Wall clock time and date at job start Tue Mar 31 2020 06:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47095 * 2 1 4 4 H 1.08997 * 109.47397 * 56.11345 * 3 2 1 5 5 C 1.52998 * 109.46947 * 176.11831 * 3 2 1 6 6 C 1.50708 * 109.47041 * 181.74252 * 5 3 2 7 7 C 1.38235 * 119.99609 * 84.74749 * 6 5 3 8 8 C 1.38229 * 119.99760 * 179.97438 * 7 6 5 9 9 C 1.38234 * 120.00205 * 0.27694 * 8 7 6 10 10 C 1.50703 * 120.00447 * 179.72381 * 9 8 7 11 11 C 1.38240 * 119.99740 * 359.53303 * 9 8 7 12 12 C 1.38233 * 119.99929 * 264.72936 * 6 5 3 13 13 N 1.46904 * 109.47052 * 296.11475 * 3 2 1 14 14 C 1.46904 * 110.99774 * 84.30814 * 13 3 2 15 15 C 1.52997 * 109.46648 * 76.65822 * 14 13 3 16 16 C 1.46898 * 111.00195 * 320.35645 * 13 3 2 17 17 C 1.53002 * 109.47435 * 196.20880 * 16 13 3 18 18 C 1.50693 * 109.47188 * 179.97438 * 17 16 13 19 19 H 1.07997 * 120.00218 * 0.02562 * 18 17 16 20 20 C 1.37883 * 120.00089 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99627 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99965 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47484 * 60.00481 * 22 20 18 24 24 H 1.48504 * 109.47033 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47322 * 300.00177 * 22 20 18 26 26 H 1.09004 * 109.46632 * 190.39541 * 1 2 3 27 27 H 1.08994 * 109.46657 * 310.39246 * 1 2 3 28 28 H 1.09001 * 109.47079 * 70.39444 * 1 2 3 29 29 H 1.09007 * 109.46936 * 240.00167 * 2 1 3 30 30 H 1.09002 * 109.47273 * 120.00359 * 2 1 3 31 31 H 1.09001 * 109.47449 * 61.74684 * 5 3 2 32 32 H 1.08997 * 109.46910 * 301.73858 * 5 3 2 33 33 H 1.08000 * 120.00667 * 359.97438 * 7 6 5 34 34 H 1.08007 * 120.00408 * 180.02562 * 8 7 6 35 35 H 1.09006 * 109.46937 * 90.00280 * 10 9 8 36 36 H 1.08992 * 109.47466 * 210.00175 * 10 9 8 37 37 H 1.08996 * 109.47057 * 330.00810 * 10 9 8 38 38 H 1.07999 * 119.99623 * 180.22933 * 11 9 8 39 39 H 1.07995 * 120.00502 * 359.97438 * 12 6 5 40 40 H 1.09002 * 109.46716 * 196.65280 * 14 13 3 41 41 H 1.08994 * 109.47351 * 316.65353 * 14 13 3 42 42 H 1.08997 * 109.47854 * 64.75731 * 15 14 13 43 43 H 1.09007 * 109.46628 * 184.75420 * 15 14 13 44 44 H 1.08998 * 109.47292 * 304.75127 * 15 14 13 45 45 H 1.09007 * 109.47019 * 316.21074 * 16 13 3 46 46 H 1.09004 * 109.47320 * 76.20835 * 16 13 3 47 47 H 1.08994 * 109.46843 * 300.00074 * 17 16 13 48 48 H 1.08997 * 109.46573 * 59.99931 * 17 16 13 49 49 H 0.97006 * 119.99788 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6210 1.9760 0.8531 5 6 3.5669 1.4435 0.0977 6 6 4.0665 2.8647 0.1408 7 6 4.1164 3.5435 1.3439 8 6 4.5751 4.8469 1.3836 9 6 4.9786 5.4734 0.2193 10 6 5.4729 6.8964 0.2616 11 6 4.9324 4.7932 -0.9833 12 6 4.4752 3.4893 -1.0227 13 7 1.6285 2.1073 -1.2436 14 6 0.2641 2.6398 -1.1293 15 6 0.2861 3.9244 -0.2985 16 6 1.7437 1.1967 -2.3905 17 6 1.7051 2.0047 -3.6893 18 6 1.8240 1.0705 -4.8657 19 1 1.9173 0.0069 -4.7034 20 6 1.8126 1.5736 -6.1494 21 7 1.6984 2.8688 -6.3470 22 14 1.9592 0.4156 -7.6077 23 1 0.8295 -0.5482 -7.5902 24 1 1.9218 1.1998 -8.8683 25 1 3.2434 -0.3255 -7.5242 26 1 -0.3633 -1.0109 0.1854 27 1 -0.3632 0.6659 0.7827 28 1 -0.3633 0.3448 -0.9681 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8900 31 1 3.9870 0.9370 -0.7713 32 1 3.8733 0.9231 1.0050 33 1 3.7969 3.0557 2.2530 34 1 4.6145 5.3772 2.3237 35 1 6.5510 6.9019 0.4224 36 1 5.2441 7.3888 -0.6834 37 1 4.9813 7.4277 1.0765 38 1 5.2512 5.2815 -1.8923 39 1 4.4369 2.9587 -1.9626 40 1 -0.1257 2.8569 -2.1238 41 1 -0.3739 1.9027 -0.6419 42 1 0.8548 4.6894 -0.8271 43 1 -0.7347 4.2735 -0.1423 44 1 0.7536 3.7255 0.6658 45 1 2.6862 0.6525 -2.3291 46 1 0.9143 0.4895 -2.3778 47 1 0.7627 2.5488 -3.7507 48 1 2.5345 2.7118 -3.7019 49 1 1.6908 3.2228 -7.2502 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000483936556.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:37 Heat of formation + Delta-G solvation = -5.442558 kcal Electronic energy + Delta-G solvation = -24192.281801 eV Core-core repulsion = 21117.867501 eV Total energy + Delta-G solvation = -3074.414300 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.74057 -39.56500 -35.57284 -34.73884 -33.50776 -32.49394 -31.61820 -31.06081 -29.51139 -27.22927 -26.04471 -24.36211 -23.49733 -23.12098 -22.50335 -21.43849 -20.17909 -18.50649 -17.13516 -16.87650 -16.46174 -16.06635 -15.94353 -15.80669 -15.71959 -15.31596 -14.52277 -14.31882 -14.27051 -14.10193 -14.01172 -13.81633 -13.38099 -13.36104 -13.04185 -12.94474 -12.79402 -12.67019 -12.56867 -12.49435 -12.39179 -12.18175 -12.01212 -11.95082 -11.66141 -11.56478 -11.45325 -11.37794 -11.16748 -11.06442 -10.50898 -9.64323 -9.16227 -8.77862 -8.18351 -6.29330 0.62103 0.69619 1.38057 1.41156 1.48898 2.39973 3.00775 3.14757 3.17796 3.85166 4.05974 4.12999 4.16175 4.20982 4.27880 4.30920 4.36214 4.43014 4.48885 4.51900 4.67303 4.69390 4.74316 4.77296 4.83351 4.86456 4.88780 4.94001 4.99362 5.03742 5.04206 5.11348 5.14855 5.17515 5.24408 5.31073 5.37376 5.40869 5.42389 5.47364 5.50593 5.69566 5.76275 5.84647 5.87248 5.98241 6.20268 6.32728 6.48454 6.56294 6.89221 7.39546 8.93380 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.012636 B = 0.005144 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.307449 B = 5442.205678 C = 6696.940371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.153 4.153 3 C 0.092 3.908 4 H 0.089 0.911 5 C -0.069 4.069 6 C -0.067 4.067 7 C -0.119 4.119 8 C -0.127 4.127 9 C -0.105 4.105 10 C -0.109 4.109 11 C -0.141 4.141 12 C -0.104 4.104 13 N -0.530 5.530 14 C 0.030 3.970 15 C -0.128 4.128 16 C 0.087 3.913 17 C 0.043 3.957 18 C -0.541 4.541 19 H 0.057 0.943 20 C 0.003 3.997 21 N -0.932 5.932 22 Si 0.961 3.039 23 H -0.267 1.267 24 H -0.284 1.284 25 H -0.267 1.267 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.043 0.957 29 H 0.053 0.947 30 H 0.086 0.914 31 H 0.052 0.948 32 H 0.097 0.903 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.079 0.921 38 H 0.108 0.892 39 H 0.090 0.910 40 H 0.040 0.960 41 H 0.068 0.932 42 H 0.032 0.968 43 H 0.066 0.934 44 H 0.062 0.938 45 H 0.055 0.945 46 H 0.024 0.976 47 H -0.015 1.015 48 H -0.014 1.014 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.911 0.761 19.606 19.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.192 4.192 3 C -0.017 4.017 4 H 0.107 0.893 5 C -0.107 4.107 6 C -0.067 4.067 7 C -0.137 4.137 8 C -0.145 4.145 9 C -0.105 4.105 10 C -0.165 4.165 11 C -0.159 4.159 12 C -0.123 4.123 13 N -0.254 5.254 14 C -0.098 4.098 15 C -0.186 4.186 16 C -0.041 4.041 17 C 0.006 3.994 18 C -0.580 4.580 19 H 0.076 0.924 20 C -0.195 4.195 21 N -0.572 5.572 22 Si 0.786 3.214 23 H -0.191 1.191 24 H -0.209 1.209 25 H -0.192 1.192 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.104 0.896 31 H 0.071 0.929 32 H 0.115 0.885 33 H 0.159 0.841 34 H 0.160 0.840 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.098 0.902 38 H 0.126 0.874 39 H 0.108 0.892 40 H 0.059 0.941 41 H 0.086 0.914 42 H 0.051 0.949 43 H 0.085 0.915 44 H 0.081 0.919 45 H 0.073 0.927 46 H 0.042 0.958 47 H 0.004 0.996 48 H 0.004 0.996 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.216 1.296 19.395 19.702 hybrid contribution -0.498 -0.903 -1.666 1.959 sum 2.719 0.393 17.729 17.941 Atomic orbital electron populations 1.22021 0.95796 1.02078 1.01278 1.22218 0.96462 0.97657 1.02814 1.21804 0.94427 0.92932 0.92518 0.89327 1.20671 0.94739 0.92754 1.02505 1.19721 0.97624 0.96500 0.92837 1.21193 1.00167 0.94950 0.97408 1.21214 1.00002 0.95234 0.98013 1.20122 0.99982 0.97349 0.93009 1.20778 1.01619 0.91201 1.02944 1.21117 1.01752 0.95075 0.97983 1.20954 0.98320 0.95267 0.97714 1.62123 1.24150 1.36346 1.02798 1.22492 0.90067 0.97557 0.99669 1.21621 1.01131 0.96415 0.99424 1.21892 0.98675 0.93447 0.90068 1.18849 0.94326 0.94480 0.91745 1.21606 1.50062 0.93993 0.92297 0.92437 1.25922 0.94820 0.96585 1.02161 1.70122 1.51386 1.13593 1.22081 0.85563 0.79168 0.78726 0.77965 1.19141 1.20904 1.19219 0.91913 0.91457 0.93860 0.92784 0.89567 0.92898 0.88466 0.84086 0.84009 0.90427 0.92189 0.90244 0.87400 0.89207 0.94148 0.91398 0.94859 0.91508 0.91881 0.92656 0.95786 0.99633 0.99607 0.92939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 8.09 71.98 0.58 -3.05 16 2 C -0.15 -3.70 4.89 30.59 0.15 -3.55 16 3 C 0.09 2.45 1.81 44.91 0.08 2.54 16 4 H 0.09 2.15 6.48 -2.39 -0.02 2.13 16 5 C -0.07 -1.81 4.90 29.85 0.15 -1.67 16 6 C -0.07 -1.93 4.83 -19.86 -0.10 -2.02 16 7 C -0.12 -2.83 9.72 22.27 0.22 -2.61 16 8 C -0.13 -2.92 9.70 22.27 0.22 -2.70 16 9 C -0.10 -2.74 5.88 -19.86 -0.12 -2.85 16 10 C -0.11 -2.15 10.01 71.24 0.71 -1.44 16 11 C -0.14 -4.53 9.70 22.27 0.22 -4.32 16 12 C -0.10 -3.63 9.47 22.27 0.21 -3.42 16 13 N -0.53 -18.60 3.69 -870.98 -3.21 -21.81 16 14 C 0.03 0.99 4.96 86.30 0.43 1.42 16 15 C -0.13 -3.73 10.07 71.98 0.72 -3.00 16 16 C 0.09 3.67 3.32 86.30 0.29 3.95 16 17 C 0.04 2.38 5.04 29.85 0.15 2.53 16 18 C -0.54 -31.52 9.11 25.60 0.23 -31.29 16 19 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 20 C 0.00 0.17 5.46 84.66 0.46 0.64 16 21 N -0.93 -58.38 13.29 21.45 0.28 -58.10 16 22 Si 0.96 45.21 29.54 68.60 2.03 47.24 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 24 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 25 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 26 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 27 H 0.07 1.38 7.56 -2.39 -0.02 1.36 16 28 H 0.04 1.24 4.75 -2.39 -0.01 1.23 16 29 H 0.05 1.54 6.13 -2.38 -0.01 1.52 16 30 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.05 1.61 6.91 -2.39 -0.02 1.59 16 32 H 0.10 1.94 8.12 -2.39 -0.02 1.93 16 33 H 0.14 2.50 8.06 -2.91 -0.02 2.47 16 34 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 35 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 36 H 0.06 1.23 8.09 -2.39 -0.02 1.21 16 37 H 0.08 1.27 8.09 -2.39 -0.02 1.26 16 38 H 0.11 3.46 8.06 -2.91 -0.02 3.43 16 39 H 0.09 3.67 8.06 -2.91 -0.02 3.65 16 40 H 0.04 1.65 6.25 -2.39 -0.01 1.64 16 41 H 0.07 1.99 3.87 -2.39 -0.01 1.98 16 42 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 44 H 0.06 1.62 6.76 -2.39 -0.02 1.60 16 45 H 0.06 2.34 6.28 -2.38 -0.01 2.33 16 46 H 0.02 1.01 5.75 -2.38 -0.01 1.00 16 47 H -0.01 -0.88 6.55 -2.39 -0.02 -0.89 16 48 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 49 H 0.26 15.47 8.31 -92.70 -0.77 14.69 16 Total: -1.00 -67.44 373.52 4.61 -62.83 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 0.90 Total: 20.68 kcal Atomic # 6 Polarization: -55.45 SS G_CDS: 4.60 Total: -50.84 kcal Atomic # 7 Polarization: -76.99 SS G_CDS: -2.92 Total: -79.91 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -67.44 4.61 -62.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000483936556.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.390 kcal (2) G-P(sol) polarization free energy of solvation -67.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds