Wall clock time and date at job start Tue Mar 31 2020 05:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99887 * 2 1 3 5 5 C 1.38252 * 119.99720 * 59.72795 * 4 2 1 6 6 C 1.38215 * 120.00131 * 179.78513 * 5 4 2 7 7 C 1.38256 * 119.99785 * 0.44531 * 6 5 4 8 8 C 1.38218 * 119.99916 * 359.80827 * 7 6 5 9 9 C 1.50697 * 120.00182 * 179.97438 * 8 7 6 10 10 N 1.46902 * 109.47357 * 269.98018 * 9 8 7 11 11 C 1.46898 * 111.00126 * 179.97438 * 10 9 8 12 12 C 1.53001 * 109.47242 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.46913 * 299.99801 * 12 11 10 14 14 C 1.52999 * 109.46879 * 59.99772 * 12 11 10 15 15 C 1.52999 * 109.47129 * 179.97438 * 12 11 10 16 16 C 1.50699 * 109.46942 * 180.02562 * 15 12 11 17 17 H 1.07999 * 120.00208 * 359.97438 * 16 15 12 18 18 C 1.37876 * 120.00013 * 180.02562 * 16 15 12 19 19 N 1.31518 * 119.99870 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00154 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47393 * 59.99757 * 20 18 16 22 22 H 1.48503 * 109.47409 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47149 * 299.99630 * 20 18 16 24 24 C 1.38211 * 119.99877 * 240.00123 * 4 2 1 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 30 30 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 32 32 H 1.08009 * 120.00167 * 0.02562 * 5 4 2 33 33 H 1.08001 * 120.00179 * 180.27182 * 6 5 4 34 34 H 1.07999 * 120.00233 * 179.83003 * 7 6 5 35 35 H 1.09001 * 109.47264 * 29.97935 * 9 8 7 36 36 H 1.09003 * 109.47351 * 149.97905 * 9 8 7 37 37 H 1.00899 * 111.00116 * 56.04159 * 10 9 8 38 38 H 1.09001 * 109.47087 * 300.00004 * 11 10 9 39 39 H 1.09001 * 109.47050 * 59.99839 * 11 10 9 40 40 H 1.09004 * 109.47186 * 60.00081 * 13 12 11 41 41 H 1.09001 * 109.46602 * 179.97438 * 13 12 11 42 42 H 1.09001 * 109.47285 * 300.00115 * 13 12 11 43 43 H 1.08996 * 109.47428 * 60.00562 * 14 12 11 44 44 H 1.09003 * 109.46889 * 179.97438 * 14 12 11 45 45 H 1.08996 * 109.47589 * 300.00152 * 14 12 11 46 46 H 1.09001 * 109.47156 * 299.99966 * 15 12 11 47 47 H 1.09001 * 109.47093 * 59.99870 * 15 12 11 48 48 H 0.97006 * 119.99828 * 180.02562 * 19 18 16 49 49 H 1.07991 * 120.00370 * 359.97438 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 6 1.6937 -0.2414 -2.4862 6 6 2.1580 -0.8903 -3.6147 7 6 2.9536 -2.0139 -3.4879 8 6 3.2878 -2.4859 -2.2326 9 6 4.1545 -3.7109 -2.0943 10 7 3.3055 -4.9089 -2.0486 11 6 4.1181 -6.1253 -1.9144 12 6 3.2009 -7.3491 -1.8710 13 6 2.2535 -7.2342 -0.6751 14 6 2.3848 -7.4209 -3.1631 15 6 4.0473 -8.6161 -1.7319 16 6 3.1439 -9.8215 -1.6897 17 1 2.0732 -9.6965 -1.7551 18 6 3.6843 -11.0840 -1.5666 19 7 4.9881 -11.2362 -1.4864 20 14 2.5646 -12.5783 -1.5151 21 1 1.7733 -12.6475 -2.7698 22 1 3.3860 -13.8079 -1.3787 23 1 1.6442 -12.4674 -0.3550 24 6 2.8269 -1.8342 -1.1036 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.6768 1.9562 0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.0694 0.6344 -2.5853 33 1 1.8971 -0.5213 -4.5956 34 1 3.3142 -2.5226 -4.3697 35 1 4.8297 -3.7765 -2.9475 36 1 4.7362 -3.6426 -1.1750 37 1 2.7090 -4.9606 -2.8608 38 1 4.7927 -6.2073 -2.7666 39 1 4.6998 -6.0739 -0.9941 40 1 1.6505 -6.3316 -0.7746 41 1 1.5998 -8.1059 -0.6444 42 1 2.8350 -7.1830 0.2455 43 1 3.0596 -7.5028 -4.0151 44 1 1.7317 -8.2930 -3.1324 45 1 1.7818 -6.5183 -3.2627 46 1 4.7219 -8.6977 -2.5841 47 1 4.6291 -8.5651 -0.8115 48 1 5.3683 -12.1245 -1.4002 49 1 3.0881 -2.2029 -0.1228 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000479388818.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:16 Heat of formation + Delta-G solvation = -13.007817 kcal Electronic energy + Delta-G solvation = -22742.726449 eV Core-core repulsion = 19667.984095 eV Total energy + Delta-G solvation = -3074.742354 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.79790 -37.64922 -35.89029 -34.18798 -32.29423 -30.87756 -29.90045 -27.38090 -27.05427 -26.31161 -26.06150 -24.27210 -23.14153 -22.24177 -21.86141 -19.53987 -17.85929 -16.75374 -16.22765 -15.95299 -15.43372 -14.88169 -14.65025 -14.29720 -14.20563 -13.91820 -13.70879 -13.63616 -13.03264 -12.82174 -12.70771 -12.51752 -12.21736 -12.13207 -12.03473 -11.96215 -11.69118 -11.36381 -11.27068 -10.96582 -10.86078 -10.78287 -10.75317 -10.72949 -10.46283 -10.23479 -10.11135 -9.65798 -9.04438 -8.86555 -8.79884 -8.68508 -8.29609 -8.04740 -5.94351 -3.94395 1.28406 1.36228 3.36010 3.40506 3.42870 3.66582 4.43923 4.48975 4.56827 4.66217 4.92522 4.93254 4.97202 5.06114 5.14011 5.34979 5.36995 5.41144 5.41341 5.46124 5.57328 5.63403 5.67879 5.74030 5.78302 5.82670 5.92406 6.00392 6.01101 6.04356 6.06129 6.26929 6.35563 6.41428 6.53281 6.53546 6.63616 6.69593 6.81507 6.85753 6.96069 7.23334 7.24595 7.28863 7.41627 7.68736 7.73183 7.87944 8.05998 8.50532 9.10746 9.68195 11.17305 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.028537 B = 0.002685 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.930878 B =10425.839745 C =10723.099736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.057 4.057 3 C -0.143 4.143 4 C -0.079 4.079 5 C -0.119 4.119 6 C -0.120 4.120 7 C -0.120 4.120 8 C -0.071 4.071 9 C 0.094 3.906 10 N -0.680 5.680 11 C 0.069 3.931 12 C -0.058 4.058 13 C -0.116 4.116 14 C -0.129 4.129 15 C 0.034 3.966 16 C -0.507 4.507 17 H 0.058 0.942 18 C 0.054 3.946 19 N -0.898 5.898 20 Si 0.888 3.112 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.277 1.277 24 C -0.095 4.095 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.034 0.966 36 H 0.077 0.923 37 H 0.339 0.661 38 H 0.023 0.977 39 H 0.066 0.934 40 H 0.042 0.958 41 H 0.054 0.946 42 H 0.039 0.961 43 H 0.040 0.960 44 H 0.064 0.936 45 H 0.033 0.967 46 H 0.012 0.988 47 H 0.015 0.985 48 H 0.259 0.741 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.520 24.498 -0.752 25.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.076 4.076 3 C -0.200 4.200 4 C -0.079 4.079 5 C -0.138 4.138 6 C -0.138 4.138 7 C -0.139 4.139 8 C -0.072 4.072 9 C -0.034 4.034 10 N -0.312 5.312 11 C -0.059 4.059 12 C -0.058 4.058 13 C -0.173 4.173 14 C -0.186 4.186 15 C -0.004 4.004 16 C -0.545 4.545 17 H 0.076 0.924 18 C -0.146 4.146 19 N -0.538 5.538 20 Si 0.716 3.284 21 H -0.204 1.204 22 H -0.215 1.215 23 H -0.203 1.203 24 C -0.114 4.114 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.134 0.866 33 H 0.136 0.864 34 H 0.135 0.865 35 H 0.052 0.948 36 H 0.096 0.904 37 H 0.158 0.842 38 H 0.041 0.959 39 H 0.085 0.915 40 H 0.061 0.939 41 H 0.073 0.927 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.083 0.917 45 H 0.052 0.948 46 H 0.031 0.969 47 H 0.033 0.967 48 H 0.069 0.931 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.489 24.401 -0.056 25.011 hybrid contribution -0.067 -1.068 -0.952 1.432 sum -5.556 23.333 -1.007 24.007 Atomic orbital electron populations 1.21852 0.94347 1.02236 1.01665 1.20125 0.95980 0.95878 0.95604 1.21849 1.01205 0.95235 1.01732 1.19836 0.97719 0.95773 0.94564 1.20897 1.00609 1.00193 0.92052 1.21053 0.98277 0.96092 0.98349 1.21048 0.99034 0.96882 0.96913 1.19852 0.98201 0.96126 0.93001 1.20897 0.93464 0.88005 1.01081 1.60627 1.22429 1.01163 1.46999 1.22139 0.94931 0.88979 0.99877 1.20621 0.95649 0.94516 0.95008 1.21595 0.98772 1.00063 0.96864 1.21771 0.99570 1.00291 0.97016 1.19123 0.94423 0.89988 0.96842 1.21202 0.93192 0.90934 1.49171 0.92355 1.25017 0.94869 0.98999 0.95729 1.69961 1.10250 1.22656 1.50937 0.86724 0.80687 0.82439 0.78532 1.20367 1.21454 1.20315 1.20947 0.97339 0.94617 0.98468 0.92609 0.92502 0.92299 0.90413 0.92494 0.92579 0.92585 0.86561 0.86382 0.86482 0.94797 0.90436 0.84168 0.95858 0.91527 0.93886 0.92741 0.94203 0.94134 0.91716 0.94816 0.96932 0.96676 0.93127 0.86034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.00 37.16 0.33 -0.78 16 2 C -0.06 -0.48 3.09 -91.77 -0.28 -0.77 16 3 C -0.14 -1.02 9.01 37.15 0.33 -0.69 16 4 C -0.08 -0.81 4.78 -104.62 -0.50 -1.31 16 5 C -0.12 -1.16 8.71 -39.58 -0.34 -1.51 16 6 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 7 C -0.12 -1.33 9.70 -39.58 -0.38 -1.71 16 8 C -0.07 -0.86 5.39 -104.62 -0.56 -1.42 16 9 C 0.09 1.21 5.81 -4.98 -0.03 1.18 16 10 N -0.68 -10.13 5.70 -115.06 -0.66 -10.78 16 11 C 0.07 1.21 4.65 -3.82 -0.02 1.19 16 12 C -0.06 -1.16 0.60 -154.51 -0.09 -1.25 16 13 C -0.12 -2.28 8.06 37.16 0.30 -1.98 16 14 C -0.13 -2.44 7.89 37.16 0.29 -2.14 16 15 C 0.03 0.86 4.04 -27.88 -0.11 0.74 16 16 C -0.51 -13.96 7.65 -34.44 -0.26 -14.22 16 17 H 0.06 1.56 5.68 -52.49 -0.30 1.27 16 18 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 19 N -0.90 -27.01 13.29 55.43 0.74 -26.28 16 20 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 C -0.10 -1.10 9.33 -39.58 -0.37 -1.47 16 25 H 0.05 0.41 7.37 -51.93 -0.38 0.02 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.08 0.66 7.88 -51.93 -0.41 0.25 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.38 7.40 -51.93 -0.38 -0.01 16 32 H 0.12 0.93 7.10 -52.48 -0.37 0.56 16 33 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.03 0.42 8.09 -51.93 -0.42 0.00 16 36 H 0.08 0.98 8.09 -51.93 -0.42 0.56 16 37 H 0.34 4.97 6.76 -39.29 -0.27 4.71 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.04 0.77 7.60 -51.93 -0.39 0.38 16 41 H 0.05 1.14 6.62 -51.93 -0.34 0.80 16 42 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.06 1.32 6.62 -51.93 -0.34 0.98 16 45 H 0.03 0.55 6.57 -51.93 -0.34 0.21 16 46 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 49 H 0.12 1.36 7.94 -52.49 -0.42 0.94 16 LS Contribution 382.65 15.07 5.77 5.77 Total: -1.00 -29.39 382.65 -10.37 -39.76 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -9.00 Total: 1.11 kcal Atomic # 6 Polarization: -24.10 SS G_CDS: -2.20 Total: -26.29 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 0.08 Total: -37.06 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.39 -10.37 -39.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000479388818.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.750 kcal (2) G-P(sol) polarization free energy of solvation -29.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds