Wall clock time and date at job start Tue Mar 31 2020 06:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46902 * 2 1 4 4 C 1.53001 * 109.46767 * 185.63948 * 3 2 1 5 5 H 1.08994 * 109.47372 * 54.29141 * 4 3 2 6 6 C 1.52999 * 109.47111 * 294.29060 * 4 3 2 7 7 C 1.52995 * 109.46961 * 175.00344 * 6 4 3 8 8 C 1.50705 * 109.47156 * 179.97438 * 7 6 4 9 9 C 1.38236 * 119.99808 * 269.72392 * 8 7 6 10 10 C 1.38239 * 119.99402 * 179.76200 * 9 8 7 11 11 C 1.38229 * 120.00036 * 0.51618 * 10 9 8 12 12 C 1.38236 * 120.00465 * 359.74071 * 11 10 9 13 13 C 1.38229 * 119.99773 * 90.00210 * 8 7 6 14 14 N 1.46900 * 109.46758 * 174.29268 * 4 3 2 15 15 C 1.46900 * 111.00097 * 277.12962 * 14 4 3 16 16 C 1.53001 * 109.47448 * 175.49140 * 15 14 4 17 17 C 1.53001 * 109.47333 * 179.97438 * 16 15 14 18 18 C 1.50699 * 109.47124 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99640 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99931 * 180.02562 * 18 17 16 21 21 N 1.31513 * 119.99740 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00014 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47139 * 89.99993 * 22 20 18 24 24 H 1.48493 * 109.47167 * 209.99870 * 22 20 18 25 25 H 1.48507 * 109.47034 * 330.00077 * 22 20 18 26 26 H 1.08999 * 109.47157 * 59.99831 * 1 2 3 27 27 H 1.09004 * 109.46733 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47126 * 299.99638 * 1 2 3 29 29 H 1.09005 * 109.47162 * 240.00421 * 2 1 3 30 30 H 1.08995 * 109.47448 * 120.00581 * 2 1 3 31 31 H 1.09002 * 109.46965 * 65.64034 * 3 2 1 32 32 H 1.08994 * 109.47081 * 305.64027 * 3 2 1 33 33 H 1.08996 * 109.47146 * 55.00494 * 6 4 3 34 34 H 1.09001 * 109.47071 * 295.00050 * 6 4 3 35 35 H 1.08998 * 109.47685 * 299.99940 * 7 6 4 36 36 H 1.09006 * 109.47508 * 60.00391 * 7 6 4 37 37 H 1.08001 * 120.00422 * 0.02562 * 9 8 7 38 38 H 1.08002 * 119.99860 * 180.23046 * 10 9 8 39 39 H 1.08003 * 119.99921 * 179.72101 * 11 10 9 40 40 H 1.07990 * 120.00073 * 179.97438 * 12 11 10 41 41 H 1.07999 * 120.00003 * 359.97438 * 13 8 7 42 42 H 1.00900 * 111.00441 * 41.08409 * 14 4 3 43 43 H 1.09000 * 109.47191 * 295.49308 * 15 14 4 44 44 H 1.09006 * 109.47159 * 55.49201 * 15 14 4 45 45 H 1.09000 * 109.47062 * 300.00247 * 16 15 14 46 46 H 1.09006 * 109.46891 * 59.99897 * 16 15 14 47 47 H 1.09002 * 109.47150 * 300.00711 * 17 16 15 48 48 H 1.08997 * 109.46870 * 60.00062 * 17 16 15 49 49 H 0.97003 * 119.99607 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5634 1.4448 -0.1418 5 1 3.8470 0.8733 -1.0254 6 6 4.1921 0.8095 1.1000 7 6 5.7055 0.6982 0.9051 8 6 6.3249 0.0729 2.1285 9 6 6.7562 0.8727 3.1703 10 6 7.3199 0.2987 4.2945 11 6 7.4619 -1.0740 4.3723 12 6 7.0354 -1.8734 3.3283 13 6 6.4669 -1.2998 2.2063 14 7 4.0403 2.8275 -0.2790 15 6 3.9253 3.2885 -1.6691 16 6 4.3239 4.7633 -1.7521 17 6 4.2048 5.2432 -3.1999 18 6 4.5980 6.6957 -3.2817 19 1 4.9021 7.2238 -2.3900 20 6 4.5686 7.3506 -4.4946 21 7 4.1978 6.7076 -5.5803 22 14 5.0554 9.1512 -4.5959 23 1 6.5137 9.2559 -4.8561 24 1 4.3075 9.8049 -5.6997 25 1 4.7321 9.8243 -3.3122 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.7614 1.9264 0.9362 32 1 1.5965 1.9847 -0.8351 33 1 3.7714 -0.1844 1.2521 34 1 3.9826 1.4301 1.9713 35 1 5.9151 0.0777 0.0339 36 1 6.1264 1.6922 0.7530 37 1 6.6490 1.9455 3.1077 38 1 7.6535 0.9232 5.1100 39 1 7.9064 -1.5221 5.2487 40 1 7.1468 -2.9459 3.3890 41 1 6.1337 -1.9243 1.3906 42 1 3.5465 3.4443 0.3485 43 1 4.5855 2.6974 -2.3037 44 1 2.8956 3.1709 -2.0069 45 1 3.6637 5.3544 -1.1174 46 1 5.3536 4.8809 -1.4143 47 1 4.8653 4.6520 -3.8342 48 1 3.1753 5.1256 -3.5381 49 1 4.1768 7.1685 -6.4336 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000462112021.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:44 Heat of formation + Delta-G solvation = -24.473484 kcal Electronic energy + Delta-G solvation = -22188.238657 eV Core-core repulsion = 19112.999114 eV Total energy + Delta-G solvation = -3075.239543 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.46437 -38.05290 -34.85765 -33.93878 -33.05923 -31.38189 -30.99210 -29.50838 -27.72620 -25.84112 -24.17091 -22.67599 -22.52256 -21.73588 -20.94227 -20.65697 -19.76839 -16.86491 -16.31193 -15.59402 -15.37089 -15.34550 -15.08212 -14.79751 -14.38210 -14.13595 -13.97005 -13.54727 -13.24382 -13.18426 -12.93896 -12.58459 -12.38487 -12.26933 -11.88903 -11.64321 -11.59845 -11.39866 -11.36958 -11.08052 -11.06996 -10.87920 -10.71619 -10.61397 -10.55449 -10.53047 -10.32526 -9.67330 -9.29890 -9.03756 -9.02369 -8.77483 -8.32324 -8.03975 -5.97578 -3.99503 1.26201 1.28579 3.33663 3.39619 3.43193 3.67874 4.40119 4.51141 4.60674 4.75831 4.77855 4.85403 4.89807 5.00115 5.06698 5.14176 5.28596 5.38173 5.38831 5.39747 5.47140 5.54871 5.65060 5.67286 5.70458 5.79409 5.84675 5.87588 5.91422 5.94431 5.98609 6.06231 6.11756 6.21077 6.27110 6.35757 6.37103 6.38533 6.39535 6.63614 6.75933 6.82842 6.91709 7.16448 7.41272 7.69305 7.71666 7.86539 8.03164 8.46517 9.07827 9.64370 11.13895 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.013351 B = 0.002831 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.695936 B = 9888.876020 C =11543.300366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.151 4.151 4 C 0.085 3.915 5 H 0.076 0.924 6 C -0.097 4.097 7 C -0.077 4.077 8 C -0.073 4.073 9 C -0.117 4.117 10 C -0.120 4.120 11 C -0.133 4.133 12 C -0.121 4.121 13 C -0.122 4.122 14 N -0.684 5.684 15 C 0.059 3.941 16 C -0.108 4.108 17 C 0.022 3.978 18 C -0.518 4.518 19 H 0.055 0.945 20 C 0.055 3.945 21 N -0.897 5.897 22 Si 0.892 3.108 23 H -0.280 1.280 24 H -0.287 1.287 25 H -0.274 1.274 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.089 0.911 37 H 0.123 0.877 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.337 0.663 43 H 0.065 0.935 44 H 0.024 0.976 45 H 0.043 0.957 46 H 0.055 0.945 47 H 0.015 0.985 48 H 0.013 0.987 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.169 -18.294 17.984 25.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.190 4.190 4 C -0.025 4.025 5 H 0.094 0.906 6 C -0.135 4.135 7 C -0.115 4.115 8 C -0.073 4.073 9 C -0.135 4.135 10 C -0.138 4.138 11 C -0.151 4.151 12 C -0.139 4.139 13 C -0.140 4.140 14 N -0.313 5.313 15 C -0.069 4.069 16 C -0.146 4.146 17 C -0.015 4.015 18 C -0.556 4.556 19 H 0.073 0.927 20 C -0.146 4.146 21 N -0.536 5.536 22 Si 0.720 3.280 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.199 1.199 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.107 0.893 37 H 0.141 0.859 38 H 0.137 0.863 39 H 0.135 0.865 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.154 0.846 43 H 0.084 0.916 44 H 0.042 0.958 45 H 0.062 0.938 46 H 0.074 0.926 47 H 0.034 0.966 48 H 0.031 0.969 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.477 -18.440 17.720 25.578 hybrid contribution -0.745 1.103 -0.244 1.353 sum -0.268 -17.337 17.476 24.618 Atomic orbital electron populations 1.21789 0.96154 1.01310 1.01810 1.21519 0.95624 0.96838 1.01913 1.22360 0.97273 0.97220 1.02149 1.21654 0.91447 0.91119 0.98311 0.90609 1.21558 0.94254 0.99996 0.97683 1.20584 0.95224 1.01905 0.93748 1.20122 0.97343 0.93463 0.96360 1.21150 0.98759 1.00070 0.93474 1.21158 0.99541 0.95025 0.98078 1.21097 1.01118 0.93992 0.98852 1.21119 0.99144 0.99587 0.94087 1.21084 1.00100 0.94594 0.98209 1.60708 1.60635 1.02117 1.07866 1.22136 0.98810 0.98029 0.87957 1.21633 1.00442 0.91798 1.00701 1.19055 0.96953 0.95776 0.89728 1.21264 1.44596 0.96061 0.93728 0.92708 1.25033 0.95461 0.98174 0.95890 1.69969 1.48262 1.36483 0.98920 0.86601 0.78547 0.85260 0.77641 1.20652 1.21271 1.19898 0.92739 0.93004 0.92920 0.92084 0.91909 0.91994 0.91726 0.91976 0.92048 0.91584 0.89260 0.85873 0.86326 0.86519 0.86441 0.86303 0.84583 0.91627 0.95774 0.93777 0.92627 0.96622 0.96886 0.93061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 37.16 0.37 -0.99 16 2 C -0.12 -1.13 5.57 -26.73 -0.15 -1.28 16 3 C -0.15 -1.62 4.68 -26.73 -0.12 -1.74 16 4 C 0.09 0.98 2.04 -67.71 -0.14 0.84 16 5 H 0.08 0.93 7.89 -51.93 -0.41 0.52 16 6 C -0.10 -0.99 4.75 -26.73 -0.13 -1.12 16 7 C -0.08 -0.84 5.23 -27.88 -0.15 -0.98 16 8 C -0.07 -0.78 5.13 -104.62 -0.54 -1.31 16 9 C -0.12 -1.22 9.70 -39.58 -0.38 -1.61 16 10 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 11 C -0.13 -1.19 10.05 -39.59 -0.40 -1.59 16 12 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 13 C -0.12 -1.20 9.70 -39.58 -0.38 -1.59 16 14 N -0.68 -9.42 5.73 -106.72 -0.61 -10.03 16 15 C 0.06 1.01 5.49 -3.82 -0.02 0.98 16 16 C -0.11 -2.23 5.37 -26.73 -0.14 -2.37 16 17 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 18 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 19 H 0.05 1.53 7.74 -52.48 -0.41 1.13 16 20 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 21 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 22 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.55 6.75 -51.93 -0.35 0.20 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.79 7.14 -51.93 -0.37 0.42 16 33 H 0.06 0.59 6.49 -51.93 -0.34 0.25 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 36 H 0.09 1.10 7.69 -51.93 -0.40 0.71 16 37 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 38 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 40 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 41 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 42 H 0.34 4.49 8.45 -39.29 -0.33 4.15 16 43 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.02 0.42 7.13 -51.93 -0.37 0.05 16 45 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 392.66 15.07 5.92 5.92 Total: -1.00 -30.13 392.66 -11.80 -41.93 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -9.30 Total: 0.88 kcal Atomic # 6 Polarization: -25.51 SS G_CDS: -3.53 Total: -29.03 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: 0.13 Total: -36.60 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.13 -11.80 -41.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000462112021.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.458 kcal (2) G-P(sol) polarization free energy of solvation -30.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds