3 28 28 H 1.09003 * 109.47001 * 304.91440 * 1 2 3 29 29 H 1.08995 * 109.47427 * 64.91979 * 1 2 3 30 30 H 1.08998 * 109.47421 * 239.99789 * 2 1 3 31 31 H 1.08999 * 109.47244 * 119.99592 * 2 1 3 32 32 H 1.08996 * 109.46719 * 54.84135 * 3 2 1 33 33 H 1.09001 * 109.46447 * 294.84313 * 3 2 1 34 34 H 1.09004 * 109.47301 * 305.86637 * 6 4 3 35 35 H 1.09008 * 109.47248 * 65.86198 * 6 4 3 36 36 H 1.09001 * 109.47103 * 294.23278 * 7 6 4 37 37 H 1.08997 * 109.47107 * 54.23490 * 7 6 4 38 38 H 1.08000 * 120.00313 * 0.02562 * 9 8 7 39 39 H 1.07999 * 120.00232 * 180.22882 * 10 9 8 40 40 H 1.07992 * 120.00120 * 179.72204 * 11 10 9 41 41 H 1.08008 * 120.00059 * 179.97438 * 12 11 10 42 42 H 1.07995 * 120.00511 * 179.97438 * 13 12 11 43 43 H 1.00896 * 110.99957 * 29.77771 * 14 4 3 44 44 H 0.96994 * 120.00021 * 179.97438 * 20 19 17 45 45 H 1.08996 * 109.46918 * 306.89915 * 25 15 14 46 46 H 1.09000 * 109.46925 * 186.90042 * 25 15 14 47 47 H 1.08997 * 109.47465 * 299.78811 * 26 25 15 48 48 H 1.08999 * 109.47569 * 59.79402 * 26 25 15 49 49 H 1.09006 * 109.46246 * 179.79142 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5645 1.4444 0.1296 5 1 3.9960 0.8145 -0.6482 6 6 4.0875 2.8741 -0.0235 7 6 5.6173 2.8585 -0.0402 8 6 6.1307 4.2449 -0.3323 9 6 6.3562 4.6375 -1.6383 10 6 6.8225 5.9109 -1.9066 11 6 7.0734 6.7882 -0.8681 12 6 6.8528 6.3937 0.4383 13 6 6.3819 5.1220 0.7063 14 7 3.9444 0.9227 1.4493 15 6 5.2879 0.3297 1.4141 16 1 5.8769 0.8105 0.6331 17 6 5.9611 0.5315 2.7472 18 1 5.4430 1.0489 3.5410 19 6 7.2386 0.0555 2.9533 20 7 7.8698 -0.5741 1.9865 21 14 8.0733 0.3063 4.6055 22 1 7.1577 1.0388 5.5167 23 1 8.4073 -1.0143 5.1968 24 1 9.3185 1.0932 4.4167 25 6 5.1768 -1.1678 1.1203 26 6 4.6524 -1.3707 -0.3026 27 1 -0.3634 -1.0240 0.0881 28 1 -0.3633 0.5882 0.8427 29 1 -0.3634 0.4356 -0.9307 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6032 1.9823 0.8402 33 1 1.7540 1.9289 -0.9326 34 1 3.7182 3.2981 -0.9573 35 1 3.7395 3.4799 0.8133 36 1 5.9880 2.5309 0.9311 37 1 5.9652 2.1721 -0.8122 38 1 6.1641 3.9508 -2.4495 39 1 6.9951 6.2189 -2.9272 40 1 7.4419 7.7814 -1.0774 41 1 7.0492 7.0789 1.2498 42 1 6.2100 4.8137 1.7270 43 1 3.2640 0.2573 1.7846 44 1 8.7687 -0.9086 2.1315 45 1 4.4889 -1.6272 1.8301 46 1 6.1592 -1.6304 1.2149 47 1 3.6684 -0.9113 -0.3962 48 1 5.3384 -0.9080 -1.0122 49 1 4.5768 -2.4376 -0.5131 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000462065607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:05 Heat of formation + Delta-G solvation = -14.784878 kcal Electronic energy + Delta-G solvation = -24027.103864 eV Core-core repulsion = 20952.284451 eV Total energy + Delta-G solvation = -3074.819413 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.32859 -39.35782 -36.06988 -34.92658 -33.81308 -32.38964 -31.70207 -30.48659 -29.12816 -27.55485 -25.20328 -24.52626 -23.37129 -22.57609 -21.85492 -21.21762 -20.94392 -18.22472 -17.53897 -17.14289 -16.64490 -16.04819 -15.96602 -15.76117 -15.20485 -15.07400 -14.72803 -14.51512 -14.20318 -14.00432 -13.82092 -13.61199 -13.52453 -13.26084 -13.09499 -12.96411 -12.79179 -12.56962 -12.43946 -12.37280 -12.21807 -11.97345 -11.85956 -11.84943 -11.62300 -11.44885 -11.34725 -11.27562 -11.01313 -10.68259 -10.31331 -9.76038 -9.46817 -8.71047 -8.01585 -6.09760 0.54534 0.56100 1.38858 1.42320 1.52551 2.46570 2.95834 3.25573 3.74753 3.85577 4.04519 4.09855 4.18471 4.21359 4.24429 4.35063 4.43157 4.47541 4.53083 4.59829 4.69292 4.71012 4.75793 4.79280 4.81197 4.90809 4.93455 5.01152 5.07392 5.14856 5.16691 5.23415 5.25721 5.29263 5.35410 5.39555 5.42253 5.50228 5.54835 5.61336 5.65027 5.67171 5.69689 5.82920 5.91495 5.99414 6.21607 6.44679 6.83851 7.02928 7.09982 7.59439 9.01901 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.008616 B = 0.006806 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3249.008125 B = 4112.891673 C = 6514.658316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.128 4.128 3 C -0.111 4.111 4 C 0.078 3.922 5 H 0.038 0.962 6 C -0.082 4.082 7 C -0.079 4.079 8 C -0.084 4.084 9 C -0.134 4.134 10 C -0.121 4.121 11 C -0.134 4.134 12 C -0.125 4.125 13 C -0.138 4.138 14 N -0.681 5.681 15 C 0.216 3.784 16 H 0.032 0.968 17 C -0.499 4.499 18 H 0.046 0.954 19 C 0.012 3.988 20 N -0.918 5.918 21 Si 0.943 3.057 22 H -0.271 1.271 23 H -0.284 1.284 24 H -0.286 1.286 25 C -0.145 4.145 26 C -0.149 4.149 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.067 0.933 37 H 0.048 0.952 38 H 0.126 0.874 39 H 0.146 0.854 40 H 0.147 0.853 41 H 0.137 0.863 42 H 0.108 0.892 43 H 0.326 0.674 44 H 0.256 0.744 45 H 0.026 0.974 46 H 0.062 0.938 47 H 0.071 0.929 48 H 0.033 0.967 49 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.747 8.925 -8.493 15.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.166 4.166 3 C -0.149 4.149 4 C -0.032 4.032 5 H 0.056 0.944 6 C -0.120 4.120 7 C -0.116 4.116 8 C -0.084 4.084 9 C -0.152 4.152 10 C -0.139 4.139 11 C -0.152 4.152 12 C -0.142 4.142 13 C -0.156 4.156 14 N -0.313 5.313 15 C 0.107 3.893 16 H 0.050 0.950 17 C -0.538 4.538 18 H 0.065 0.935 19 C -0.185 4.185 20 N -0.559 5.559 21 Si 0.770 3.230 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.212 1.212 25 C -0.185 4.185 26 C -0.206 4.206 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.066 0.934 38 H 0.144 0.856 39 H 0.164 0.836 40 H 0.165 0.835 41 H 0.155 0.845 42 H 0.126 0.874 43 H 0.145 0.855 44 H 0.065 0.935 45 H 0.045 0.955 46 H 0.081 0.919 47 H 0.090 0.910 48 H 0.052 0.948 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.370 9.458 -8.286 15.105 hybrid contribution 0.857 -1.235 0.737 1.675 sum -7.513 8.222 -7.549 13.455 Atomic orbital electron populations 1.21718 0.94402 1.01888 1.02163 1.21627 0.96991 0.96632 1.01341 1.21724 0.93471 0.97169 1.02557 1.21749 0.95182 0.95221 0.91044 0.94401 1.21425 0.93131 0.96596 1.00852 1.20716 0.96987 0.91962 1.01918 1.20183 0.98150 0.96049 0.94050 1.21248 1.00820 0.97440 0.95729 1.21443 0.98744 0.93243 1.00431 1.21441 1.00680 1.00782 0.92313 1.21396 0.99089 0.95700 0.98054 1.21218 1.00729 0.94835 0.98794 1.60726 1.04125 1.41835 1.24576 1.19224 0.85919 0.88779 0.95369 0.94994 1.21519 0.98940 1.33918 0.99464 0.93540 1.25541 0.98109 0.95648 0.99236 1.69997 1.12923 1.39846 1.33139 0.85736 0.78382 0.77506 0.81367 1.19601 1.20990 1.21221 1.22117 1.00676 1.01331 0.94351 1.22026 1.01036 1.00312 0.97184 0.92444 0.92598 0.91960 0.92141 0.93114 0.91601 0.90428 0.91324 0.92674 0.91436 0.93377 0.85576 0.83602 0.83480 0.84491 0.87386 0.85456 0.93467 0.95495 0.91926 0.91000 0.94774 0.93620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.91 71.98 0.71 -2.10 16 2 C -0.13 -3.12 4.62 30.60 0.14 -2.98 16 3 C -0.11 -2.90 4.78 30.60 0.15 -2.75 16 4 C 0.08 2.59 1.59 44.92 0.07 2.66 16 5 H 0.04 1.34 5.25 -2.39 -0.01 1.33 16 6 C -0.08 -2.71 4.87 30.60 0.15 -2.56 16 7 C -0.08 -2.99 3.81 29.85 0.11 -2.88 16 8 C -0.08 -2.87 5.13 -19.87 -0.10 -2.97 16 9 C -0.13 -3.88 9.70 22.27 0.22 -3.66 16 10 C -0.12 -2.89 10.05 22.27 0.22 -2.66 16 11 C -0.13 -3.11 10.05 22.27 0.22 -2.89 16 12 C -0.12 -3.34 10.05 22.27 0.22 -3.12 16 13 C -0.14 -4.57 9.70 22.27 0.22 -4.35 16 14 N -0.68 -27.33 5.93 -473.31 -2.81 -30.14 16 15 C 0.22 10.35 1.11 44.17 0.05 10.40 16 16 H 0.03 1.68 4.67 -2.39 -0.01 1.67 16 17 C -0.50 -27.37 8.49 25.60 0.22 -27.16 16 18 H 0.05 2.62 7.81 -2.91 -0.02 2.60 16 19 C 0.01 0.69 5.28 84.66 0.45 1.13 16 20 N -0.92 -52.87 11.29 21.45 0.24 -52.63 16 21 Si 0.94 44.83 29.54 68.60 2.03 46.86 16 22 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 23 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 24 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 25 C -0.14 -6.76 5.20 30.60 0.16 -6.60 16 26 C -0.15 -5.65 8.61 71.98 0.62 -5.03 16 27 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 28 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.06 1.46 7.01 -2.39 -0.02 1.45 16 31 H 0.05 1.40 6.26 -2.39 -0.01 1.38 16 32 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 35 H 0.05 1.91 8.14 -2.38 -0.02 1.90 16 36 H 0.07 3.17 5.81 -2.39 -0.01 3.15 16 37 H 0.05 1.90 7.63 -2.39 -0.02 1.88 16 38 H 0.13 3.28 8.06 -2.91 -0.02 3.26 16 39 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 40 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 41 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 42 H 0.11 3.81 8.06 -2.91 -0.02 3.78 16 43 H 0.33 12.62 6.01 -89.70 -0.54 12.08 16 44 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 45 H 0.03 1.23 7.98 -2.39 -0.02 1.21 16 46 H 0.06 3.39 5.91 -2.39 -0.01 3.37 16 47 H 0.07 2.39 3.21 -2.39 -0.01 2.38 16 48 H 0.03 1.33 8.06 -2.39 -0.02 1.31 16 49 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 Total: -1.00 -60.28 370.36 3.66 -56.62 By element: Atomic # 1 Polarization: 36.43 SS G_CDS: 0.37 Total: 36.80 kcal Atomic # 6 Polarization: -61.35 SS G_CDS: 3.83 Total: -57.52 kcal Atomic # 7 Polarization: -80.20 SS G_CDS: -2.56 Total: -82.77 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -60.28 3.66 -56.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000462065607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.839 kcal (2) G-P(sol) polarization free energy of solvation -60.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds