Wall clock time and date at job start Tue Mar 31 2020 06:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46902 * 2 1 4 4 C 1.53001 * 109.46767 * 185.63948 * 3 2 1 5 5 H 1.08994 * 109.47372 * 54.29141 * 4 3 2 6 6 C 1.52999 * 109.47111 * 294.29060 * 4 3 2 7 7 C 1.52995 * 109.46961 * 175.00344 * 6 4 3 8 8 C 1.50705 * 109.47156 * 179.97438 * 7 6 4 9 9 C 1.38236 * 119.99808 * 269.72392 * 8 7 6 10 10 C 1.38239 * 119.99402 * 179.76200 * 9 8 7 11 11 C 1.38229 * 120.00036 * 0.51618 * 10 9 8 12 12 C 1.38236 * 120.00465 * 359.74071 * 11 10 9 13 13 C 1.38229 * 119.99773 * 90.00210 * 8 7 6 14 14 N 1.46900 * 109.46758 * 174.29268 * 4 3 2 15 15 C 1.46900 * 111.00097 * 277.12962 * 14 4 3 16 16 C 1.53001 * 109.47448 * 175.49140 * 15 14 4 17 17 C 1.53001 * 109.47333 * 179.97438 * 16 15 14 18 18 C 1.50699 * 109.47124 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99640 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99931 * 180.02562 * 18 17 16 21 21 N 1.31513 * 119.99740 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00014 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47139 * 89.99993 * 22 20 18 24 24 H 1.48493 * 109.47167 * 209.99870 * 22 20 18 25 25 H 1.48507 * 109.47034 * 330.00077 * 22 20 18 26 26 H 1.08999 * 109.47157 * 59.99831 * 1 2 3 27 27 H 1.09004 * 109.46733 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47126 * 299.99638 * 1 2 3 29 29 H 1.09005 * 109.47162 * 240.00421 * 2 1 3 30 30 H 1.08995 * 109.47448 * 120.00581 * 2 1 3 31 31 H 1.09002 * 109.46965 * 65.64034 * 3 2 1 32 32 H 1.08994 * 109.47081 * 305.64027 * 3 2 1 33 33 H 1.08996 * 109.47146 * 55.00494 * 6 4 3 34 34 H 1.09001 * 109.47071 * 295.00050 * 6 4 3 35 35 H 1.08998 * 109.47685 * 299.99940 * 7 6 4 36 36 H 1.09006 * 109.47508 * 60.00391 * 7 6 4 37 37 H 1.08001 * 120.00422 * 0.02562 * 9 8 7 38 38 H 1.08002 * 119.99860 * 180.23046 * 10 9 8 39 39 H 1.08003 * 119.99921 * 179.72101 * 11 10 9 40 40 H 1.07990 * 120.00073 * 179.97438 * 12 11 10 41 41 H 1.07999 * 120.00003 * 359.97438 * 13 8 7 42 42 H 1.00900 * 111.00441 * 41.08409 * 14 4 3 43 43 H 1.09000 * 109.47191 * 295.49308 * 15 14 4 44 44 H 1.09006 * 109.47159 * 55.49201 * 15 14 4 45 45 H 1.09000 * 109.47062 * 300.00247 * 16 15 14 46 46 H 1.09006 * 109.46891 * 59.99897 * 16 15 14 47 47 H 1.09002 * 109.47150 * 300.00711 * 17 16 15 48 48 H 1.08997 * 109.46870 * 60.00062 * 17 16 15 49 49 H 0.97003 * 119.99607 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5634 1.4448 -0.1418 5 1 3.8470 0.8733 -1.0254 6 6 4.1921 0.8095 1.1000 7 6 5.7055 0.6982 0.9051 8 6 6.3249 0.0729 2.1285 9 6 6.7562 0.8727 3.1703 10 6 7.3199 0.2987 4.2945 11 6 7.4619 -1.0740 4.3723 12 6 7.0354 -1.8734 3.3283 13 6 6.4669 -1.2998 2.2063 14 7 4.0403 2.8275 -0.2790 15 6 3.9253 3.2885 -1.6691 16 6 4.3239 4.7633 -1.7521 17 6 4.2048 5.2432 -3.1999 18 6 4.5980 6.6957 -3.2817 19 1 4.9021 7.2238 -2.3900 20 6 4.5686 7.3506 -4.4946 21 7 4.1978 6.7076 -5.5803 22 14 5.0554 9.1512 -4.5959 23 1 6.5137 9.2559 -4.8561 24 1 4.3075 9.8049 -5.6997 25 1 4.7321 9.8243 -3.3122 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.7614 1.9264 0.9362 32 1 1.5965 1.9847 -0.8351 33 1 3.7714 -0.1844 1.2521 34 1 3.9826 1.4301 1.9713 35 1 5.9151 0.0777 0.0339 36 1 6.1264 1.6922 0.7530 37 1 6.6490 1.9455 3.1077 38 1 7.6535 0.9232 5.1100 39 1 7.9064 -1.5221 5.2487 40 1 7.1468 -2.9459 3.3890 41 1 6.1337 -1.9243 1.3906 42 1 3.5465 3.4443 0.3485 43 1 4.5855 2.6974 -2.3037 44 1 2.8956 3.1709 -2.0069 45 1 3.6637 5.3544 -1.1174 46 1 5.3536 4.8809 -1.4143 47 1 4.8653 4.6520 -3.8342 48 1 3.1753 5.1256 -3.5381 49 1 4.1768 7.1685 -6.4336 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000462112021.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:44 Heat of formation + Delta-G solvation = -38.343016 kcal Electronic energy + Delta-G solvation = -22188.840085 eV Core-core repulsion = 19112.999114 eV Total energy + Delta-G solvation = -3075.840971 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.21743 -39.06230 -36.40762 -34.85817 -34.66285 -32.88225 -31.69343 -30.73383 -28.69494 -27.53161 -25.16250 -24.13672 -23.37495 -22.66290 -22.08523 -21.70880 -21.05902 -18.49116 -17.55653 -16.65905 -16.52073 -16.39020 -16.18461 -15.99017 -15.67107 -15.39076 -14.92747 -14.46114 -14.24953 -14.10883 -13.96222 -13.89167 -13.59020 -13.53330 -13.21940 -13.03433 -12.79405 -12.56222 -12.46946 -12.29117 -12.27128 -12.15188 -11.95297 -11.83522 -11.65200 -11.49199 -11.45228 -11.41760 -11.26460 -10.96656 -10.55823 -9.75428 -9.54277 -9.18050 -8.20608 -6.31644 0.53552 0.56653 1.39423 1.41054 1.52154 2.40601 2.95337 3.12437 3.28764 3.75322 3.93534 4.04045 4.09325 4.21576 4.22145 4.26511 4.35092 4.35800 4.40999 4.49158 4.57133 4.62974 4.72215 4.74990 4.78766 4.82587 4.88182 4.90564 5.00676 5.02616 5.06137 5.13294 5.20529 5.23810 5.24741 5.27726 5.34124 5.38441 5.46215 5.50251 5.52608 5.65778 5.69053 5.75773 5.85800 5.86554 6.14979 6.21222 6.28471 6.55987 6.85533 7.37598 8.91388 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.013351 B = 0.002831 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.695936 B = 9888.876020 C =11543.300366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.145 4.145 4 C 0.088 3.912 5 H 0.069 0.931 6 C -0.086 4.086 7 C -0.071 4.071 8 C -0.087 4.087 9 C -0.134 4.134 10 C -0.128 4.128 11 C -0.137 4.137 12 C -0.126 4.126 13 C -0.132 4.132 14 N -0.681 5.681 15 C 0.075 3.925 16 C -0.092 4.092 17 C 0.026 3.974 18 C -0.543 4.543 19 H 0.059 0.941 20 C -0.002 4.002 21 N -0.934 5.934 22 Si 0.966 3.034 23 H -0.272 1.272 24 H -0.281 1.281 25 H -0.263 1.263 26 H 0.044 0.956 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.046 0.954 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.121 0.879 38 H 0.135 0.865 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.130 0.870 42 H 0.342 0.658 43 H 0.057 0.943 44 H 0.020 0.980 45 H 0.049 0.951 46 H 0.052 0.948 47 H -0.010 1.010 48 H -0.011 1.011 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.068 -18.810 19.788 27.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.185 4.185 4 C -0.022 4.022 5 H 0.087 0.913 6 C -0.123 4.123 7 C -0.109 4.109 8 C -0.087 4.087 9 C -0.152 4.152 10 C -0.146 4.146 11 C -0.155 4.155 12 C -0.144 4.144 13 C -0.150 4.150 14 N -0.311 5.311 15 C -0.054 4.054 16 C -0.130 4.130 17 C -0.012 4.012 18 C -0.581 4.581 19 H 0.077 0.923 20 C -0.200 4.200 21 N -0.575 5.575 22 Si 0.790 3.210 23 H -0.197 1.197 24 H -0.207 1.207 25 H -0.187 1.187 26 H 0.063 0.937 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.139 0.861 38 H 0.153 0.847 39 H 0.157 0.843 40 H 0.157 0.843 41 H 0.148 0.852 42 H 0.160 0.840 43 H 0.076 0.924 44 H 0.039 0.961 45 H 0.068 0.932 46 H 0.071 0.929 47 H 0.008 0.992 48 H 0.008 0.992 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.712 -18.967 19.545 27.245 hybrid contribution -0.807 1.206 -0.787 1.650 sum -0.094 -17.761 18.759 25.833 Atomic orbital electron populations 1.21786 0.95730 1.02000 1.01533 1.21500 0.95984 0.95692 1.02401 1.22285 0.96317 0.98221 1.01631 1.21683 0.92214 0.89475 0.98812 0.91322 1.21460 0.93796 1.00462 0.96630 1.20478 0.95518 1.00796 0.94085 1.20149 0.98178 0.94060 0.96293 1.21279 0.99586 1.00183 0.94140 1.21420 0.99246 0.95757 0.98184 1.21435 1.00622 0.93850 0.99612 1.21438 0.98422 1.00857 0.93687 1.21288 1.00307 0.94378 0.99024 1.60640 1.61212 1.03413 1.05828 1.21802 0.98206 0.95505 0.89916 1.21381 1.00460 0.94206 0.96997 1.18958 0.94642 0.94887 0.92675 1.21707 1.44811 0.97370 0.94179 0.92260 1.26006 0.95207 1.03346 0.95427 1.70101 1.49138 1.38639 0.99588 0.85439 0.78438 0.79032 0.78101 1.19740 1.20656 1.18714 0.93658 0.91849 0.92582 0.92247 0.90725 0.91409 0.93539 0.90568 0.92114 0.91728 0.91197 0.86074 0.84740 0.84312 0.84299 0.85230 0.84010 0.92407 0.96136 0.93223 0.92926 0.99177 0.99249 0.92771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.91 71.98 0.71 -1.79 16 2 C -0.12 -2.02 5.57 30.60 0.17 -1.85 16 3 C -0.15 -2.99 4.68 30.60 0.14 -2.85 16 4 C 0.09 1.97 2.04 44.92 0.09 2.06 16 5 H 0.07 1.66 7.89 -2.39 -0.02 1.64 16 6 C -0.09 -1.65 4.75 30.59 0.15 -1.51 16 7 C -0.07 -1.52 5.23 29.85 0.16 -1.36 16 8 C -0.09 -1.79 5.13 -19.87 -0.10 -1.89 16 9 C -0.13 -2.73 9.70 22.27 0.22 -2.51 16 10 C -0.13 -2.25 10.05 22.27 0.22 -2.03 16 11 C -0.14 -2.18 10.05 22.27 0.22 -1.95 16 12 C -0.13 -2.03 10.05 22.27 0.22 -1.80 16 13 C -0.13 -2.41 9.70 22.27 0.22 -2.20 16 14 N -0.68 -18.61 5.73 -491.57 -2.81 -21.42 16 15 C 0.07 2.59 5.49 86.30 0.47 3.06 16 16 C -0.09 -3.88 5.37 30.59 0.16 -3.72 16 17 C 0.03 1.41 4.97 29.85 0.15 1.56 16 18 C -0.54 -31.64 9.11 25.60 0.23 -31.41 16 19 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 20 C 0.00 -0.14 5.46 84.66 0.46 0.33 16 21 N -0.93 -57.89 13.29 21.45 0.28 -57.61 16 22 Si 0.97 44.98 29.54 68.60 2.03 47.00 16 23 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 24 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 25 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 26 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 28 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 30 H 0.07 1.12 6.75 -2.39 -0.02 1.11 16 31 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.05 1.13 7.14 -2.39 -0.02 1.11 16 33 H 0.08 1.29 6.49 -2.39 -0.02 1.27 16 34 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.06 1.36 8.09 -2.39 -0.02 1.34 16 36 H 0.07 1.75 7.69 -2.38 -0.02 1.73 16 37 H 0.12 2.40 8.06 -2.91 -0.02 2.37 16 38 H 0.13 1.82 8.06 -2.91 -0.02 1.80 16 39 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 40 H 0.14 1.56 8.06 -2.92 -0.02 1.54 16 41 H 0.13 1.99 8.06 -2.91 -0.02 1.96 16 42 H 0.34 8.87 8.45 -89.69 -0.76 8.12 16 43 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.02 0.72 7.13 -2.38 -0.02 0.70 16 45 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 46 H 0.05 2.23 8.14 -2.38 -0.02 2.21 16 47 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 48 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 49 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -64.94 392.66 3.52 -61.43 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: 0.12 Total: 20.47 kcal Atomic # 6 Polarization: -53.78 SS G_CDS: 3.90 Total: -49.87 kcal Atomic # 7 Polarization: -76.50 SS G_CDS: -2.53 Total: -79.03 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -64.94 3.52 -61.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000462112021.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.082 kcal (2) G-P(sol) polarization free energy of solvation -64.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds