Wall clock time and date at job start Tue Mar 31 2020 06:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.47157 * 2 1 4 4 N 1.46900 * 109.46821 * 119.99870 * 2 1 3 5 5 C 1.46900 * 110.99948 * 60.41938 * 4 2 1 6 6 C 1.52997 * 109.47313 * 76.23915 * 5 4 2 7 7 C 1.50699 * 109.47183 * 186.09370 * 6 5 4 8 8 H 1.07997 * 120.00112 * 359.97438 * 7 6 5 9 9 C 1.37872 * 119.99867 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00057 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 120.00114 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.46774 * 0.02562 * 11 9 7 13 13 H 1.48493 * 109.47255 * 120.00013 * 11 9 7 14 14 H 1.48495 * 109.47171 * 240.00251 * 11 9 7 15 15 C 1.46907 * 110.99854 * 296.46603 * 4 2 1 16 16 C 1.50697 * 109.47022 * 302.58809 * 15 4 2 17 17 C 1.38234 * 120.00343 * 271.56050 * 16 15 4 18 18 C 1.38237 * 119.99911 * 179.76528 * 17 16 15 19 19 C 1.38235 * 120.00140 * 0.51121 * 18 17 16 20 20 C 1.38242 * 119.99697 * 359.73716 * 19 18 17 21 21 C 1.38230 * 120.00135 * 0.02562 * 20 19 18 22 22 C 1.52993 * 109.47244 * 240.00035 * 2 1 3 23 23 C 1.52995 * 109.47315 * 85.57773 * 22 2 1 24 24 C 1.53002 * 109.46859 * 205.57833 * 22 2 1 25 25 C 1.53006 * 109.47169 * 325.57378 * 22 2 1 26 26 H 1.08998 * 109.47253 * 177.67302 * 1 2 3 27 27 H 1.09001 * 109.47069 * 297.68208 * 1 2 3 28 28 H 1.09003 * 109.46700 * 57.67957 * 1 2 3 29 29 H 1.09001 * 109.47043 * 196.24386 * 5 4 2 30 30 H 1.09002 * 109.47222 * 316.23524 * 5 4 2 31 31 H 1.08993 * 109.47030 * 306.09690 * 6 5 4 32 32 H 1.09003 * 109.46810 * 66.09665 * 6 5 4 33 33 H 0.97009 * 119.99747 * 180.02562 * 10 9 7 34 34 H 1.08993 * 109.47295 * 62.59121 * 15 4 2 35 35 H 1.09003 * 109.46910 * 182.59568 * 15 4 2 36 36 H 1.08002 * 120.00087 * 359.97438 * 17 16 15 37 37 H 1.08001 * 120.00095 * 180.22893 * 18 17 16 38 38 H 1.08002 * 120.00238 * 179.72361 * 19 18 17 39 39 H 1.08002 * 119.99737 * 179.97438 * 20 19 18 40 40 H 1.08003 * 120.00136 * 179.97438 * 21 20 19 41 41 H 1.09002 * 109.47110 * 59.99808 * 23 22 2 42 42 H 1.09003 * 109.47015 * 180.02562 * 23 22 2 43 43 H 1.08998 * 109.47171 * 299.99474 * 23 22 2 44 44 H 1.09001 * 109.47405 * 27.16863 * 24 22 2 45 45 H 1.09001 * 109.47165 * 147.17314 * 24 22 2 46 46 H 1.09000 * 109.47043 * 267.16643 * 24 22 2 47 47 H 1.08998 * 109.46301 * 85.00942 * 25 22 2 48 48 H 1.08998 * 109.47074 * 205.00405 * 25 22 2 49 49 H 1.09003 * 109.47028 * 325.01211 * 25 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.5568 -2.0864 1.2284 6 6 2.3809 -2.9180 0.2435 7 6 1.8108 -4.3106 0.1620 8 1 0.9474 -4.5761 0.7539 9 6 2.3922 -5.2460 -0.6673 10 7 3.4446 -4.9231 -1.3869 11 14 1.6852 -6.9721 -0.7689 12 1 0.5097 -7.0793 0.1323 13 1 1.2652 -7.2536 -2.1651 14 1 2.7182 -7.9553 -0.3549 15 6 1.6188 0.0208 2.4196 16 6 2.1388 1.4343 2.3689 17 6 3.4003 1.7246 2.8540 18 6 3.8791 3.0204 2.8030 19 6 3.0924 4.0278 2.2766 20 6 1.8288 3.7383 1.7961 21 6 1.3519 2.4418 1.8426 22 6 2.0401 -0.7212 -1.2492 23 6 2.1052 0.2653 -2.4168 24 6 3.4368 -1.2841 -0.9785 25 6 1.0882 -1.8662 -1.6014 26 1 -0.3634 -1.0268 -0.0417 27 1 -0.3633 0.4774 0.9100 28 1 -0.3633 0.5495 -0.8685 29 1 1.6782 -2.4887 2.2341 30 1 0.5047 -2.1258 0.9459 31 1 2.3468 -2.4532 -0.7418 32 1 3.4144 -2.9679 0.5861 33 1 3.8534 -5.5812 -1.9707 34 1 0.5313 0.0361 2.4909 35 1 2.0330 -0.4876 3.2903 36 1 4.0130 0.9384 3.2698 37 1 4.8661 3.2465 3.1786 38 1 3.4647 5.0409 2.2408 39 1 1.2140 4.5255 1.3852 40 1 0.3646 2.2157 1.4677 41 1 2.7833 1.0810 -2.1659 42 1 2.4682 -0.2487 -3.3069 43 1 1.1102 0.6662 -2.6097 44 1 3.5493 -1.4799 0.0879 45 1 3.5684 -2.2125 -1.5343 46 1 4.1878 -0.5609 -1.2964 47 1 0.2654 -1.4821 -2.2041 48 1 1.6279 -2.6267 -2.1657 49 1 0.6934 -2.3054 -0.6851 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000469444012.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:58 Heat of formation + Delta-G solvation = 102.878555 kcal Electronic energy + Delta-G solvation = -25190.007811 eV Core-core repulsion = 22120.290667 eV Total energy + Delta-G solvation = -3069.717144 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.09081 -39.90748 -36.31940 -35.20745 -32.98807 -32.13076 -31.59631 -30.00151 -28.13258 -27.80235 -26.84972 -25.69105 -23.42509 -23.33342 -22.01718 -21.47843 -18.77457 -18.40201 -17.49542 -17.27690 -16.63395 -16.38717 -16.05843 -15.82932 -15.33180 -15.03019 -15.00315 -14.48366 -14.20301 -13.92533 -13.63431 -13.54902 -13.43616 -13.32424 -12.95342 -12.86674 -12.78847 -12.64281 -12.44726 -12.21607 -12.12712 -12.03009 -11.86827 -11.67795 -11.38943 -11.23676 -11.22876 -11.05511 -10.79790 -10.38103 -9.71756 -9.70183 -9.57496 -8.80904 -8.03982 -6.08887 0.52171 0.60451 1.39093 1.41856 1.51531 2.46461 2.87838 3.27319 3.36766 3.85186 3.95191 4.03096 4.07509 4.23330 4.25746 4.35383 4.41855 4.47989 4.58130 4.59495 4.64587 4.67680 4.71168 4.79442 4.86720 4.91562 4.97805 5.00076 5.07842 5.15787 5.18236 5.21031 5.26394 5.32825 5.40734 5.42212 5.48996 5.62755 5.65505 5.69293 5.71094 5.80552 5.83661 5.89054 6.01131 6.19689 6.25173 6.35676 6.50415 6.58308 7.11762 7.54616 9.05059 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.024154 B = 0.004642 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.955684 B = 6030.505119 C = 6323.923020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.098 3.902 3 H 0.087 0.913 4 N -0.530 5.530 5 C 0.063 3.937 6 C -0.043 4.043 7 C -0.530 4.530 8 H 0.041 0.959 9 C 0.014 3.986 10 N -0.918 5.918 11 Si 0.940 3.060 12 H -0.269 1.269 13 H -0.281 1.281 14 H -0.285 1.285 15 C 0.089 3.911 16 C -0.082 4.082 17 C -0.118 4.118 18 C -0.129 4.129 19 C -0.127 4.127 20 C -0.126 4.126 21 C -0.123 4.123 22 C -0.059 4.059 23 C -0.132 4.132 24 C -0.147 4.147 25 C -0.144 4.144 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.042 0.958 30 H 0.037 0.963 31 H 0.134 0.866 32 H -0.024 1.024 33 H 0.257 0.743 34 H 0.047 0.953 35 H 0.073 0.927 36 H 0.116 0.884 37 H 0.136 0.864 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.127 0.873 41 H 0.058 0.942 42 H 0.047 0.953 43 H 0.067 0.933 44 H 0.091 0.909 45 H 0.042 0.958 46 H 0.018 0.982 47 H 0.044 0.956 48 H 0.031 0.969 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.320 18.268 4.506 19.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.010 4.010 3 H 0.105 0.895 4 N -0.253 5.253 5 C -0.064 4.064 6 C -0.078 4.078 7 C -0.569 4.569 8 H 0.060 0.940 9 C -0.184 4.184 10 N -0.559 5.559 11 Si 0.767 3.233 12 H -0.194 1.194 13 H -0.207 1.207 14 H -0.211 1.211 15 C -0.038 4.038 16 C -0.082 4.082 17 C -0.136 4.136 18 C -0.146 4.146 19 C -0.145 4.145 20 C -0.143 4.143 21 C -0.142 4.142 22 C -0.059 4.059 23 C -0.189 4.189 24 C -0.203 4.203 25 C -0.200 4.200 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.150 0.850 32 H -0.006 1.006 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.134 0.866 37 H 0.154 0.846 38 H 0.160 0.840 39 H 0.160 0.840 40 H 0.145 0.855 41 H 0.077 0.923 42 H 0.066 0.934 43 H 0.086 0.914 44 H 0.110 0.890 45 H 0.061 0.939 46 H 0.037 0.963 47 H 0.063 0.937 48 H 0.050 0.950 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.698 18.170 4.395 19.056 hybrid contribution -0.762 -1.754 0.019 1.912 sum -4.460 16.416 4.414 17.575 Atomic orbital electron populations 1.22589 0.97079 1.02395 1.02529 1.21670 0.92951 0.97434 0.88961 0.89498 1.62360 1.59470 1.01768 1.01734 1.22234 0.97535 0.87397 0.99244 1.21758 0.92161 0.93109 1.00746 1.21726 1.13029 0.98536 1.23562 0.94022 1.25585 0.95388 1.01573 0.95823 1.70060 1.22495 1.35261 1.28064 0.85776 0.78437 0.81301 0.77764 1.19382 1.20702 1.21146 1.21105 0.98179 0.91242 0.93308 1.19777 0.95093 0.94427 0.98895 1.21176 0.95307 0.97216 0.99937 1.21390 1.00598 0.92701 0.99956 1.21445 0.94531 1.00051 0.98516 1.21398 0.96595 0.96525 0.99819 1.21280 1.00202 0.93110 0.99581 1.20661 0.95175 0.95154 0.94959 1.21890 1.01990 0.98075 0.96957 1.22784 0.94535 0.97962 1.05034 1.22472 0.98173 0.96996 1.02394 0.92632 0.91825 0.90787 0.93984 0.94473 0.84986 1.00558 0.93379 0.93516 0.90825 0.86592 0.84629 0.83966 0.84026 0.85525 0.92333 0.93417 0.91435 0.89036 0.93906 0.96315 0.93696 0.95018 0.90320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.13 7.40 71.98 0.53 -4.59 16 2 C 0.10 3.07 1.65 44.91 0.07 3.15 16 3 H 0.09 2.61 5.61 -2.39 -0.01 2.59 16 4 N -0.53 -18.43 3.24 -875.52 -2.84 -21.27 16 5 C 0.06 2.60 4.34 86.30 0.37 2.97 16 6 C -0.04 -2.14 1.80 29.85 0.05 -2.08 16 7 C -0.53 -29.35 8.30 25.60 0.21 -29.14 16 8 H 0.04 2.29 7.74 -2.91 -0.02 2.26 16 9 C 0.01 0.81 5.46 84.65 0.46 1.27 16 10 N -0.92 -54.12 13.15 21.44 0.28 -53.84 16 11 Si 0.94 44.45 29.54 68.60 2.03 46.47 16 12 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 13 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 14 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 15 C 0.09 2.57 4.74 85.55 0.41 2.98 16 16 C -0.08 -2.12 4.53 -19.87 -0.09 -2.21 16 17 C -0.12 -2.99 9.71 22.27 0.22 -2.77 16 18 C -0.13 -2.71 10.05 22.27 0.22 -2.49 16 19 C -0.13 -2.36 10.05 22.27 0.22 -2.14 16 20 C -0.13 -2.39 10.05 22.27 0.22 -2.16 16 21 C -0.12 -2.76 7.84 22.27 0.17 -2.58 16 22 C -0.06 -2.11 0.60 -52.18 -0.03 -2.14 16 23 C -0.13 -3.89 8.00 71.98 0.58 -3.32 16 24 C -0.15 -6.31 7.17 71.98 0.52 -5.79 16 25 C -0.14 -5.77 5.78 71.98 0.42 -5.35 16 26 H 0.05 1.73 4.60 -2.39 -0.01 1.72 16 27 H 0.06 1.53 4.93 -2.39 -0.01 1.52 16 28 H 0.07 1.75 7.70 -2.39 -0.02 1.73 16 29 H 0.04 1.77 7.86 -2.39 -0.02 1.75 16 30 H 0.04 1.51 4.70 -2.39 -0.01 1.50 16 31 H 0.13 6.33 0.28 -82.26 -0.02 6.31 16 32 H -0.02 -1.37 6.85 -2.39 -0.02 -1.39 16 33 H 0.26 14.50 8.31 -92.70 -0.77 13.72 16 34 H 0.05 1.27 6.40 -2.39 -0.02 1.25 16 35 H 0.07 2.16 7.99 -2.39 -0.02 2.14 16 36 H 0.12 2.98 8.06 -2.91 -0.02 2.96 16 37 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 38 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 39 H 0.14 1.95 8.06 -2.91 -0.02 1.92 16 40 H 0.13 2.57 6.24 -2.91 -0.02 2.55 16 41 H 0.06 1.60 8.09 -2.39 -0.02 1.58 16 42 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.07 1.69 7.68 -2.39 -0.02 1.67 16 44 H 0.09 4.23 3.49 -2.39 -0.01 4.22 16 45 H 0.04 2.16 6.33 -2.39 -0.02 2.15 16 46 H 0.02 0.73 7.78 -2.39 -0.02 0.71 16 47 H 0.04 1.54 7.74 -2.39 -0.02 1.52 16 48 H 0.03 1.50 7.07 -2.39 -0.02 1.49 16 49 H 0.08 3.37 2.49 -2.39 -0.01 3.37 16 Total: -1.00 -61.81 344.96 4.95 -56.86 By element: Atomic # 1 Polarization: 27.25 SS G_CDS: 0.92 Total: 28.17 kcal Atomic # 6 Polarization: -60.97 SS G_CDS: 4.56 Total: -56.40 kcal Atomic # 7 Polarization: -72.55 SS G_CDS: -2.56 Total: -75.11 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Total: -61.81 4.95 -56.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000469444012.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.741 kcal (2) G-P(sol) polarization free energy of solvation -61.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds