Wall clock time and date at job start Tue Mar 31 2020 06:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47676 * 2 1 4 4 C 1.53005 * 109.47336 * 239.99596 * 2 1 3 5 5 C 1.50702 * 109.47219 * 175.00113 * 4 2 1 6 6 H 1.07996 * 119.99567 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99745 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00063 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99662 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47024 * 60.00258 * 9 7 5 11 11 H 1.48499 * 109.46920 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47130 * 299.99890 * 9 7 5 13 13 S 1.81403 * 109.47008 * 120.00064 * 2 1 3 14 14 C 1.76199 * 102.99807 * 289.25785 * 13 2 1 15 15 C 1.38923 * 120.07564 * 354.30064 * 14 13 2 16 16 C 1.38214 * 119.91662 * 179.97438 * 15 14 13 17 17 Cl 1.73604 * 119.95990 * 179.97438 * 16 15 14 18 18 C 1.38417 * 120.07419 * 0.02764 * 16 15 14 19 19 C 1.38271 * 120.15423 * 359.94641 * 18 16 15 20 20 C 1.38190 * 120.08085 * 0.03066 * 19 18 16 21 21 Cl 1.73600 * 120.03638 * 179.97438 * 20 19 18 22 22 H 1.09003 * 109.47130 * 174.40253 * 1 2 3 23 23 H 1.08998 * 109.47120 * 294.40562 * 1 2 3 24 24 H 1.08998 * 109.46683 * 54.40991 * 1 2 3 25 25 H 1.08998 * 109.47416 * 295.00801 * 4 2 1 26 26 H 1.09006 * 109.46426 * 55.00493 * 4 2 1 27 27 H 0.97001 * 119.99988 * 179.97438 * 8 7 5 28 28 H 1.07998 * 120.04177 * 0.25141 * 15 14 13 29 29 H 1.08000 * 119.92243 * 179.97438 * 18 16 15 30 30 H 1.08007 * 119.95811 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5420 -0.6150 -1.3127 6 1 4.0790 -0.0862 -0.5391 7 6 4.2304 -1.1928 -2.3582 8 7 3.5763 -1.8363 -3.3004 9 14 6.0922 -1.0616 -2.4365 10 1 6.6838 -1.6886 -1.2274 11 1 6.5870 -1.7606 -3.6496 12 1 6.4855 0.3691 -2.4950 13 16 2.1346 -0.8552 1.4811 14 6 1.7329 0.2673 2.7786 15 6 1.2082 1.5183 2.4793 16 6 0.8937 2.3960 3.4996 17 17 0.2386 3.9599 3.1269 18 6 1.1015 2.0298 4.8182 19 6 1.6231 0.7852 5.1196 20 6 1.9393 -0.0975 4.1044 21 17 2.5947 -1.6596 4.4840 22 1 -0.3633 -1.0228 -0.1002 23 1 -0.3633 0.4246 0.9358 24 1 -0.3632 0.5981 -0.8357 25 1 1.7516 -1.7716 -1.2056 26 1 1.6054 -0.2617 -2.1370 27 1 4.0606 -2.2425 -4.0362 28 1 1.0421 1.8030 1.4509 29 1 0.8553 2.7177 5.6136 30 1 1.7835 0.5026 6.1496 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000470452773.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:13 Heat of formation + Delta-G solvation = -7.831821 kcal Electronic energy + Delta-G solvation = -15950.980553 eV Core-core repulsion = 13116.440793 eV Total energy + Delta-G solvation = -2834.539760 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 289.999 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.25602 -36.77247 -36.18254 -34.79304 -32.33175 -31.17933 -30.41144 -27.56194 -23.42426 -23.21958 -22.90654 -20.60295 -17.92791 -16.47468 -16.38557 -15.88437 -15.31340 -14.69968 -14.46595 -14.10364 -14.01994 -12.93181 -12.76159 -12.47747 -12.38206 -12.09185 -11.84860 -11.68722 -11.27196 -11.08569 -10.97620 -10.87324 -10.86521 -10.59069 -10.42202 -9.77708 -9.58561 -9.39277 -9.21078 -8.73434 -8.42753 -7.00698 -6.07994 -4.10417 0.87555 1.03757 1.83304 1.92595 2.27941 3.00901 3.32169 3.33719 3.36103 3.39869 4.41738 4.60235 4.88344 5.13377 5.20327 5.29605 5.48296 5.55209 5.59953 5.73439 5.84243 5.97637 6.01630 6.20782 6.40794 6.47692 6.56352 7.41664 7.48379 7.88330 8.23688 8.93615 9.54240 11.03051 Molecular weight = 290.00amu Principal moments of inertia in cm(-1) A = 0.016147 B = 0.005228 C = 0.004524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.606781 B = 5354.035024 C = 6188.241721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.078 4.078 3 H 0.084 0.916 4 C 0.041 3.959 5 C -0.523 4.523 6 H 0.062 0.938 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.892 3.108 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.276 1.276 13 S -0.033 6.033 14 C -0.068 4.068 15 C -0.124 4.124 16 C -0.009 4.009 17 Cl -0.069 7.069 18 C -0.125 4.125 19 C -0.079 4.079 20 C -0.032 4.032 21 Cl -0.051 7.051 22 H 0.065 0.935 23 H 0.048 0.952 24 H 0.064 0.936 25 H 0.028 0.972 26 H 0.038 0.962 27 H 0.262 0.738 28 H 0.147 0.853 29 H 0.139 0.861 30 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.733 6.653 15.561 18.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.207 4.207 3 H 0.102 0.898 4 C 0.003 3.997 5 C -0.561 4.561 6 H 0.080 0.920 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.719 3.281 10 H -0.200 1.200 11 H -0.213 1.213 12 H -0.202 1.202 13 S 0.218 5.782 14 C -0.184 4.184 15 C -0.149 4.149 16 C -0.038 4.038 17 Cl -0.040 7.040 18 C -0.148 4.148 19 C -0.100 4.100 20 C -0.067 4.067 21 Cl -0.021 7.021 22 H 0.084 0.916 23 H 0.067 0.933 24 H 0.083 0.917 25 H 0.046 0.954 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.164 0.836 29 H 0.156 0.844 30 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -6.128 5.359 15.253 17.290 hybrid contribution 0.450 1.350 -0.207 1.438 sum -5.678 6.709 15.046 17.425 Atomic orbital electron populations 1.22177 0.94471 1.02957 1.01234 1.23903 0.97028 1.02563 0.97198 0.89778 1.19028 0.96603 0.95618 0.88500 1.21178 0.91366 1.35119 1.08433 0.91952 1.24964 0.98524 0.95030 0.95504 1.69938 1.35801 1.35602 1.11967 0.86647 0.85579 0.78325 0.77516 1.19962 1.21284 1.20191 1.86326 1.72007 1.24036 0.95805 1.22245 1.00275 0.98366 0.97473 1.21176 1.01711 0.92085 0.99975 1.20857 1.00860 0.87585 0.94467 1.98371 1.84429 1.26255 1.94926 1.20849 1.02375 0.96902 0.94714 1.20864 0.98110 0.92302 0.98713 1.20447 1.04391 0.89259 0.92561 1.98378 1.84131 1.25614 1.94023 0.91595 0.93313 0.91711 0.95379 0.94384 0.92793 0.83582 0.84359 0.84081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 8.72 37.16 0.32 -2.07 16 2 C -0.08 -1.51 1.98 -26.73 -0.05 -1.56 16 3 H 0.08 1.60 6.81 -51.93 -0.35 1.25 16 4 C 0.04 0.99 4.45 -27.88 -0.12 0.86 16 5 C -0.52 -14.07 8.53 -34.44 -0.29 -14.36 16 6 H 0.06 1.66 7.60 -52.49 -0.40 1.26 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -26.01 13.29 55.43 0.74 -25.27 16 9 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 S -0.03 -0.63 19.51 -107.50 -2.10 -2.73 16 14 C -0.07 -1.09 5.99 -39.03 -0.23 -1.32 16 15 C -0.12 -1.81 7.86 -39.34 -0.31 -2.12 16 16 C -0.01 -0.11 6.32 -39.52 -0.25 -0.36 16 17 Cl -0.07 -0.79 28.95 -51.86 -1.50 -2.30 16 18 C -0.13 -1.38 9.83 -39.50 -0.39 -1.77 16 19 C -0.08 -0.91 9.82 -39.59 -0.39 -1.30 16 20 C -0.03 -0.45 6.34 -39.30 -0.25 -0.70 16 21 Cl -0.05 -0.72 27.83 -51.86 -1.44 -2.16 16 22 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 23 H 0.05 0.70 6.19 -51.93 -0.32 0.38 16 24 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 25 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 28 H 0.15 2.16 4.99 -52.49 -0.26 1.90 16 29 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 30 H 0.14 1.22 8.06 -52.48 -0.42 0.80 16 LS Contribution 298.30 15.07 4.50 4.50 Total: -1.00 -28.17 298.30 -9.90 -38.07 By element: Atomic # 1 Polarization: -0.43 SS G_CDS: -3.01 Total: -3.44 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: -2.06 Total: -23.08 kcal Atomic # 7 Polarization: -26.01 SS G_CDS: 0.74 Total: -25.27 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -0.63 SS G_CDS: -2.10 Total: -2.73 kcal Atomic # 17 Polarization: -1.51 SS G_CDS: -2.94 Total: -4.46 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.17 -9.90 -38.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000470452773.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.243 kcal (2) G-P(sol) polarization free energy of solvation -28.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds