Wall clock time and date at job start Tue Mar 31 2020 06:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.47687 * 2 1 4 4 C 1.52998 * 109.47330 * 182.39746 * 3 2 1 5 5 H 1.08999 * 109.47203 * 55.73491 * 4 3 2 6 6 C 1.53006 * 109.47032 * 175.73945 * 4 3 2 7 7 C 1.52997 * 109.46985 * 184.99862 * 6 4 3 8 8 C 1.50698 * 109.47031 * 179.97438 * 7 6 4 9 9 C 1.38241 * 120.00246 * 269.72674 * 8 7 6 10 10 C 1.38229 * 120.00209 * 179.76303 * 9 8 7 11 11 C 1.38235 * 119.99969 * 0.51351 * 10 9 8 12 12 C 1.38240 * 119.99747 * 359.74445 * 11 10 9 13 13 C 1.38230 * 120.00196 * 359.97438 * 12 11 10 14 14 N 1.46906 * 109.47169 * 295.73676 * 4 3 2 15 15 C 1.46906 * 110.99928 * 294.64715 * 14 4 3 16 16 C 1.52995 * 109.46911 * 174.56009 * 15 14 4 17 17 C 1.53002 * 109.47009 * 180.02562 * 16 15 14 18 18 C 1.50697 * 109.47264 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99745 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00338 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00080 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 119.99863 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.46998 * 90.00017 * 22 20 18 24 24 H 1.48492 * 109.47355 * 209.99942 * 22 20 18 25 25 H 1.48508 * 109.47017 * 330.00633 * 22 20 18 26 26 H 1.09008 * 109.47303 * 300.00120 * 1 2 3 27 27 H 1.09002 * 109.46992 * 59.99510 * 1 2 3 28 28 H 1.09002 * 109.47849 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47425 * 239.99389 * 2 1 3 30 30 H 1.09002 * 109.46987 * 119.99932 * 2 1 3 31 31 H 1.09000 * 109.46900 * 62.39502 * 3 2 1 32 32 H 1.09002 * 109.47129 * 302.39860 * 3 2 1 33 33 H 1.08999 * 109.46897 * 304.99925 * 6 4 3 34 34 H 1.08996 * 109.47412 * 64.99786 * 6 4 3 35 35 H 1.08999 * 109.47355 * 299.99782 * 7 6 4 36 36 H 1.09009 * 109.46915 * 59.99991 * 7 6 4 37 37 H 1.08004 * 119.99521 * 359.97438 * 9 8 7 38 38 H 1.07996 * 120.00068 * 180.22591 * 10 9 8 39 39 H 1.08001 * 120.00556 * 179.71967 * 11 10 9 40 40 H 1.07995 * 119.99796 * 179.97438 * 12 11 10 41 41 H 1.08003 * 120.00281 * 179.97438 * 13 12 11 42 42 H 1.00893 * 111.00003 * 170.69654 * 14 4 3 43 43 H 1.08993 * 109.46924 * 294.56020 * 15 14 4 44 44 H 1.09002 * 109.46866 * 54.55800 * 15 14 4 45 45 H 1.09006 * 109.46969 * 299.99697 * 16 15 14 46 46 H 1.08992 * 109.47587 * 60.00106 * 16 15 14 47 47 H 1.09000 * 109.47156 * 300.00031 * 17 16 15 48 48 H 1.09002 * 109.46902 * 59.99708 * 17 16 15 49 49 H 0.97008 * 119.99782 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5688 1.4428 -0.0603 5 1 3.8982 0.8762 -0.9313 6 6 4.0747 2.8828 -0.1675 7 6 5.5934 2.8774 -0.3531 8 6 6.0915 4.2957 -0.4592 9 6 6.1801 4.9065 -1.6962 10 6 6.6324 6.2091 -1.7931 11 6 7.0062 6.8974 -0.6541 12 6 6.9227 6.2848 0.5824 13 6 6.4649 4.9842 0.6798 14 7 4.1072 0.8241 1.1585 15 6 3.7897 1.6323 2.3435 16 6 4.2457 0.8923 3.6025 17 6 3.9145 1.7338 4.8367 18 6 4.3630 1.0046 6.0770 19 1 4.8372 0.0379 5.9932 20 6 4.1689 1.5720 7.3185 21 7 4.5607 0.9359 8.4007 22 14 3.3505 3.2450 7.4631 23 1 1.8815 3.0682 7.5891 24 1 3.8693 3.9477 8.6641 25 1 3.6502 4.0491 6.2510 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3635 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8900 31 1 1.7122 1.9437 0.9107 32 1 1.6421 1.9686 -0.8677 33 1 3.6059 3.3699 -1.0225 34 1 3.8220 3.4255 0.7434 35 1 6.0622 2.3903 0.5019 36 1 5.8461 2.3347 -1.2641 37 1 5.8926 4.3670 -2.5866 38 1 6.6981 6.6874 -2.7591 39 1 7.3639 7.9136 -0.7301 40 1 7.2152 6.8224 1.4722 41 1 6.4001 4.5054 1.6458 42 1 5.1017 0.6742 1.0790 43 1 4.3052 2.5905 2.2784 44 1 2.7139 1.8010 2.3906 45 1 3.7301 -0.0659 3.6675 46 1 5.3214 0.7236 3.5554 47 1 4.4296 2.6922 4.7720 48 1 2.8385 1.9021 4.8837 49 1 4.4245 1.3354 9.2742 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000462112020.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:41 Heat of formation + Delta-G solvation = -15.814703 kcal Electronic energy + Delta-G solvation = -22845.991138 eV Core-core repulsion = 19771.127067 eV Total energy + Delta-G solvation = -3074.864070 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.60385 -38.29777 -34.54492 -34.13222 -32.82948 -31.50551 -31.01760 -29.56511 -27.93261 -26.31304 -24.38267 -22.80411 -22.67406 -21.66812 -20.68470 -20.17210 -19.47146 -16.96917 -16.76134 -16.16375 -15.71489 -15.31571 -14.80344 -14.51562 -14.33602 -14.06532 -13.92736 -13.58611 -13.45350 -13.13866 -13.01417 -12.81186 -12.56044 -12.20839 -12.07675 -11.87135 -11.63091 -11.42538 -11.24173 -11.16093 -11.03897 -10.91062 -10.73495 -10.62194 -10.49314 -10.37395 -9.87219 -9.66967 -9.53452 -9.13768 -9.05935 -8.82772 -8.50756 -8.10543 -6.01179 -3.98544 1.21611 1.26341 3.32127 3.39328 3.42897 3.63836 4.36150 4.47646 4.57330 4.67426 4.77962 4.87808 4.96492 4.99587 5.11421 5.14969 5.32528 5.32983 5.35705 5.37143 5.41900 5.48283 5.58461 5.66794 5.71382 5.76689 5.82881 5.89296 5.92167 5.94127 5.97312 6.04571 6.13995 6.18213 6.27669 6.32387 6.38851 6.44076 6.51416 6.52857 6.61420 6.67779 6.87691 6.97241 7.29401 7.40494 7.48580 7.65037 7.84157 8.58685 9.04854 9.61796 11.12501 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.009080 B = 0.004464 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3082.891417 B = 6271.533818 C = 8651.449735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.115 4.115 3 C -0.111 4.111 4 C 0.088 3.912 5 H 0.077 0.923 6 C -0.151 4.151 7 C -0.082 4.082 8 C -0.076 4.076 9 C -0.121 4.121 10 C -0.122 4.122 11 C -0.129 4.129 12 C -0.117 4.117 13 C -0.115 4.115 14 N -0.679 5.679 15 C 0.051 3.949 16 C -0.098 4.098 17 C -0.012 4.012 18 C -0.517 4.517 19 H 0.071 0.929 20 C 0.065 3.935 21 N -0.905 5.905 22 Si 0.879 3.121 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.266 1.266 26 H 0.052 0.948 27 H 0.046 0.954 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.337 0.663 43 H 0.027 0.973 44 H 0.068 0.932 45 H 0.060 0.940 46 H 0.049 0.951 47 H 0.012 0.988 48 H 0.010 0.990 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.043 7.479 -23.473 24.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 C -0.149 4.149 4 C -0.023 4.023 5 H 0.095 0.905 6 C -0.190 4.190 7 C -0.120 4.120 8 C -0.076 4.076 9 C -0.139 4.139 10 C -0.140 4.140 11 C -0.147 4.147 12 C -0.135 4.135 13 C -0.133 4.133 14 N -0.310 5.310 15 C -0.077 4.077 16 C -0.136 4.136 17 C -0.050 4.050 18 C -0.555 4.555 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.544 5.544 22 Si 0.707 3.293 23 H -0.203 1.203 24 H -0.215 1.215 25 H -0.191 1.191 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.140 0.860 41 H 0.142 0.858 42 H 0.155 0.845 43 H 0.045 0.955 44 H 0.087 0.913 45 H 0.079 0.921 46 H 0.068 0.932 47 H 0.030 0.970 48 H 0.028 0.972 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.493 7.058 -23.193 24.248 hybrid contribution 0.227 1.780 0.173 1.803 sum -0.266 8.838 -23.020 24.660 Atomic orbital electron populations 1.21802 0.96752 1.01245 1.01271 1.21397 0.94568 0.96612 1.02706 1.21659 0.94118 0.97518 1.01633 1.21626 0.95156 0.92016 0.93465 0.90530 1.22356 0.94463 0.99356 1.02828 1.20636 0.96066 0.92586 1.02679 1.19923 0.98207 0.96321 0.93173 1.21028 1.00534 0.95230 0.97062 1.21112 0.99625 0.94833 0.98398 1.21135 1.00859 0.99898 0.92810 1.21196 0.99373 0.95200 0.97700 1.21184 0.98850 0.94823 0.98474 1.60652 1.19080 1.49349 1.01870 1.22216 1.00753 0.94582 0.90162 1.21414 1.00100 0.99435 0.92611 1.19534 0.95971 0.95669 0.93837 1.21165 1.39184 1.05853 0.89345 0.91048 1.25035 0.95258 0.97406 0.95847 1.69922 1.47923 1.38642 0.97957 0.86789 0.79961 0.84976 0.77606 1.20311 1.21456 1.19110 0.92855 0.93465 0.93056 0.92804 0.90393 0.91681 0.92457 0.91788 0.90993 0.90880 0.91059 0.86317 0.86330 0.86332 0.86040 0.85809 0.84483 0.95508 0.91347 0.92134 0.93208 0.97005 0.97214 0.92816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.91 37.15 0.37 -1.21 16 2 C -0.12 -1.29 5.79 -26.74 -0.15 -1.44 16 3 C -0.11 -1.23 4.59 -26.73 -0.12 -1.35 16 4 C 0.09 0.95 2.54 -67.71 -0.17 0.77 16 5 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 6 C -0.15 -1.58 4.30 -26.73 -0.12 -1.70 16 7 C -0.08 -0.83 5.12 -27.89 -0.14 -0.97 16 8 C -0.08 -0.84 5.13 -104.62 -0.54 -1.38 16 9 C -0.12 -1.20 9.70 -39.58 -0.38 -1.59 16 10 C -0.12 -1.15 10.05 -39.59 -0.40 -1.55 16 11 C -0.13 -1.26 10.05 -39.58 -0.40 -1.66 16 12 C -0.12 -1.27 10.05 -39.58 -0.40 -1.66 16 13 C -0.12 -1.36 9.70 -39.59 -0.38 -1.75 16 14 N -0.68 -8.78 5.75 -106.72 -0.61 -9.40 16 15 C 0.05 0.80 4.79 -3.82 -0.02 0.79 16 16 C -0.10 -1.92 5.46 -26.73 -0.15 -2.07 16 17 C -0.01 -0.29 4.04 -27.88 -0.11 -0.41 16 18 C -0.52 -14.98 9.66 -34.44 -0.33 -15.31 16 19 H 0.07 2.22 7.99 -52.48 -0.42 1.81 16 20 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 21 N -0.91 -28.31 13.96 55.43 0.77 -27.54 16 22 Si 0.88 22.04 27.47 -169.99 -4.67 17.37 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 26 H 0.05 0.58 8.14 -51.92 -0.42 0.15 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 1.03 7.80 -51.93 -0.40 0.63 16 31 H 0.06 0.81 6.24 -51.93 -0.32 0.49 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.89 6.17 -51.93 -0.32 0.57 16 35 H 0.07 0.79 6.95 -51.93 -0.36 0.43 16 36 H 0.07 0.63 8.08 -51.92 -0.42 0.21 16 37 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 38 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 40 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 41 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 42 H 0.34 4.13 7.59 -39.30 -0.30 3.83 16 43 H 0.03 0.42 6.44 -51.93 -0.33 0.08 16 44 H 0.07 1.10 6.13 -51.93 -0.32 0.79 16 45 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 46 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.01 0.28 7.20 -51.93 -0.37 -0.09 16 48 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 49 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 384.31 15.07 5.79 5.79 Total: -1.00 -30.72 384.31 -11.32 -42.04 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -9.05 Total: 2.39 kcal Atomic # 6 Polarization: -27.11 SS G_CDS: -3.54 Total: -30.65 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: 0.16 Total: -36.93 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.37 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.72 -11.32 -42.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000462112020.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.225 kcal (2) G-P(sol) polarization free energy of solvation -30.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds