Wall clock time and date at job start Tue Mar 31 2020 06:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.47157 * 2 1 4 4 N 1.46900 * 109.46821 * 119.99870 * 2 1 3 5 5 C 1.46900 * 110.99948 * 60.41938 * 4 2 1 6 6 C 1.52997 * 109.47313 * 76.23915 * 5 4 2 7 7 C 1.50699 * 109.47183 * 186.09370 * 6 5 4 8 8 H 1.07997 * 120.00112 * 359.97438 * 7 6 5 9 9 C 1.37872 * 119.99867 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00057 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 120.00114 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.46774 * 0.02562 * 11 9 7 13 13 H 1.48493 * 109.47255 * 120.00013 * 11 9 7 14 14 H 1.48495 * 109.47171 * 240.00251 * 11 9 7 15 15 C 1.46907 * 110.99854 * 296.46603 * 4 2 1 16 16 C 1.50697 * 109.47022 * 302.58809 * 15 4 2 17 17 C 1.38234 * 120.00343 * 271.56050 * 16 15 4 18 18 C 1.38237 * 119.99911 * 179.76528 * 17 16 15 19 19 C 1.38235 * 120.00140 * 0.51121 * 18 17 16 20 20 C 1.38242 * 119.99697 * 359.73716 * 19 18 17 21 21 C 1.38230 * 120.00135 * 0.02562 * 20 19 18 22 22 C 1.52993 * 109.47244 * 240.00035 * 2 1 3 23 23 C 1.52995 * 109.47315 * 85.57773 * 22 2 1 24 24 C 1.53002 * 109.46859 * 205.57833 * 22 2 1 25 25 C 1.53006 * 109.47169 * 325.57378 * 22 2 1 26 26 H 1.08998 * 109.47253 * 177.67302 * 1 2 3 27 27 H 1.09001 * 109.47069 * 297.68208 * 1 2 3 28 28 H 1.09003 * 109.46700 * 57.67957 * 1 2 3 29 29 H 1.09001 * 109.47043 * 196.24386 * 5 4 2 30 30 H 1.09002 * 109.47222 * 316.23524 * 5 4 2 31 31 H 1.08993 * 109.47030 * 306.09690 * 6 5 4 32 32 H 1.09003 * 109.46810 * 66.09665 * 6 5 4 33 33 H 0.97009 * 119.99747 * 180.02562 * 10 9 7 34 34 H 1.08993 * 109.47295 * 62.59121 * 15 4 2 35 35 H 1.09003 * 109.46910 * 182.59568 * 15 4 2 36 36 H 1.08002 * 120.00087 * 359.97438 * 17 16 15 37 37 H 1.08001 * 120.00095 * 180.22893 * 18 17 16 38 38 H 1.08002 * 120.00238 * 179.72361 * 19 18 17 39 39 H 1.08002 * 119.99737 * 179.97438 * 20 19 18 40 40 H 1.08003 * 120.00136 * 179.97438 * 21 20 19 41 41 H 1.09002 * 109.47110 * 59.99808 * 23 22 2 42 42 H 1.09003 * 109.47015 * 180.02562 * 23 22 2 43 43 H 1.08998 * 109.47171 * 299.99474 * 23 22 2 44 44 H 1.09001 * 109.47405 * 27.16863 * 24 22 2 45 45 H 1.09001 * 109.47165 * 147.17314 * 24 22 2 46 46 H 1.09000 * 109.47043 * 267.16643 * 24 22 2 47 47 H 1.08998 * 109.46301 * 85.00942 * 25 22 2 48 48 H 1.08998 * 109.47074 * 205.00405 * 25 22 2 49 49 H 1.09003 * 109.47028 * 325.01211 * 25 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.5568 -2.0864 1.2284 6 6 2.3809 -2.9180 0.2435 7 6 1.8108 -4.3106 0.1620 8 1 0.9474 -4.5761 0.7539 9 6 2.3922 -5.2460 -0.6673 10 7 3.4446 -4.9231 -1.3869 11 14 1.6852 -6.9721 -0.7689 12 1 0.5097 -7.0793 0.1323 13 1 1.2652 -7.2536 -2.1651 14 1 2.7182 -7.9553 -0.3549 15 6 1.6188 0.0208 2.4196 16 6 2.1388 1.4343 2.3689 17 6 3.4003 1.7246 2.8540 18 6 3.8791 3.0204 2.8030 19 6 3.0924 4.0278 2.2766 20 6 1.8288 3.7383 1.7961 21 6 1.3519 2.4418 1.8426 22 6 2.0401 -0.7212 -1.2492 23 6 2.1052 0.2653 -2.4168 24 6 3.4368 -1.2841 -0.9785 25 6 1.0882 -1.8662 -1.6014 26 1 -0.3634 -1.0268 -0.0417 27 1 -0.3633 0.4774 0.9100 28 1 -0.3633 0.5495 -0.8685 29 1 1.6782 -2.4887 2.2341 30 1 0.5047 -2.1258 0.9459 31 1 2.3468 -2.4532 -0.7418 32 1 3.4144 -2.9679 0.5861 33 1 3.8534 -5.5812 -1.9707 34 1 0.5313 0.0361 2.4909 35 1 2.0330 -0.4876 3.2903 36 1 4.0130 0.9384 3.2698 37 1 4.8661 3.2465 3.1786 38 1 3.4647 5.0409 2.2408 39 1 1.2140 4.5255 1.3852 40 1 0.3646 2.2157 1.4677 41 1 2.7833 1.0810 -2.1659 42 1 2.4682 -0.2487 -3.3069 43 1 1.1102 0.6662 -2.6097 44 1 3.5493 -1.4799 0.0879 45 1 3.5684 -2.2125 -1.5343 46 1 4.1878 -0.5609 -1.2964 47 1 0.2654 -1.4821 -2.2041 48 1 1.6279 -2.6267 -2.1657 49 1 0.6934 -2.3054 -0.6851 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000469444012.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:59 Heat of formation + Delta-G solvation = 115.689718 kcal Electronic energy + Delta-G solvation = -25189.452277 eV Core-core repulsion = 22120.290667 eV Total energy + Delta-G solvation = -3069.161610 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.63492 -38.90287 -34.97227 -33.32910 -31.44988 -30.98863 -30.48111 -28.60235 -26.60696 -26.22466 -25.33444 -24.13483 -22.45119 -22.04461 -20.48243 -20.18849 -17.28215 -16.63251 -16.33990 -15.88032 -15.30694 -14.97094 -14.61876 -14.45079 -13.90756 -13.67187 -13.51749 -13.26512 -13.10473 -12.55809 -12.29951 -12.28242 -12.06557 -11.89585 -11.63063 -11.37882 -11.19949 -10.96395 -10.91959 -10.84161 -10.55788 -10.44596 -10.43246 -10.30504 -9.82932 -9.67588 -9.50945 -9.41753 -9.02221 -8.78794 -8.62372 -8.34817 -7.84284 -7.36180 -5.92729 -3.91609 1.44743 1.50924 3.32790 3.41452 3.44305 3.84989 4.47581 4.68212 4.92782 4.95935 5.07253 5.18969 5.30125 5.39064 5.44448 5.54939 5.60171 5.68089 5.75055 5.81215 5.87192 5.88467 5.94350 6.10017 6.15831 6.17531 6.26602 6.30920 6.37427 6.42798 6.48569 6.54297 6.57530 6.59006 6.72849 6.77694 6.86500 6.97425 7.04861 7.10278 7.12948 7.35147 7.43742 7.59276 7.68859 7.76081 7.91181 8.11021 8.32808 8.55018 9.16534 9.69273 11.17078 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.024154 B = 0.004642 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.955684 B = 6030.505119 C = 6323.923020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.092 3.908 3 H 0.076 0.924 4 N -0.520 5.520 5 C 0.049 3.951 6 C -0.047 4.047 7 C -0.516 4.516 8 H 0.046 0.954 9 C 0.063 3.937 10 N -0.890 5.890 11 Si 0.881 3.119 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.286 1.286 15 C 0.085 3.915 16 C -0.065 4.065 17 C -0.099 4.099 18 C -0.123 4.123 19 C -0.128 4.128 20 C -0.125 4.125 21 C -0.117 4.117 22 C -0.059 4.059 23 C -0.136 4.136 24 C -0.155 4.155 25 C -0.153 4.153 26 H 0.072 0.928 27 H 0.046 0.954 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.034 0.966 31 H 0.119 0.881 32 H 0.018 0.982 33 H 0.258 0.742 34 H 0.038 0.962 35 H 0.078 0.922 36 H 0.123 0.877 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.119 0.881 41 H 0.046 0.954 42 H 0.053 0.947 43 H 0.043 0.957 44 H 0.107 0.893 45 H 0.081 0.919 46 H 0.008 0.992 47 H 0.020 0.980 48 H 0.071 0.929 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.919 15.703 4.556 16.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.017 4.017 3 H 0.094 0.906 4 N -0.243 5.243 5 C -0.077 4.077 6 C -0.082 4.082 7 C -0.555 4.555 8 H 0.064 0.936 9 C -0.138 4.138 10 N -0.530 5.530 11 Si 0.710 3.290 12 H -0.200 1.200 13 H -0.212 1.212 14 H -0.212 1.212 15 C -0.042 4.042 16 C -0.066 4.066 17 C -0.118 4.118 18 C -0.141 4.141 19 C -0.147 4.147 20 C -0.143 4.143 21 C -0.135 4.135 22 C -0.060 4.060 23 C -0.194 4.194 24 C -0.211 4.211 25 C -0.209 4.209 26 H 0.091 0.909 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.136 0.864 32 H 0.037 0.963 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.097 0.903 36 H 0.141 0.859 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.137 0.863 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.062 0.938 44 H 0.125 0.875 45 H 0.100 0.900 46 H 0.027 0.973 47 H 0.039 0.961 48 H 0.089 0.911 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.289 15.597 4.433 16.376 hybrid contribution -1.258 -1.021 -0.027 1.620 sum -3.546 14.576 4.406 15.635 Atomic orbital electron populations 1.22659 0.98734 1.02995 1.00720 1.21717 0.91712 0.97692 0.90580 0.90581 1.62510 1.58872 1.02911 1.00046 1.22584 0.98208 0.85879 1.01045 1.21781 0.94254 0.93243 0.98914 1.21366 1.13243 0.96931 1.23990 0.93553 1.24872 0.94989 0.98014 0.95947 1.69927 1.21372 1.34246 1.27434 0.86716 0.79047 0.85619 0.77658 1.20039 1.21200 1.21234 1.21132 0.97664 0.90528 0.94911 1.19865 0.94445 0.95044 0.97238 1.21068 0.95184 0.96356 0.99154 1.21125 0.99594 0.93210 1.00165 1.21072 0.94776 0.98990 0.99813 1.21062 0.96222 0.96469 1.00514 1.21146 0.99978 0.92779 0.99604 1.20686 0.97588 0.95027 0.92672 1.21943 1.00267 0.98608 0.98551 1.22993 0.92007 0.99370 1.06708 1.22632 0.97597 0.97297 1.03326 0.90902 0.93507 0.92683 0.93097 0.94826 0.86418 0.96345 0.93263 0.94382 0.90335 0.85896 0.86395 0.86626 0.86555 0.86332 0.93493 0.92801 0.93763 0.87512 0.90045 0.97281 0.96148 0.91052 0.88929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.89 7.40 37.16 0.28 -2.61 16 2 C 0.09 1.51 1.65 -67.71 -0.11 1.40 16 3 H 0.08 1.25 5.61 -51.93 -0.29 0.95 16 4 N -0.52 -9.05 3.24 -228.08 -0.74 -9.79 16 5 C 0.05 0.99 4.34 -3.83 -0.02 0.97 16 6 C -0.05 -1.12 1.80 -27.89 -0.05 -1.17 16 7 C -0.52 -13.80 8.30 -34.44 -0.29 -14.09 16 8 H 0.05 1.24 7.74 -52.49 -0.41 0.83 16 9 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 10 N -0.89 -25.20 13.15 55.43 0.73 -24.47 16 11 Si 0.88 21.22 29.54 -169.99 -5.02 16.20 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 15 C 0.09 1.26 4.74 -4.97 -0.02 1.24 16 16 C -0.07 -0.90 4.53 -104.62 -0.47 -1.37 16 17 C -0.10 -1.30 9.71 -39.58 -0.38 -1.69 16 18 C -0.12 -1.43 10.05 -39.58 -0.40 -1.83 16 19 C -0.13 -1.41 10.05 -39.58 -0.40 -1.81 16 20 C -0.12 -1.42 10.05 -39.58 -0.40 -1.81 16 21 C -0.12 -1.47 7.84 -39.58 -0.31 -1.78 16 22 C -0.06 -1.08 0.60 -154.51 -0.09 -1.17 16 23 C -0.14 -2.17 8.00 37.16 0.30 -1.87 16 24 C -0.15 -3.22 7.17 37.16 0.27 -2.95 16 25 C -0.15 -3.04 5.78 37.16 0.21 -2.82 16 26 H 0.07 1.20 4.60 -51.93 -0.24 0.96 16 27 H 0.05 0.63 4.93 -51.93 -0.26 0.38 16 28 H 0.05 0.76 7.70 -51.93 -0.40 0.36 16 29 H 0.05 1.03 7.86 -51.93 -0.41 0.62 16 30 H 0.03 0.68 4.70 -51.93 -0.24 0.43 16 31 H 0.12 2.70 0.28 -136.97 -0.04 2.66 16 32 H 0.02 0.50 6.85 -51.93 -0.36 0.14 16 33 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 34 H 0.04 0.54 6.40 -51.93 -0.33 0.21 16 35 H 0.08 1.14 7.99 -51.93 -0.41 0.72 16 36 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 37 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 38 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 39 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.12 1.41 6.24 -52.48 -0.33 1.08 16 41 H 0.05 0.71 8.09 -51.93 -0.42 0.29 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.04 0.63 7.68 -51.93 -0.40 0.24 16 44 H 0.11 2.35 3.49 -51.93 -0.18 2.17 16 45 H 0.08 1.95 6.33 -51.93 -0.33 1.62 16 46 H 0.01 0.17 7.78 -51.93 -0.40 -0.24 16 47 H 0.02 0.36 7.74 -51.93 -0.40 -0.04 16 48 H 0.07 1.65 7.07 -51.93 -0.37 1.28 16 49 H 0.09 1.96 2.49 -51.93 -0.13 1.83 16 LS Contribution 344.96 15.07 5.20 5.20 Total: -1.00 -27.65 344.96 -9.41 -37.06 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -7.59 Total: 7.55 kcal Atomic # 6 Polarization: -29.77 SS G_CDS: -1.99 Total: -31.75 kcal Atomic # 7 Polarization: -34.25 SS G_CDS: -0.01 Total: -34.26 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -27.65 -9.41 -37.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000469444012.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.752 kcal (2) G-P(sol) polarization free energy of solvation -27.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds