Wall clock time and date at job start Tue Mar 31 2020 06:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47094 * 2 1 4 4 C 1.52998 * 109.46671 * 240.00005 * 2 1 3 5 5 C 1.50704 * 109.46872 * 175.00324 * 4 2 1 6 6 H 1.08003 * 120.00173 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00350 * 180.02562 * 5 4 2 8 8 N 1.31518 * 119.99674 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00432 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47164 * 89.99701 * 9 7 5 11 11 H 1.48501 * 109.47364 * 209.99882 * 9 7 5 12 12 H 1.48506 * 109.47177 * 329.99569 * 9 7 5 13 13 S 1.81402 * 109.47111 * 120.00266 * 2 1 3 14 14 C 1.76202 * 102.99829 * 294.99834 * 13 2 1 15 15 C 1.39017 * 120.08584 * 89.99792 * 14 13 2 16 16 Cl 1.73599 * 120.04653 * 0.02562 * 15 14 13 17 17 C 1.38206 * 119.90901 * 179.71759 * 15 14 13 18 18 C 1.38293 * 120.08962 * 0.26163 * 17 15 14 19 19 C 1.38291 * 120.17120 * 0.04200 * 18 17 15 20 20 C 1.38204 * 120.09038 * 359.95413 * 19 18 17 21 21 Cl 1.73598 * 120.04528 * 180.02562 * 20 19 18 22 22 H 1.09004 * 109.47190 * 59.99565 * 1 2 3 23 23 H 1.08992 * 109.47799 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47077 * 300.00068 * 1 2 3 25 25 H 1.08994 * 109.47486 * 294.99647 * 4 2 1 26 26 H 1.08992 * 109.47452 * 55.00575 * 4 2 1 27 27 H 0.96994 * 119.99869 * 180.02562 * 8 7 5 28 28 H 1.07999 * 119.95463 * 180.27526 * 17 15 14 29 29 H 1.08001 * 119.91531 * 180.02562 * 18 17 15 30 30 H 1.08006 * 119.95790 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5418 -0.6150 -1.3127 6 1 4.0789 -0.0856 -0.5396 7 6 4.2303 -1.1927 -2.3583 8 7 3.5762 -1.8370 -3.3001 9 14 6.0919 -1.0604 -2.4374 10 1 6.7007 -2.2130 -1.7260 11 1 6.5288 -1.0678 -3.8567 12 1 6.5261 0.2048 -1.7924 13 16 2.1347 -0.8552 1.4811 14 6 1.5827 0.1846 2.7922 15 6 0.3366 -0.0261 3.3712 16 17 -0.6787 -1.3150 2.8041 17 6 -0.0903 0.7880 4.4033 18 6 0.7182 1.8144 4.8565 19 6 1.9558 2.0311 4.2788 20 6 2.3899 1.2213 3.2464 21 17 3.9440 1.4940 2.5225 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0275 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.7516 -1.7715 -1.2056 26 1 1.6053 -0.2617 -2.1369 27 1 4.0606 -2.2437 -4.0354 28 1 -1.0564 0.6222 4.8567 29 1 0.3820 2.4486 5.6635 30 1 2.5842 2.8339 4.6352 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000470441215.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:07 Heat of formation + Delta-G solvation = -1.532218 kcal Electronic energy + Delta-G solvation = -16268.667351 eV Core-core repulsion = 13434.400761 eV Total energy + Delta-G solvation = -2834.266589 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 289.999 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.28287 -36.62392 -36.11243 -34.50255 -32.04109 -31.04153 -30.72493 -27.42174 -23.30037 -23.17433 -22.79734 -20.52098 -17.94909 -16.32159 -16.27252 -15.94424 -15.11673 -14.52722 -14.36824 -14.33867 -14.02135 -12.96073 -12.64616 -12.40064 -12.20184 -11.93647 -11.75252 -11.51941 -11.05319 -10.95996 -10.89413 -10.75791 -10.68880 -10.49483 -10.33689 -9.85741 -9.39353 -9.11244 -8.77320 -8.57159 -8.28805 -6.88289 -5.97506 -3.97840 0.74418 0.90221 1.81740 2.31527 2.36991 3.11955 3.36607 3.42414 3.46333 3.56971 4.50408 4.63703 4.80440 4.95687 5.18474 5.25892 5.40261 5.70985 5.78665 5.83055 5.85774 6.00708 6.04329 6.35626 6.40581 6.65468 6.73726 7.55026 7.64947 8.00964 8.38234 9.07444 9.65583 11.14037 Molecular weight = 290.00amu Principal moments of inertia in cm(-1) A = 0.020016 B = 0.006221 C = 0.005044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.549520 B = 4500.016328 C = 5549.629533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.047 4.047 3 H 0.075 0.925 4 C 0.041 3.959 5 C -0.512 4.512 6 H 0.066 0.934 7 C 0.059 3.941 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.274 1.274 13 S -0.104 6.104 14 C -0.109 4.109 15 C 0.010 3.990 16 Cl -0.038 7.038 17 C -0.122 4.122 18 C -0.085 4.085 19 C -0.121 4.121 20 C 0.010 3.990 21 Cl -0.029 7.029 22 H 0.058 0.942 23 H 0.064 0.936 24 H 0.040 0.960 25 H 0.027 0.973 26 H 0.035 0.965 27 H 0.260 0.740 28 H 0.138 0.862 29 H 0.140 0.860 30 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.637 7.194 16.189 19.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.175 4.175 3 H 0.094 0.906 4 C 0.002 3.998 5 C -0.551 4.551 6 H 0.084 0.916 7 C -0.142 4.142 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.206 1.206 11 H -0.214 1.214 12 H -0.198 1.198 13 S 0.130 5.870 14 C -0.221 4.221 15 C -0.021 4.021 16 Cl -0.009 7.009 17 C -0.143 4.143 18 C -0.104 4.104 19 C -0.141 4.141 20 C -0.020 4.020 21 Cl 0.000 7.000 22 H 0.077 0.923 23 H 0.083 0.917 24 H 0.059 0.941 25 H 0.045 0.955 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.156 0.844 29 H 0.158 0.842 30 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.947 6.012 15.919 18.380 hybrid contribution 0.373 1.133 -0.205 1.210 sum -6.575 7.144 15.715 18.472 Atomic orbital electron populations 1.22200 0.95106 1.02374 1.00635 1.23602 0.96267 1.01765 0.95870 0.90627 1.19020 0.96581 0.95658 0.88503 1.21264 0.91446 1.34327 1.08068 0.91625 1.24966 0.98267 0.95328 0.95660 1.69956 1.35480 1.36081 1.12145 0.86624 0.86046 0.78624 0.76972 1.20576 1.21392 1.19839 1.86047 1.73451 1.32153 0.95330 1.22232 0.95151 1.00620 1.04118 1.21215 0.91766 0.92555 0.96521 1.98395 1.66348 1.47916 1.88247 1.21136 1.01090 0.95573 0.96473 1.21116 0.93168 0.96885 0.99215 1.21168 0.97201 0.99936 0.95840 1.21284 0.89345 0.95676 0.95740 1.98431 1.24320 1.95264 1.81986 0.92295 0.91700 0.94079 0.95451 0.94688 0.93044 0.84380 0.84241 0.84319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 8.03 37.16 0.30 -2.24 16 2 C -0.05 -0.98 2.74 -26.73 -0.07 -1.06 16 3 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 4 C 0.04 1.03 4.45 -27.88 -0.12 0.91 16 5 C -0.51 -14.24 8.53 -34.44 -0.29 -14.53 16 6 H 0.07 1.81 7.60 -52.48 -0.40 1.41 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 8 N -0.90 -26.79 13.29 55.43 0.74 -26.06 16 9 Si 0.89 22.03 29.54 -169.99 -5.02 17.00 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 13 S -0.10 -2.08 18.23 -107.50 -1.96 -4.04 16 14 C -0.11 -1.79 5.25 -39.00 -0.20 -1.99 16 15 C 0.01 0.14 5.51 -39.30 -0.22 -0.08 16 16 Cl -0.04 -0.54 25.70 -51.86 -1.33 -1.88 16 17 C -0.12 -1.33 9.82 -39.57 -0.39 -1.72 16 18 C -0.09 -0.81 10.04 -39.54 -0.40 -1.21 16 19 C -0.12 -1.37 9.82 -39.57 -0.39 -1.76 16 20 C 0.01 0.15 6.34 -39.30 -0.25 -0.10 16 21 Cl -0.03 -0.48 27.84 -51.86 -1.44 -1.92 16 22 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 23 H 0.06 1.15 7.86 -51.93 -0.41 0.74 16 24 H 0.04 0.66 6.09 -51.93 -0.32 0.34 16 25 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 29 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 30 H 0.14 1.23 8.06 -52.48 -0.42 0.81 16 LS Contribution 298.51 15.07 4.50 4.50 Total: -1.00 -30.07 298.51 -9.87 -39.94 By element: Atomic # 1 Polarization: -2.12 SS G_CDS: -3.22 Total: -5.33 kcal Atomic # 6 Polarization: -20.08 SS G_CDS: -2.13 Total: -22.21 kcal Atomic # 7 Polarization: -26.79 SS G_CDS: 0.74 Total: -26.06 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: -2.08 SS G_CDS: -1.96 Total: -4.04 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -2.78 Total: -3.80 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.07 -9.87 -39.94 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000470441215.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.408 kcal (2) G-P(sol) polarization free energy of solvation -30.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds