Wall clock time and date at job start Tue Mar 31 2020 06:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.47687 * 2 1 4 4 C 1.52998 * 109.47330 * 182.39746 * 3 2 1 5 5 H 1.08999 * 109.47203 * 55.73491 * 4 3 2 6 6 C 1.53006 * 109.47032 * 175.73945 * 4 3 2 7 7 C 1.52997 * 109.46985 * 184.99862 * 6 4 3 8 8 C 1.50698 * 109.47031 * 179.97438 * 7 6 4 9 9 C 1.38241 * 120.00246 * 269.72674 * 8 7 6 10 10 C 1.38229 * 120.00209 * 179.76303 * 9 8 7 11 11 C 1.38235 * 119.99969 * 0.51351 * 10 9 8 12 12 C 1.38240 * 119.99747 * 359.74445 * 11 10 9 13 13 C 1.38230 * 120.00196 * 359.97438 * 12 11 10 14 14 N 1.46906 * 109.47169 * 295.73676 * 4 3 2 15 15 C 1.46906 * 110.99928 * 294.64715 * 14 4 3 16 16 C 1.52995 * 109.46911 * 174.56009 * 15 14 4 17 17 C 1.53002 * 109.47009 * 180.02562 * 16 15 14 18 18 C 1.50697 * 109.47264 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99745 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00338 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00080 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 119.99863 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.46998 * 90.00017 * 22 20 18 24 24 H 1.48492 * 109.47355 * 209.99942 * 22 20 18 25 25 H 1.48508 * 109.47017 * 330.00633 * 22 20 18 26 26 H 1.09008 * 109.47303 * 300.00120 * 1 2 3 27 27 H 1.09002 * 109.46992 * 59.99510 * 1 2 3 28 28 H 1.09002 * 109.47849 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47425 * 239.99389 * 2 1 3 30 30 H 1.09002 * 109.46987 * 119.99932 * 2 1 3 31 31 H 1.09000 * 109.46900 * 62.39502 * 3 2 1 32 32 H 1.09002 * 109.47129 * 302.39860 * 3 2 1 33 33 H 1.08999 * 109.46897 * 304.99925 * 6 4 3 34 34 H 1.08996 * 109.47412 * 64.99786 * 6 4 3 35 35 H 1.08999 * 109.47355 * 299.99782 * 7 6 4 36 36 H 1.09009 * 109.46915 * 59.99991 * 7 6 4 37 37 H 1.08004 * 119.99521 * 359.97438 * 9 8 7 38 38 H 1.07996 * 120.00068 * 180.22591 * 10 9 8 39 39 H 1.08001 * 120.00556 * 179.71967 * 11 10 9 40 40 H 1.07995 * 119.99796 * 179.97438 * 12 11 10 41 41 H 1.08003 * 120.00281 * 179.97438 * 13 12 11 42 42 H 1.00893 * 111.00003 * 170.69654 * 14 4 3 43 43 H 1.08993 * 109.46924 * 294.56020 * 15 14 4 44 44 H 1.09002 * 109.46866 * 54.55800 * 15 14 4 45 45 H 1.09006 * 109.46969 * 299.99697 * 16 15 14 46 46 H 1.08992 * 109.47587 * 60.00106 * 16 15 14 47 47 H 1.09000 * 109.47156 * 300.00031 * 17 16 15 48 48 H 1.09002 * 109.46902 * 59.99708 * 17 16 15 49 49 H 0.97008 * 119.99782 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5688 1.4428 -0.0603 5 1 3.8982 0.8762 -0.9313 6 6 4.0747 2.8828 -0.1675 7 6 5.5934 2.8774 -0.3531 8 6 6.0915 4.2957 -0.4592 9 6 6.1801 4.9065 -1.6962 10 6 6.6324 6.2091 -1.7931 11 6 7.0062 6.8974 -0.6541 12 6 6.9227 6.2848 0.5824 13 6 6.4649 4.9842 0.6798 14 7 4.1072 0.8241 1.1585 15 6 3.7897 1.6323 2.3435 16 6 4.2457 0.8923 3.6025 17 6 3.9145 1.7338 4.8367 18 6 4.3630 1.0046 6.0770 19 1 4.8372 0.0379 5.9932 20 6 4.1689 1.5720 7.3185 21 7 4.5607 0.9359 8.4007 22 14 3.3505 3.2450 7.4631 23 1 1.8815 3.0682 7.5891 24 1 3.8693 3.9477 8.6641 25 1 3.6502 4.0491 6.2510 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3635 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8900 31 1 1.7122 1.9437 0.9107 32 1 1.6421 1.9686 -0.8677 33 1 3.6059 3.3699 -1.0225 34 1 3.8220 3.4255 0.7434 35 1 6.0622 2.3903 0.5019 36 1 5.8461 2.3347 -1.2641 37 1 5.8926 4.3670 -2.5866 38 1 6.6981 6.6874 -2.7591 39 1 7.3639 7.9136 -0.7301 40 1 7.2152 6.8224 1.4722 41 1 6.4001 4.5054 1.6458 42 1 5.1017 0.6742 1.0790 43 1 4.3052 2.5905 2.2784 44 1 2.7139 1.8010 2.3906 45 1 3.7301 -0.0659 3.6675 46 1 5.3214 0.7236 3.5554 47 1 4.4296 2.6922 4.7720 48 1 2.8385 1.9021 4.8837 49 1 4.4245 1.3354 9.2742 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000462112020.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:40 Heat of formation + Delta-G solvation = -31.206467 kcal Electronic energy + Delta-G solvation = -22846.658574 eV Core-core repulsion = 19771.127067 eV Total energy + Delta-G solvation = -3075.531507 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.40289 -39.25428 -36.16320 -34.99480 -34.45504 -33.00918 -31.76934 -30.77858 -28.86206 -27.89399 -25.22160 -24.40646 -23.46436 -22.48764 -21.97604 -21.48757 -20.47844 -18.90466 -17.70353 -17.29597 -16.66428 -16.36563 -16.08782 -15.81869 -15.44336 -15.23965 -14.98739 -14.75499 -14.55854 -14.27089 -13.96503 -13.92085 -13.77633 -13.58776 -13.26999 -12.98330 -12.74136 -12.71405 -12.62131 -12.30758 -12.04084 -11.93886 -11.83905 -11.67609 -11.61610 -11.50099 -11.42538 -11.28887 -11.23968 -11.18621 -10.77054 -9.83151 -9.61646 -9.15660 -8.30157 -6.34005 0.45139 0.49038 1.33900 1.35532 1.47675 2.34988 2.86906 3.05093 3.33057 3.72359 3.91350 3.95649 4.15509 4.17164 4.22718 4.24762 4.29856 4.33093 4.43051 4.50106 4.54695 4.61185 4.65847 4.71458 4.74027 4.78157 4.85464 4.92964 4.93553 4.96701 5.07875 5.10373 5.15785 5.17046 5.17874 5.25149 5.33924 5.36393 5.53374 5.54903 5.58009 5.62527 5.63199 5.65094 5.67582 5.74426 6.13275 6.21560 6.31289 6.60596 6.74373 7.30550 8.86990 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.009080 B = 0.004464 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3082.891417 B = 6271.533818 C = 8651.449735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.113 4.113 3 C -0.110 4.110 4 C 0.092 3.908 5 H 0.095 0.905 6 C -0.141 4.141 7 C -0.078 4.078 8 C -0.087 4.087 9 C -0.126 4.126 10 C -0.124 4.124 11 C -0.135 4.135 12 C -0.132 4.132 13 C -0.140 4.140 14 N -0.682 5.682 15 C 0.070 3.930 16 C -0.088 4.088 17 C -0.008 4.008 18 C -0.532 4.532 19 H 0.030 0.970 20 C 0.003 3.997 21 N -0.952 5.952 22 Si 0.951 3.049 23 H -0.266 1.266 24 H -0.282 1.282 25 H -0.248 1.248 26 H 0.042 0.958 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.051 0.949 35 H 0.060 0.940 36 H 0.088 0.912 37 H 0.139 0.861 38 H 0.144 0.856 39 H 0.139 0.861 40 H 0.128 0.872 41 H 0.110 0.890 42 H 0.342 0.658 43 H 0.030 0.970 44 H 0.066 0.934 45 H 0.046 0.954 46 H 0.044 0.956 47 H 0.016 0.984 48 H 0.015 0.985 49 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.745 9.401 -26.389 28.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.148 4.148 4 C -0.018 4.018 5 H 0.113 0.887 6 C -0.180 4.180 7 C -0.115 4.115 8 C -0.087 4.087 9 C -0.144 4.144 10 C -0.142 4.142 11 C -0.153 4.153 12 C -0.150 4.150 13 C -0.158 4.158 14 N -0.313 5.313 15 C -0.059 4.059 16 C -0.127 4.127 17 C -0.046 4.046 18 C -0.570 4.570 19 H 0.048 0.952 20 C -0.193 4.193 21 N -0.593 5.593 22 Si 0.774 3.226 23 H -0.191 1.191 24 H -0.208 1.208 25 H -0.171 1.171 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.107 0.893 37 H 0.157 0.843 38 H 0.162 0.838 39 H 0.157 0.843 40 H 0.146 0.854 41 H 0.128 0.872 42 H 0.161 0.839 43 H 0.048 0.952 44 H 0.085 0.915 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.035 0.965 48 H 0.033 0.967 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.277 8.971 -26.133 27.660 hybrid contribution 0.530 1.095 1.058 1.612 sum -0.748 10.066 -25.075 27.030 Atomic orbital electron populations 1.21790 0.96126 1.01560 1.01472 1.21352 0.95157 0.96575 1.01954 1.21661 0.94188 0.97344 1.01596 1.21686 0.94996 0.92377 0.92704 0.88677 1.22243 0.94814 0.98698 1.02281 1.20599 0.95556 0.92356 1.02976 1.20060 0.98522 0.96705 0.93427 1.21313 1.00148 0.95670 0.97240 1.21482 0.98542 0.94740 0.99418 1.21442 1.00464 1.00925 0.92460 1.21394 0.99691 0.95109 0.98760 1.21250 1.00458 0.95650 0.98439 1.60569 1.19645 1.49126 1.01924 1.21867 1.00402 0.94232 0.89438 1.21239 0.99668 0.98551 0.93196 1.19471 0.95976 0.95798 0.93385 1.21525 1.38894 1.04822 0.91801 0.95212 1.26032 0.95939 1.02072 0.95267 1.70077 1.49555 1.40951 0.98752 0.85650 0.79115 0.79442 0.78398 1.19086 1.20820 1.17130 0.93874 0.92005 0.92748 0.91675 0.92952 0.93404 0.90598 0.90562 0.93071 0.92098 0.89326 0.84290 0.83794 0.84270 0.85442 0.87191 0.83912 0.95194 0.91542 0.93560 0.93738 0.96519 0.96661 0.92501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.91 71.98 0.71 -2.18 16 2 C -0.11 -2.34 5.79 30.59 0.18 -2.16 16 3 C -0.11 -2.20 4.59 30.59 0.14 -2.06 16 4 C 0.09 1.79 2.54 44.92 0.11 1.90 16 5 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 6 C -0.14 -2.68 4.30 30.60 0.13 -2.55 16 7 C -0.08 -1.43 5.12 29.85 0.15 -1.28 16 8 C -0.09 -1.80 5.13 -19.87 -0.10 -1.90 16 9 C -0.13 -2.19 9.70 22.27 0.22 -1.98 16 10 C -0.12 -2.01 10.05 22.27 0.22 -1.79 16 11 C -0.14 -2.38 10.05 22.27 0.22 -2.16 16 12 C -0.13 -2.77 10.05 22.27 0.22 -2.54 16 13 C -0.14 -3.28 9.70 22.27 0.22 -3.06 16 14 N -0.68 -16.96 5.75 -491.55 -2.83 -19.79 16 15 C 0.07 2.15 4.79 86.30 0.41 2.56 16 16 C -0.09 -3.54 5.46 30.59 0.17 -3.38 16 17 C -0.01 -0.40 4.04 29.85 0.12 -0.28 16 18 C -0.53 -31.80 9.66 25.60 0.25 -31.55 16 19 H 0.03 1.95 7.99 -2.91 -0.02 1.93 16 20 C 0.00 0.20 5.47 84.65 0.46 0.66 16 21 N -0.95 -61.21 13.96 21.45 0.30 -60.91 16 22 Si 0.95 45.36 27.47 68.60 1.88 47.25 16 23 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 24 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 25 H -0.25 -10.99 6.54 99.48 0.65 -10.34 16 26 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 27 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.05 1.36 7.80 -2.39 -0.02 1.34 16 31 H 0.05 1.13 6.24 -2.39 -0.01 1.12 16 32 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.05 1.20 6.17 -2.39 -0.01 1.19 16 35 H 0.06 1.27 6.95 -2.39 -0.02 1.25 16 36 H 0.09 1.32 8.08 -2.38 -0.02 1.30 16 37 H 0.14 1.79 8.06 -2.91 -0.02 1.76 16 38 H 0.14 1.55 8.06 -2.91 -0.02 1.52 16 39 H 0.14 1.79 8.06 -2.91 -0.02 1.76 16 40 H 0.13 2.37 8.06 -2.91 -0.02 2.34 16 41 H 0.11 2.76 8.06 -2.91 -0.02 2.74 16 42 H 0.34 8.04 7.59 -89.70 -0.68 7.36 16 43 H 0.03 0.92 6.44 -2.39 -0.02 0.90 16 44 H 0.07 2.10 6.13 -2.39 -0.01 2.09 16 45 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 46 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 47 H 0.02 0.78 7.20 -2.39 -0.02 0.77 16 48 H 0.02 0.71 7.57 -2.39 -0.02 0.69 16 49 H 0.27 15.89 8.31 -92.70 -0.77 15.12 16 Total: -1.00 -67.83 384.31 3.35 -64.49 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: 0.15 Total: 22.70 kcal Atomic # 6 Polarization: -57.58 SS G_CDS: 3.84 Total: -53.74 kcal Atomic # 7 Polarization: -78.18 SS G_CDS: -2.53 Total: -80.70 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.88 Total: 47.25 kcal Total: -67.83 3.35 -64.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000462112020.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.279 kcal (2) G-P(sol) polarization free energy of solvation -67.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds