Wall clock time and date at job start Tue Mar 31 2020 05:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99887 * 2 1 3 5 5 C 1.38252 * 119.99720 * 59.72795 * 4 2 1 6 6 C 1.38215 * 120.00131 * 179.78513 * 5 4 2 7 7 C 1.38256 * 119.99785 * 0.44531 * 6 5 4 8 8 C 1.38218 * 119.99916 * 359.80827 * 7 6 5 9 9 C 1.50697 * 120.00182 * 179.97438 * 8 7 6 10 10 N 1.46902 * 109.47357 * 269.98018 * 9 8 7 11 11 C 1.46898 * 111.00126 * 179.97438 * 10 9 8 12 12 C 1.53001 * 109.47242 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.46913 * 299.99801 * 12 11 10 14 14 C 1.52999 * 109.46879 * 59.99772 * 12 11 10 15 15 C 1.52999 * 109.47129 * 179.97438 * 12 11 10 16 16 C 1.50699 * 109.46942 * 180.02562 * 15 12 11 17 17 H 1.07999 * 120.00208 * 359.97438 * 16 15 12 18 18 C 1.37876 * 120.00013 * 180.02562 * 16 15 12 19 19 N 1.31518 * 119.99870 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00154 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47393 * 59.99757 * 20 18 16 22 22 H 1.48503 * 109.47409 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47149 * 299.99630 * 20 18 16 24 24 C 1.38211 * 119.99877 * 240.00123 * 4 2 1 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 30 30 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 32 32 H 1.08009 * 120.00167 * 0.02562 * 5 4 2 33 33 H 1.08001 * 120.00179 * 180.27182 * 6 5 4 34 34 H 1.07999 * 120.00233 * 179.83003 * 7 6 5 35 35 H 1.09001 * 109.47264 * 29.97935 * 9 8 7 36 36 H 1.09003 * 109.47351 * 149.97905 * 9 8 7 37 37 H 1.00899 * 111.00116 * 56.04159 * 10 9 8 38 38 H 1.09001 * 109.47087 * 300.00004 * 11 10 9 39 39 H 1.09001 * 109.47050 * 59.99839 * 11 10 9 40 40 H 1.09004 * 109.47186 * 60.00081 * 13 12 11 41 41 H 1.09001 * 109.46602 * 179.97438 * 13 12 11 42 42 H 1.09001 * 109.47285 * 300.00115 * 13 12 11 43 43 H 1.08996 * 109.47428 * 60.00562 * 14 12 11 44 44 H 1.09003 * 109.46889 * 179.97438 * 14 12 11 45 45 H 1.08996 * 109.47589 * 300.00152 * 14 12 11 46 46 H 1.09001 * 109.47156 * 299.99966 * 15 12 11 47 47 H 1.09001 * 109.47093 * 59.99870 * 15 12 11 48 48 H 0.97006 * 119.99828 * 180.02562 * 19 18 16 49 49 H 1.07991 * 120.00370 * 359.97438 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 6 1.6937 -0.2414 -2.4862 6 6 2.1580 -0.8903 -3.6147 7 6 2.9536 -2.0139 -3.4879 8 6 3.2878 -2.4859 -2.2326 9 6 4.1545 -3.7109 -2.0943 10 7 3.3055 -4.9089 -2.0486 11 6 4.1181 -6.1253 -1.9144 12 6 3.2009 -7.3491 -1.8710 13 6 2.2535 -7.2342 -0.6751 14 6 2.3848 -7.4209 -3.1631 15 6 4.0473 -8.6161 -1.7319 16 6 3.1439 -9.8215 -1.6897 17 1 2.0732 -9.6965 -1.7551 18 6 3.6843 -11.0840 -1.5666 19 7 4.9881 -11.2362 -1.4864 20 14 2.5646 -12.5783 -1.5151 21 1 1.7733 -12.6475 -2.7698 22 1 3.3860 -13.8079 -1.3787 23 1 1.6442 -12.4674 -0.3550 24 6 2.8269 -1.8342 -1.1036 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.6768 1.9562 0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.0694 0.6344 -2.5853 33 1 1.8971 -0.5213 -4.5956 34 1 3.3142 -2.5226 -4.3697 35 1 4.8297 -3.7765 -2.9475 36 1 4.7362 -3.6426 -1.1750 37 1 2.7090 -4.9606 -2.8608 38 1 4.7927 -6.2073 -2.7666 39 1 4.6998 -6.0739 -0.9941 40 1 1.6505 -6.3316 -0.7746 41 1 1.5998 -8.1059 -0.6444 42 1 2.8350 -7.1830 0.2455 43 1 3.0596 -7.5028 -4.0151 44 1 1.7317 -8.2930 -3.1324 45 1 1.7818 -6.5183 -3.2627 46 1 4.7219 -8.6977 -2.5841 47 1 4.6291 -8.5651 -0.8115 48 1 5.3683 -12.1245 -1.4002 49 1 3.0881 -2.2029 -0.1228 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000479388818.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:15 Heat of formation + Delta-G solvation = -26.798905 kcal Electronic energy + Delta-G solvation = -22743.324475 eV Core-core repulsion = 19667.984095 eV Total energy + Delta-G solvation = -3075.340381 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.60863 -39.14502 -36.80882 -35.45499 -34.20800 -31.90233 -30.71988 -29.00230 -27.94686 -27.90430 -27.35974 -25.76333 -24.10839 -23.66683 -22.80031 -20.35341 -19.46846 -18.33022 -17.56142 -16.94850 -16.63430 -16.35218 -15.78914 -15.63218 -15.40199 -14.87954 -14.59058 -14.55506 -14.43424 -14.20485 -13.96942 -13.84539 -13.33110 -13.23397 -13.16708 -12.87253 -12.82947 -12.74663 -12.70273 -12.42611 -12.25948 -12.14676 -12.05313 -11.98369 -11.91822 -11.49389 -11.46722 -11.37344 -10.87003 -10.75341 -10.49811 -9.67830 -9.54248 -9.24916 -8.13761 -6.20805 0.46738 0.55562 1.40818 1.43145 1.50422 2.43864 2.82764 3.19954 3.46661 3.72326 3.87939 4.04437 4.11891 4.20723 4.22443 4.30663 4.36162 4.37548 4.40083 4.55784 4.62520 4.69432 4.73833 4.79511 4.81345 4.83915 4.95139 5.01017 5.01977 5.07210 5.14606 5.19570 5.21011 5.21184 5.28738 5.36988 5.42194 5.51171 5.53359 5.57680 5.63105 5.64709 5.74029 5.81382 5.86783 5.92558 6.04884 6.18834 6.36918 6.49695 6.93934 7.46343 8.98402 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.028537 B = 0.002685 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.930878 B =10425.839745 C =10723.099736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.058 4.058 3 C -0.140 4.140 4 C -0.082 4.082 5 C -0.121 4.121 6 C -0.122 4.122 7 C -0.130 4.130 8 C -0.084 4.084 9 C 0.098 3.902 10 N -0.677 5.677 11 C 0.082 3.918 12 C -0.054 4.054 13 C -0.106 4.106 14 C -0.122 4.122 15 C 0.040 3.960 16 C -0.515 4.515 17 H 0.065 0.935 18 C -0.005 4.005 19 N -0.938 5.938 20 Si 0.956 3.044 21 H -0.268 1.268 22 H -0.288 1.288 23 H -0.269 1.269 24 C -0.112 4.112 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.045 0.955 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.137 0.863 33 H 0.140 0.860 34 H 0.125 0.875 35 H 0.039 0.961 36 H 0.075 0.925 37 H 0.343 0.657 38 H 0.019 0.981 39 H 0.058 0.942 40 H 0.064 0.936 41 H 0.038 0.962 42 H 0.030 0.970 43 H 0.037 0.963 44 H 0.047 0.953 45 H 0.064 0.936 46 H -0.015 1.015 47 H -0.016 1.016 48 H 0.260 0.740 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.484 26.224 -1.308 27.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.077 4.077 3 C -0.197 4.197 4 C -0.082 4.082 5 C -0.139 4.139 6 C -0.139 4.139 7 C -0.149 4.149 8 C -0.085 4.085 9 C -0.030 4.030 10 N -0.309 5.309 11 C -0.047 4.047 12 C -0.054 4.054 13 C -0.163 4.163 14 C -0.179 4.179 15 C 0.002 3.998 16 C -0.553 4.553 17 H 0.083 0.917 18 C -0.201 4.201 19 N -0.579 5.579 20 Si 0.781 3.219 21 H -0.192 1.192 22 H -0.213 1.213 23 H -0.194 1.194 24 C -0.131 4.131 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.064 0.936 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.155 0.845 33 H 0.158 0.842 34 H 0.143 0.857 35 H 0.057 0.943 36 H 0.093 0.907 37 H 0.163 0.837 38 H 0.038 0.962 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.057 0.943 42 H 0.049 0.951 43 H 0.056 0.944 44 H 0.066 0.934 45 H 0.083 0.917 46 H 0.003 0.997 47 H 0.003 0.997 48 H 0.068 0.932 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.468 26.145 -0.614 27.198 hybrid contribution 0.563 -1.519 -0.772 1.795 sum -6.905 24.626 -1.386 25.613 Atomic orbital electron populations 1.21834 0.93701 1.01675 1.02638 1.20164 0.96455 0.96456 0.94616 1.21823 1.00808 0.94398 1.02647 1.20069 0.97139 0.95338 0.95681 1.21183 1.00367 1.00626 0.91690 1.21356 0.97510 0.95516 0.99566 1.21216 0.99393 0.97504 0.96746 1.19789 0.98906 0.96058 0.93717 1.20871 0.93477 0.87505 1.01186 1.60554 1.22368 1.00699 1.47283 1.21844 0.94359 0.89163 0.99373 1.20481 0.95571 0.93200 0.96182 1.21491 0.98349 1.00330 0.96147 1.21680 0.99273 1.01043 0.95923 1.19007 0.94200 0.92552 0.94019 1.21583 0.93780 0.91737 1.48177 0.91655 1.25924 0.96290 1.02391 0.95525 1.70106 1.12199 1.23337 1.52279 0.85632 0.78740 0.78412 0.79067 1.19250 1.21323 1.19375 1.21047 0.98241 0.95517 0.98265 0.91924 0.91279 0.93589 0.90900 0.91322 0.93187 0.91945 0.84548 0.84175 0.85694 0.94287 0.90690 0.83739 0.96244 0.92391 0.91682 0.94263 0.95086 0.94362 0.93396 0.91686 0.99694 0.99719 0.93157 0.86476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.00 71.98 0.65 -1.27 16 2 C -0.06 -0.89 3.09 -11.54 -0.04 -0.93 16 3 C -0.14 -1.71 9.01 71.98 0.65 -1.06 16 4 C -0.08 -1.56 4.78 -19.86 -0.09 -1.66 16 5 C -0.12 -2.06 8.71 22.27 0.19 -1.87 16 6 C -0.12 -2.13 10.05 22.27 0.22 -1.91 16 7 C -0.13 -2.65 9.70 22.27 0.22 -2.43 16 8 C -0.08 -1.93 5.39 -19.86 -0.11 -2.04 16 9 C 0.10 2.44 5.81 85.56 0.50 2.94 16 10 N -0.68 -19.41 5.70 -517.93 -2.95 -22.36 16 11 C 0.08 2.85 4.65 86.30 0.40 3.25 16 12 C -0.05 -2.18 0.60 -52.18 -0.03 -2.21 16 13 C -0.11 -4.13 8.06 71.98 0.58 -3.55 16 14 C -0.12 -4.48 7.89 71.98 0.57 -3.92 16 15 C 0.04 2.09 4.04 29.85 0.12 2.21 16 16 C -0.51 -28.78 7.65 25.60 0.20 -28.58 16 17 H 0.07 3.50 5.68 -2.91 -0.02 3.48 16 18 C 0.00 -0.27 5.46 84.65 0.46 0.20 16 19 N -0.94 -57.81 13.29 21.45 0.28 -57.53 16 20 Si 0.96 44.80 29.54 68.60 2.03 46.82 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 22 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 23 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 24 C -0.11 -2.51 9.33 22.27 0.21 -2.30 16 25 H 0.06 0.76 7.37 -2.39 -0.02 0.74 16 26 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.04 0.74 8.14 -2.38 -0.02 0.72 16 28 H 0.07 1.16 7.88 -2.39 -0.02 1.15 16 29 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 0.68 7.40 -2.39 -0.02 0.66 16 32 H 0.14 1.74 7.10 -2.91 -0.02 1.72 16 33 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 34 H 0.13 2.27 8.06 -2.91 -0.02 2.25 16 35 H 0.04 0.93 8.09 -2.39 -0.02 0.91 16 36 H 0.07 1.88 8.09 -2.39 -0.02 1.87 16 37 H 0.34 9.40 6.76 -89.69 -0.61 8.79 16 38 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.06 2.24 7.60 -2.38 -0.02 2.22 16 41 H 0.04 1.62 6.62 -2.39 -0.02 1.61 16 42 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.05 1.91 6.62 -2.39 -0.02 1.90 16 45 H 0.06 1.97 6.57 -2.39 -0.02 1.96 16 46 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 47 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 48 H 0.26 15.18 8.31 -92.70 -0.77 14.41 16 49 H 0.12 2.62 7.94 -2.92 -0.02 2.60 16 Total: -1.00 -63.56 382.65 4.34 -59.22 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 0.28 Total: 18.97 kcal Atomic # 6 Polarization: -49.82 SS G_CDS: 4.69 Total: -45.13 kcal Atomic # 7 Polarization: -77.22 SS G_CDS: -2.67 Total: -79.89 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -63.56 4.34 -59.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000479388818.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.421 kcal (2) G-P(sol) polarization free energy of solvation -63.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds