Wall clock time and date at job start Tue Mar 31 2020 06:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47094 * 2 1 4 4 C 1.52998 * 109.46671 * 240.00005 * 2 1 3 5 5 C 1.50704 * 109.46872 * 175.00324 * 4 2 1 6 6 H 1.08003 * 120.00173 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00350 * 180.02562 * 5 4 2 8 8 N 1.31518 * 119.99674 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00432 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47164 * 89.99701 * 9 7 5 11 11 H 1.48501 * 109.47364 * 209.99882 * 9 7 5 12 12 H 1.48506 * 109.47177 * 329.99569 * 9 7 5 13 13 S 1.81402 * 109.47111 * 120.00266 * 2 1 3 14 14 C 1.76202 * 102.99829 * 294.99834 * 13 2 1 15 15 C 1.39017 * 120.08584 * 89.99792 * 14 13 2 16 16 Cl 1.73599 * 120.04653 * 0.02562 * 15 14 13 17 17 C 1.38206 * 119.90901 * 179.71759 * 15 14 13 18 18 C 1.38293 * 120.08962 * 0.26163 * 17 15 14 19 19 C 1.38291 * 120.17120 * 0.04200 * 18 17 15 20 20 C 1.38204 * 120.09038 * 359.95413 * 19 18 17 21 21 Cl 1.73598 * 120.04528 * 180.02562 * 20 19 18 22 22 H 1.09004 * 109.47190 * 59.99565 * 1 2 3 23 23 H 1.08992 * 109.47799 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47077 * 300.00068 * 1 2 3 25 25 H 1.08994 * 109.47486 * 294.99647 * 4 2 1 26 26 H 1.08992 * 109.47452 * 55.00575 * 4 2 1 27 27 H 0.96994 * 119.99869 * 180.02562 * 8 7 5 28 28 H 1.07999 * 119.95463 * 180.27526 * 17 15 14 29 29 H 1.08001 * 119.91531 * 180.02562 * 18 17 15 30 30 H 1.08006 * 119.95790 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5418 -0.6150 -1.3127 6 1 4.0789 -0.0856 -0.5396 7 6 4.2303 -1.1927 -2.3583 8 7 3.5762 -1.8370 -3.3001 9 14 6.0919 -1.0604 -2.4374 10 1 6.7007 -2.2130 -1.7260 11 1 6.5288 -1.0678 -3.8567 12 1 6.5261 0.2048 -1.7924 13 16 2.1347 -0.8552 1.4811 14 6 1.5827 0.1846 2.7922 15 6 0.3366 -0.0261 3.3712 16 17 -0.6787 -1.3150 2.8041 17 6 -0.0903 0.7880 4.4033 18 6 0.7182 1.8144 4.8565 19 6 1.9558 2.0311 4.2788 20 6 2.3899 1.2213 3.2464 21 17 3.9440 1.4940 2.5225 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0275 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.7516 -1.7715 -1.2056 26 1 1.6053 -0.2617 -2.1369 27 1 4.0606 -2.2437 -4.0354 28 1 -1.0564 0.6222 4.8567 29 1 0.3820 2.4486 5.6635 30 1 2.5842 2.8339 4.6352 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000470441215.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:07 Heat of formation + Delta-G solvation = -16.624723 kcal Electronic energy + Delta-G solvation = -16269.321811 eV Core-core repulsion = 13434.400761 eV Total energy + Delta-G solvation = -2834.921049 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 289.999 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.26631 -37.71988 -37.20176 -36.39524 -34.04371 -32.07770 -31.68578 -29.35404 -25.26223 -24.17635 -23.79799 -22.27657 -19.03807 -18.48287 -17.42684 -16.99875 -16.54688 -16.50860 -15.42035 -15.38460 -15.34169 -14.61918 -14.19512 -13.70587 -13.66951 -13.40711 -13.13045 -12.81289 -12.72328 -12.60993 -12.37347 -12.21402 -12.03942 -11.94013 -11.89221 -11.47622 -11.23529 -11.02309 -10.55768 -9.76942 -9.75579 -8.43825 -8.17456 -6.23923 -0.31035 -0.05490 0.62061 1.10416 1.27545 1.38417 1.40051 1.50114 1.84001 2.41820 2.42930 3.17771 3.83251 3.86596 4.08261 4.16661 4.19372 4.23756 4.35016 4.51263 4.86027 4.91175 4.97152 5.00904 5.13635 5.17361 5.40299 5.53508 5.54200 5.81062 6.23061 6.88033 7.42892 8.94689 Molecular weight = 290.00amu Principal moments of inertia in cm(-1) A = 0.020016 B = 0.006221 C = 0.005044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.549520 B = 4500.016328 C = 5549.629533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.038 4.038 3 H 0.067 0.933 4 C 0.049 3.951 5 C -0.519 4.519 6 H 0.063 0.937 7 C 0.005 3.995 8 N -0.932 5.932 9 Si 0.951 3.049 10 H -0.276 1.276 11 H -0.281 1.281 12 H -0.266 1.266 13 S -0.148 6.148 14 C -0.129 4.129 15 C -0.003 4.003 16 Cl -0.047 7.047 17 C -0.113 4.113 18 C -0.060 4.060 19 C -0.115 4.115 20 C -0.008 4.008 21 Cl -0.054 7.054 22 H 0.065 0.935 23 H 0.060 0.940 24 H 0.059 0.941 25 H -0.001 1.001 26 H 0.014 0.986 27 H 0.262 0.738 28 H 0.171 0.829 29 H 0.190 0.810 30 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.308 9.041 18.991 22.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.166 4.166 3 H 0.085 0.915 4 C 0.011 3.989 5 C -0.558 4.558 6 H 0.081 0.919 7 C -0.192 4.192 8 N -0.573 5.573 9 Si 0.777 3.223 10 H -0.202 1.202 11 H -0.206 1.206 12 H -0.190 1.190 13 S 0.085 5.915 14 C -0.242 4.242 15 C -0.033 4.033 16 Cl -0.018 7.018 17 C -0.133 4.133 18 C -0.078 4.078 19 C -0.135 4.135 20 C -0.038 4.038 21 Cl -0.025 7.025 22 H 0.084 0.916 23 H 0.079 0.921 24 H 0.078 0.922 25 H 0.017 0.983 26 H 0.032 0.968 27 H 0.071 0.929 28 H 0.189 0.811 29 H 0.207 0.793 30 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -7.621 7.864 18.723 21.690 hybrid contribution 0.492 0.629 -0.896 1.200 sum -7.129 8.493 17.827 20.994 Atomic orbital electron populations 1.22080 0.92705 1.02506 1.01829 1.23277 0.98148 1.00356 0.94772 0.91478 1.18792 0.95617 0.94270 0.90265 1.21554 0.92755 1.33729 1.07748 0.91859 1.25787 1.02871 0.95135 0.95429 1.70073 1.37251 1.37176 1.12844 0.85643 0.80596 0.78832 0.77246 1.20206 1.20649 1.19014 1.86008 1.74633 1.33834 0.97007 1.21979 0.96983 1.01573 1.03709 1.21379 0.91031 0.93197 0.97647 1.98393 1.66316 1.48550 1.88545 1.21592 1.02439 0.94507 0.94747 1.21714 0.91415 0.95882 0.98811 1.21573 0.98239 0.99478 0.94180 1.21465 0.88541 0.96553 0.97218 1.98419 1.26035 1.95375 1.82681 0.91636 0.92092 0.92167 0.98258 0.96823 0.92928 0.81135 0.79254 0.81571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.70 8.03 71.98 0.58 -4.12 16 2 C -0.04 -1.62 2.74 30.59 0.08 -1.53 16 3 H 0.07 2.93 8.14 -2.39 -0.02 2.92 16 4 C 0.05 2.59 4.45 29.85 0.13 2.72 16 5 C -0.52 -29.81 8.53 25.60 0.22 -29.59 16 6 H 0.06 3.59 7.60 -2.91 -0.02 3.57 16 7 C 0.01 0.31 5.46 84.65 0.46 0.77 16 8 N -0.93 -57.30 13.29 21.45 0.28 -57.02 16 9 Si 0.95 45.91 29.54 68.60 2.03 47.93 16 10 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 11 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 12 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 13 S -0.15 -6.10 18.23 -56.49 -1.03 -7.13 16 14 C -0.13 -4.13 5.25 22.65 0.12 -4.01 16 15 C 0.00 -0.07 5.51 22.45 0.12 0.06 16 16 Cl -0.05 -1.28 25.70 -2.72 -0.07 -1.35 16 17 C -0.11 -1.93 9.82 22.28 0.22 -1.71 16 18 C -0.06 -0.80 10.04 22.30 0.22 -0.58 16 19 C -0.11 -2.13 9.82 22.27 0.22 -1.91 16 20 C -0.01 -0.22 6.34 22.45 0.14 -0.08 16 21 Cl -0.05 -1.75 27.84 -2.72 -0.08 -1.82 16 22 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 23 H 0.06 2.19 7.86 -2.39 -0.02 2.18 16 24 H 0.06 1.89 6.09 -2.39 -0.01 1.87 16 25 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 26 H 0.01 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 28 H 0.17 1.85 8.06 -2.91 -0.02 1.83 16 29 H 0.19 0.76 8.06 -2.91 -0.02 0.73 16 30 H 0.17 2.17 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -68.14 298.51 4.80 -63.34 By element: Atomic # 1 Polarization: -5.11 SS G_CDS: 1.15 Total: -3.96 kcal Atomic # 6 Polarization: -42.50 SS G_CDS: 2.52 Total: -39.98 kcal Atomic # 7 Polarization: -57.30 SS G_CDS: 0.28 Total: -57.02 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.93 kcal Atomic # 16 Polarization: -6.10 SS G_CDS: -1.03 Total: -7.13 kcal Atomic # 17 Polarization: -3.03 SS G_CDS: -0.15 Total: -3.18 kcal Total: -68.14 4.80 -63.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000470441215.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.715 kcal (2) G-P(sol) polarization free energy of solvation -68.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds