Wall clock time and date at job start Tue Mar 31 2020 06:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47095 * 2 1 4 4 H 1.08997 * 109.47397 * 56.11345 * 3 2 1 5 5 C 1.52998 * 109.46947 * 176.11831 * 3 2 1 6 6 C 1.50708 * 109.47041 * 181.74252 * 5 3 2 7 7 C 1.38235 * 119.99609 * 84.74749 * 6 5 3 8 8 C 1.38229 * 119.99760 * 179.97438 * 7 6 5 9 9 C 1.38234 * 120.00205 * 0.27694 * 8 7 6 10 10 C 1.50703 * 120.00447 * 179.72381 * 9 8 7 11 11 C 1.38240 * 119.99740 * 359.53303 * 9 8 7 12 12 C 1.38233 * 119.99929 * 264.72936 * 6 5 3 13 13 N 1.46904 * 109.47052 * 296.11475 * 3 2 1 14 14 C 1.46904 * 110.99774 * 84.30814 * 13 3 2 15 15 C 1.52997 * 109.46648 * 76.65822 * 14 13 3 16 16 C 1.46898 * 111.00195 * 320.35645 * 13 3 2 17 17 C 1.53002 * 109.47435 * 196.20880 * 16 13 3 18 18 C 1.50693 * 109.47188 * 179.97438 * 17 16 13 19 19 H 1.07997 * 120.00218 * 0.02562 * 18 17 16 20 20 C 1.37883 * 120.00089 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99627 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99965 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47484 * 60.00481 * 22 20 18 24 24 H 1.48504 * 109.47033 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47322 * 300.00177 * 22 20 18 26 26 H 1.09004 * 109.46632 * 190.39541 * 1 2 3 27 27 H 1.08994 * 109.46657 * 310.39246 * 1 2 3 28 28 H 1.09001 * 109.47079 * 70.39444 * 1 2 3 29 29 H 1.09007 * 109.46936 * 240.00167 * 2 1 3 30 30 H 1.09002 * 109.47273 * 120.00359 * 2 1 3 31 31 H 1.09001 * 109.47449 * 61.74684 * 5 3 2 32 32 H 1.08997 * 109.46910 * 301.73858 * 5 3 2 33 33 H 1.08000 * 120.00667 * 359.97438 * 7 6 5 34 34 H 1.08007 * 120.00408 * 180.02562 * 8 7 6 35 35 H 1.09006 * 109.46937 * 90.00280 * 10 9 8 36 36 H 1.08992 * 109.47466 * 210.00175 * 10 9 8 37 37 H 1.08996 * 109.47057 * 330.00810 * 10 9 8 38 38 H 1.07999 * 119.99623 * 180.22933 * 11 9 8 39 39 H 1.07995 * 120.00502 * 359.97438 * 12 6 5 40 40 H 1.09002 * 109.46716 * 196.65280 * 14 13 3 41 41 H 1.08994 * 109.47351 * 316.65353 * 14 13 3 42 42 H 1.08997 * 109.47854 * 64.75731 * 15 14 13 43 43 H 1.09007 * 109.46628 * 184.75420 * 15 14 13 44 44 H 1.08998 * 109.47292 * 304.75127 * 15 14 13 45 45 H 1.09007 * 109.47019 * 316.21074 * 16 13 3 46 46 H 1.09004 * 109.47320 * 76.20835 * 16 13 3 47 47 H 1.08994 * 109.46843 * 300.00074 * 17 16 13 48 48 H 1.08997 * 109.46573 * 59.99931 * 17 16 13 49 49 H 0.97006 * 119.99788 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6210 1.9760 0.8531 5 6 3.5669 1.4435 0.0977 6 6 4.0665 2.8647 0.1408 7 6 4.1164 3.5435 1.3439 8 6 4.5751 4.8469 1.3836 9 6 4.9786 5.4734 0.2193 10 6 5.4729 6.8964 0.2616 11 6 4.9324 4.7932 -0.9833 12 6 4.4752 3.4893 -1.0227 13 7 1.6285 2.1073 -1.2436 14 6 0.2641 2.6398 -1.1293 15 6 0.2861 3.9244 -0.2985 16 6 1.7437 1.1967 -2.3905 17 6 1.7051 2.0047 -3.6893 18 6 1.8240 1.0705 -4.8657 19 1 1.9173 0.0069 -4.7034 20 6 1.8126 1.5736 -6.1494 21 7 1.6984 2.8688 -6.3470 22 14 1.9592 0.4156 -7.6077 23 1 0.8295 -0.5482 -7.5902 24 1 1.9218 1.1998 -8.8683 25 1 3.2434 -0.3255 -7.5242 26 1 -0.3633 -1.0109 0.1854 27 1 -0.3632 0.6659 0.7827 28 1 -0.3633 0.3448 -0.9681 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8900 31 1 3.9870 0.9370 -0.7713 32 1 3.8733 0.9231 1.0050 33 1 3.7969 3.0557 2.2530 34 1 4.6145 5.3772 2.3237 35 1 6.5510 6.9019 0.4224 36 1 5.2441 7.3888 -0.6834 37 1 4.9813 7.4277 1.0765 38 1 5.2512 5.2815 -1.8923 39 1 4.4369 2.9587 -1.9626 40 1 -0.1257 2.8569 -2.1238 41 1 -0.3739 1.9027 -0.6419 42 1 0.8548 4.6894 -0.8271 43 1 -0.7347 4.2735 -0.1423 44 1 0.7536 3.7255 0.6658 45 1 2.6862 0.6525 -2.3291 46 1 0.9143 0.4895 -2.3778 47 1 0.7627 2.5488 -3.7507 48 1 2.5345 2.7118 -3.7019 49 1 1.6908 3.2228 -7.2502 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000483936556.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:37 Heat of formation + Delta-G solvation = 8.444984 kcal Electronic energy + Delta-G solvation = -24191.679592 eV Core-core repulsion = 21117.867501 eV Total energy + Delta-G solvation = -3073.812091 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.54219 -38.35540 -33.95447 -33.14327 -32.28293 -30.80517 -30.48969 -29.92182 -27.96925 -26.03041 -24.21477 -23.27946 -22.35453 -21.57931 -21.05884 -20.31325 -18.80031 -16.40523 -15.84596 -15.66255 -14.93154 -14.80035 -14.64472 -14.37807 -14.29635 -13.93829 -13.55919 -13.10258 -12.99743 -12.83225 -12.56146 -12.38762 -12.17181 -11.97963 -11.77600 -11.65354 -11.37410 -11.30911 -11.25317 -10.93935 -10.91755 -10.84169 -10.59946 -10.54818 -10.49060 -10.40583 -9.99950 -9.66860 -9.29678 -9.06246 -8.51650 -8.28877 -8.07221 -7.41244 -5.96071 -3.98198 1.71366 1.81821 3.34300 3.39105 3.41088 4.11707 4.41223 4.58103 4.95565 5.08375 5.13791 5.27159 5.30757 5.35208 5.39510 5.42370 5.45201 5.56985 5.67237 5.69043 5.77326 5.82437 5.86392 5.90722 5.92693 5.95390 6.00308 6.10612 6.13834 6.18014 6.22858 6.28064 6.41422 6.42434 6.48837 6.52237 6.57536 6.62401 6.74647 6.79405 6.96058 7.08538 7.12788 7.42249 7.63966 7.72643 7.88658 8.00678 8.17226 8.48835 9.09682 9.65193 11.14994 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.012636 B = 0.005144 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.307449 B = 5442.205678 C = 6696.940371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.156 4.156 3 C 0.089 3.911 4 H 0.072 0.928 5 C -0.072 4.072 6 C -0.059 4.059 7 C -0.123 4.123 8 C -0.128 4.128 9 C -0.100 4.100 10 C -0.110 4.110 11 C -0.119 4.119 12 C -0.079 4.079 13 N -0.521 5.521 14 C 0.030 3.970 15 C -0.139 4.139 16 C 0.061 3.939 17 C 0.032 3.968 18 C -0.521 4.521 19 H 0.051 0.949 20 C 0.060 3.940 21 N -0.892 5.892 22 Si 0.889 3.111 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.277 1.277 26 H 0.047 0.953 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.116 0.884 39 H 0.126 0.874 40 H 0.078 0.922 41 H 0.047 0.953 42 H 0.057 0.943 43 H 0.045 0.955 44 H 0.046 0.954 45 H 0.057 0.943 46 H 0.023 0.977 47 H 0.014 0.986 48 H 0.022 0.978 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.033 1.682 16.708 17.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.195 4.195 3 C -0.021 4.021 4 H 0.091 0.909 5 C -0.110 4.110 6 C -0.059 4.059 7 C -0.141 4.141 8 C -0.146 4.146 9 C -0.100 4.100 10 C -0.167 4.167 11 C -0.137 4.137 12 C -0.097 4.097 13 N -0.245 5.245 14 C -0.098 4.098 15 C -0.197 4.197 16 C -0.065 4.065 17 C -0.005 4.005 18 C -0.560 4.560 19 H 0.069 0.931 20 C -0.142 4.142 21 N -0.532 5.532 22 Si 0.717 3.283 23 H -0.204 1.204 24 H -0.213 1.213 25 H -0.203 1.203 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.134 0.866 39 H 0.144 0.856 40 H 0.096 0.904 41 H 0.064 0.936 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.075 0.925 46 H 0.042 0.958 47 H 0.032 0.968 48 H 0.041 0.959 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.337 2.226 16.481 16.962 hybrid contribution -0.550 -1.251 -0.808 1.587 sum 2.787 0.975 15.673 15.949 Atomic orbital electron populations 1.22066 0.96174 1.00881 1.02267 1.22265 0.96197 0.98656 1.02406 1.21717 0.94065 0.92202 0.94074 0.90947 1.20652 0.95252 0.93103 1.01946 1.19617 0.97456 0.95950 0.92857 1.20874 1.01161 0.94802 0.97253 1.20811 1.01424 0.95191 0.97207 1.19792 1.00609 0.96067 0.93570 1.20736 1.00644 0.92970 1.02369 1.21033 1.00608 0.95072 0.96995 1.21098 0.95900 0.94507 0.98153 1.62236 1.23537 1.36490 1.02213 1.22486 0.90150 0.96025 1.01144 1.21712 1.00069 0.98281 0.99605 1.22372 0.98873 0.94180 0.91093 1.19048 0.97518 0.95082 0.88888 1.21170 1.50251 0.93391 0.91176 0.93059 1.24968 0.95425 0.94909 0.98853 1.69967 1.50425 1.11445 1.21315 0.86722 0.78591 0.80928 0.82108 1.20374 1.21332 1.20297 0.93353 0.92957 0.91315 0.90798 0.92407 0.90785 0.91615 0.87095 0.87115 0.91809 0.91754 0.92117 0.86573 0.85592 0.90360 0.93560 0.92345 0.93576 0.93519 0.92465 0.95835 0.96763 0.95946 0.93042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 8.09 37.16 0.30 -1.72 16 2 C -0.16 -2.07 4.89 -26.73 -0.13 -2.20 16 3 C 0.09 1.26 1.81 -67.71 -0.12 1.13 16 4 H 0.07 1.01 6.48 -51.93 -0.34 0.67 16 5 C -0.07 -0.98 4.90 -27.88 -0.14 -1.12 16 6 C -0.06 -0.86 4.83 -104.62 -0.50 -1.37 16 7 C -0.12 -1.63 9.72 -39.59 -0.38 -2.01 16 8 C -0.13 -1.66 9.70 -39.59 -0.38 -2.04 16 9 C -0.10 -1.36 5.88 -104.62 -0.62 -1.97 16 10 C -0.11 -1.18 10.01 36.01 0.36 -0.82 16 11 C -0.12 -1.81 9.70 -39.58 -0.38 -2.19 16 12 C -0.08 -1.28 9.47 -39.58 -0.38 -1.65 16 13 N -0.52 -8.90 3.69 -226.65 -0.84 -9.73 16 14 C 0.03 0.49 4.96 -3.82 -0.02 0.47 16 15 C -0.14 -2.07 10.07 37.16 0.37 -1.70 16 16 C 0.06 1.24 3.32 -3.82 -0.01 1.22 16 17 C 0.03 0.82 5.04 -27.89 -0.14 0.68 16 18 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 19 H 0.05 1.39 7.74 -52.49 -0.41 0.99 16 20 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 21 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 22 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.63 7.56 -51.93 -0.39 0.23 16 28 H 0.07 1.02 4.75 -51.93 -0.25 0.77 16 29 H 0.07 1.09 6.13 -51.92 -0.32 0.77 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.07 1.10 6.91 -51.93 -0.36 0.74 16 32 H 0.07 0.77 8.12 -51.93 -0.42 0.34 16 33 H 0.11 1.26 8.06 -52.49 -0.42 0.83 16 34 H 0.11 1.19 8.06 -52.48 -0.42 0.76 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 37 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 38 H 0.12 1.68 8.06 -52.49 -0.42 1.25 16 39 H 0.13 2.27 8.06 -52.49 -0.42 1.85 16 40 H 0.08 1.50 6.25 -51.93 -0.32 1.18 16 41 H 0.05 0.70 3.87 -51.93 -0.20 0.50 16 42 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.05 0.66 6.76 -51.93 -0.35 0.31 16 45 H 0.06 1.15 6.28 -51.92 -0.33 0.82 16 46 H 0.02 0.48 5.75 -51.93 -0.30 0.18 16 47 H 0.01 0.39 6.55 -51.93 -0.34 0.05 16 48 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 373.52 15.07 5.63 5.63 Total: -1.00 -29.33 373.52 -10.60 -39.94 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -8.52 Total: 2.16 kcal Atomic # 6 Polarization: -25.98 SS G_CDS: -2.59 Total: -28.56 kcal Atomic # 7 Polarization: -35.69 SS G_CDS: -0.10 Total: -35.79 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.33 -10.60 -39.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000483936556.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.381 kcal (2) G-P(sol) polarization free energy of solvation -29.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds