Wall clock time and date at job start Tue Mar 31 2020 06:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47676 * 2 1 4 4 C 1.53005 * 109.47336 * 239.99596 * 2 1 3 5 5 C 1.50702 * 109.47219 * 175.00113 * 4 2 1 6 6 H 1.07996 * 119.99567 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99745 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00063 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99662 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47024 * 60.00258 * 9 7 5 11 11 H 1.48499 * 109.46920 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47130 * 299.99890 * 9 7 5 13 13 S 1.81403 * 109.47008 * 120.00064 * 2 1 3 14 14 C 1.76199 * 102.99807 * 289.25785 * 13 2 1 15 15 C 1.38923 * 120.07564 * 354.30064 * 14 13 2 16 16 C 1.38214 * 119.91662 * 179.97438 * 15 14 13 17 17 Cl 1.73604 * 119.95990 * 179.97438 * 16 15 14 18 18 C 1.38417 * 120.07419 * 0.02764 * 16 15 14 19 19 C 1.38271 * 120.15423 * 359.94641 * 18 16 15 20 20 C 1.38190 * 120.08085 * 0.03066 * 19 18 16 21 21 Cl 1.73600 * 120.03638 * 179.97438 * 20 19 18 22 22 H 1.09003 * 109.47130 * 174.40253 * 1 2 3 23 23 H 1.08998 * 109.47120 * 294.40562 * 1 2 3 24 24 H 1.08998 * 109.46683 * 54.40991 * 1 2 3 25 25 H 1.08998 * 109.47416 * 295.00801 * 4 2 1 26 26 H 1.09006 * 109.46426 * 55.00493 * 4 2 1 27 27 H 0.97001 * 119.99988 * 179.97438 * 8 7 5 28 28 H 1.07998 * 120.04177 * 0.25141 * 15 14 13 29 29 H 1.08000 * 119.92243 * 179.97438 * 18 16 15 30 30 H 1.08007 * 119.95811 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5420 -0.6150 -1.3127 6 1 4.0790 -0.0862 -0.5391 7 6 4.2304 -1.1928 -2.3582 8 7 3.5763 -1.8363 -3.3004 9 14 6.0922 -1.0616 -2.4365 10 1 6.6838 -1.6886 -1.2274 11 1 6.5870 -1.7606 -3.6496 12 1 6.4855 0.3691 -2.4950 13 16 2.1346 -0.8552 1.4811 14 6 1.7329 0.2673 2.7786 15 6 1.2082 1.5183 2.4793 16 6 0.8937 2.3960 3.4996 17 17 0.2386 3.9599 3.1269 18 6 1.1015 2.0298 4.8182 19 6 1.6231 0.7852 5.1196 20 6 1.9393 -0.0975 4.1044 21 17 2.5947 -1.6596 4.4840 22 1 -0.3633 -1.0228 -0.1002 23 1 -0.3633 0.4246 0.9358 24 1 -0.3632 0.5981 -0.8357 25 1 1.7516 -1.7716 -1.2056 26 1 1.6054 -0.2617 -2.1370 27 1 4.0606 -2.2425 -4.0362 28 1 1.0421 1.8030 1.4509 29 1 0.8553 2.7177 5.6136 30 1 1.7835 0.5026 6.1496 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000470452773.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:12 Heat of formation + Delta-G solvation = -20.710992 kcal Electronic energy + Delta-G solvation = -15951.539036 eV Core-core repulsion = 13116.440793 eV Total energy + Delta-G solvation = -2835.098243 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 289.999 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.29490 -37.78678 -37.22368 -36.52598 -34.21007 -32.32977 -31.44967 -29.38570 -25.29075 -24.25694 -24.04027 -22.18082 -19.07054 -18.50811 -17.62680 -16.99836 -16.58343 -16.53912 -15.75068 -15.29657 -15.10377 -14.60842 -14.21474 -13.64244 -13.54157 -13.48037 -13.34209 -13.10048 -12.75782 -12.65217 -12.44137 -12.40024 -12.05687 -12.01450 -11.79170 -11.51149 -11.27439 -10.84089 -10.77726 -10.52540 -9.77008 -8.40100 -8.20642 -6.28772 -0.16927 0.00968 0.51348 0.92563 1.14814 1.39788 1.41898 1.49362 1.65152 2.31658 2.40796 3.14760 3.60257 3.96610 3.98860 4.10902 4.12313 4.17584 4.44326 4.59000 4.69921 4.82841 4.91439 4.99011 5.05540 5.15877 5.37005 5.45340 5.48270 5.76283 6.16766 6.82711 7.39136 8.90764 Molecular weight = 290.00amu Principal moments of inertia in cm(-1) A = 0.016147 B = 0.005228 C = 0.004524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.606781 B = 5354.035024 C = 6188.241721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.064 4.064 3 H 0.084 0.916 4 C 0.047 3.953 5 C -0.530 4.530 6 H 0.061 0.939 7 C 0.008 3.992 8 N -0.930 5.930 9 Si 0.953 3.047 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.267 1.267 13 S -0.088 6.088 14 C -0.080 4.080 15 C -0.131 4.131 16 C -0.014 4.014 17 Cl -0.056 7.056 18 C -0.106 4.106 19 C -0.070 4.070 20 C -0.040 4.040 21 Cl -0.056 7.056 22 H 0.060 0.940 23 H 0.067 0.933 24 H 0.075 0.925 25 H 0.001 0.999 26 H 0.019 0.981 27 H 0.263 0.737 28 H 0.140 0.860 29 H 0.175 0.825 30 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.791 8.348 18.024 20.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.193 4.193 3 H 0.102 0.898 4 C 0.009 3.991 5 C -0.568 4.568 6 H 0.079 0.921 7 C -0.190 4.190 8 N -0.570 5.570 9 Si 0.778 3.222 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.192 1.192 13 S 0.161 5.839 14 C -0.195 4.195 15 C -0.157 4.157 16 C -0.043 4.043 17 Cl -0.027 7.027 18 C -0.128 4.128 19 C -0.090 4.090 20 C -0.075 4.075 21 Cl -0.027 7.027 22 H 0.079 0.921 23 H 0.086 0.914 24 H 0.093 0.907 25 H 0.019 0.981 26 H 0.037 0.963 27 H 0.072 0.928 28 H 0.157 0.843 29 H 0.193 0.807 30 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -6.197 7.085 17.742 20.084 hybrid contribution 0.402 0.924 -0.821 1.300 sum -5.795 8.009 16.921 19.597 Atomic orbital electron populations 1.22094 0.92039 1.03082 1.02665 1.23586 0.98924 1.01455 0.95317 0.89819 1.18811 0.95469 0.94418 0.90430 1.21519 0.92864 1.34401 1.08054 0.92056 1.25789 1.03028 0.94893 0.95326 1.70055 1.37485 1.36801 1.12680 0.85674 0.80285 0.78684 0.77546 1.19620 1.20841 1.19216 1.86307 1.74079 1.26063 0.97418 1.21998 1.02593 0.98241 0.96696 1.21157 1.02067 0.92097 1.00374 1.20978 1.00707 0.87843 0.94784 1.98382 1.84172 1.25208 1.94984 1.21307 0.99733 0.96932 0.94788 1.21265 0.96540 0.91620 0.99564 1.20702 1.04540 0.89643 0.92570 1.98378 1.84254 1.26152 1.93895 0.92066 0.91410 0.90664 0.98066 0.96317 0.92788 0.84287 0.80750 0.80695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.49 8.72 71.98 0.63 -3.86 16 2 C -0.06 -2.53 1.98 30.60 0.06 -2.47 16 3 H 0.08 3.24 6.81 -2.39 -0.02 3.23 16 4 C 0.05 2.36 4.45 29.85 0.13 2.50 16 5 C -0.53 -29.27 8.53 25.60 0.22 -29.05 16 6 H 0.06 3.33 7.60 -2.91 -0.02 3.31 16 7 C 0.01 0.44 5.46 84.65 0.46 0.91 16 8 N -0.93 -55.54 13.29 21.45 0.28 -55.26 16 9 Si 0.95 44.42 29.54 68.60 2.03 46.45 16 10 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 12 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 13 S -0.09 -3.37 19.51 -56.49 -1.10 -4.47 16 14 C -0.08 -2.49 5.99 22.63 0.14 -2.35 16 15 C -0.13 -3.65 7.86 22.43 0.18 -3.48 16 16 C -0.01 -0.32 6.32 22.31 0.14 -0.18 16 17 Cl -0.06 -1.15 28.95 -2.72 -0.08 -1.22 16 18 C -0.11 -1.86 9.83 22.32 0.22 -1.64 16 19 C -0.07 -1.33 9.82 22.27 0.22 -1.11 16 20 C -0.04 -1.07 6.34 22.45 0.14 -0.93 16 21 Cl -0.06 -1.53 27.83 -2.72 -0.08 -1.60 16 22 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 23 H 0.07 1.90 6.19 -2.39 -0.01 1.89 16 24 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 25 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 26 H 0.02 1.00 8.14 -2.38 -0.02 0.98 16 27 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 28 H 0.14 4.00 4.99 -2.91 -0.01 3.98 16 29 H 0.18 1.88 8.06 -2.91 -0.02 1.85 16 30 H 0.18 2.16 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -61.94 298.30 4.75 -57.20 By element: Atomic # 1 Polarization: -0.57 SS G_CDS: 1.16 Total: 0.59 kcal Atomic # 6 Polarization: -44.20 SS G_CDS: 2.53 Total: -41.67 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: 0.28 Total: -55.26 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: -3.37 SS G_CDS: -1.10 Total: -4.47 kcal Atomic # 17 Polarization: -2.67 SS G_CDS: -0.15 Total: -2.83 kcal Total: -61.94 4.75 -57.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000470452773.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.487 kcal (2) G-P(sol) polarization free energy of solvation -61.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds