Wall clock time and date at job start Tue Mar 31 2020 06:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46910 * 2 1 4 4 C 1.52998 * 109.47060 * 120.00334 * 2 1 3 5 5 C 1.53000 * 109.47347 * 65.00487 * 4 2 1 6 6 N 1.46898 * 109.46984 * 181.04750 * 5 4 2 7 7 C 1.46902 * 110.99762 * 199.94963 * 6 5 4 8 8 C 1.50699 * 109.46790 * 72.01206 * 7 6 5 9 9 H 1.08001 * 120.00371 * 4.49663 * 8 7 6 10 10 C 1.37881 * 119.99707 * 184.50068 * 8 7 6 11 11 N 1.31515 * 119.99852 * 179.97438 * 10 8 7 12 12 Si 1.86796 * 120.00105 * 359.97438 * 10 8 7 13 13 H 1.48497 * 109.47319 * 90.00011 * 12 10 8 14 14 H 1.48503 * 109.47096 * 210.00201 * 12 10 8 15 15 H 1.48504 * 109.47303 * 330.00119 * 12 10 8 16 16 C 1.46900 * 111.00081 * 75.99725 * 6 5 4 17 17 C 1.53000 * 109.47598 * 199.68368 * 16 6 5 18 18 H 1.09007 * 109.47026 * 304.45736 * 17 16 6 19 19 C 1.53003 * 109.46685 * 64.45228 * 17 16 6 20 20 C 1.50696 * 109.47620 * 184.45127 * 17 16 6 21 21 C 1.38233 * 119.99650 * 299.73207 * 20 17 16 22 22 C 1.38239 * 119.99558 * 179.78875 * 21 20 17 23 23 C 1.38238 * 120.00167 * 0.43326 * 22 21 20 24 24 C 1.38233 * 119.99733 * 359.82267 * 23 22 21 25 25 C 1.38233 * 119.99893 * 120.00153 * 20 17 16 26 26 H 1.08995 * 109.47618 * 60.00178 * 1 2 3 27 27 H 1.09005 * 109.46706 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47203 * 299.99061 * 1 2 3 29 29 H 1.09001 * 109.47059 * 240.00166 * 2 1 3 30 30 H 1.08998 * 109.47109 * 180.02562 * 3 2 1 31 31 H 1.08995 * 109.47360 * 300.00311 * 3 2 1 32 32 H 1.09001 * 109.47124 * 60.00206 * 3 2 1 33 33 H 1.08999 * 109.46903 * 304.99714 * 4 2 1 34 34 H 1.09004 * 109.46862 * 185.00127 * 4 2 1 35 35 H 1.08996 * 109.47318 * 61.04622 * 5 4 2 36 36 H 1.08997 * 109.46756 * 301.04370 * 5 4 2 37 37 H 1.09007 * 109.46954 * 192.00469 * 7 6 5 38 38 H 1.08997 * 109.47432 * 312.00902 * 7 6 5 39 39 H 0.97004 * 120.00150 * 179.97438 * 11 10 8 40 40 H 1.09004 * 109.47413 * 79.68544 * 16 6 5 41 41 H 1.08998 * 109.47333 * 319.68823 * 16 6 5 42 42 H 1.09004 * 109.47162 * 294.56031 * 19 17 16 43 43 H 1.09002 * 109.47316 * 54.56054 * 19 17 16 44 44 H 1.09001 * 109.47079 * 174.56618 * 19 17 16 45 45 H 1.07999 * 120.00812 * 359.97438 * 21 20 17 46 46 H 1.07997 * 120.00335 * 180.27262 * 22 21 20 47 47 H 1.08001 * 120.00054 * 179.83450 * 23 22 21 48 48 H 1.07997 * 120.00053 * 179.97438 * 24 23 22 49 49 H 1.07997 * 119.99960 * 359.97438 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6354 -2.1956 1.1878 6 7 2.1033 -2.8826 2.3990 7 6 2.1678 -4.3350 2.1887 8 6 3.3245 -4.6599 1.2789 9 1 3.9926 -3.8761 0.9538 10 6 3.5298 -5.9579 0.8616 11 7 4.5389 -6.2413 0.0673 12 14 2.3746 -7.3137 1.4243 13 1 1.2548 -7.4429 0.4576 14 1 3.1168 -8.5979 1.4967 15 1 1.8339 -6.9782 2.7661 16 6 1.2537 -2.5548 3.5517 17 6 2.0104 -2.8594 4.8461 18 1 2.3384 -3.8989 4.8392 19 6 3.2293 -1.9407 4.9525 20 6 1.1018 -2.6271 6.0258 21 6 0.5628 -1.3735 6.2466 22 6 -0.2741 -1.1614 7.3262 23 6 -0.5648 -2.2008 8.1901 24 6 -0.0215 -3.4530 7.9721 25 6 0.8120 -3.6662 6.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5137 0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6054 -0.2618 2.1369 34 1 3.1264 -0.6444 1.2951 35 1 2.0852 -2.6596 0.3101 36 1 0.5500 -2.2720 1.1232 37 1 2.3078 -4.8351 3.1471 38 1 1.2392 -4.6777 1.7323 39 1 4.6836 -7.1546 -0.2261 40 1 0.3432 -3.1529 3.5138 41 1 0.9945 -1.4964 3.5228 42 1 3.9323 -2.1758 4.1533 43 1 2.9106 -0.9023 4.8622 44 1 3.7134 -2.0897 5.9176 45 1 0.7931 -0.5604 5.5740 46 1 -0.6988 -0.1831 7.4964 47 1 -1.2165 -2.0344 9.0351 48 1 -0.2482 -4.2650 8.6472 49 1 1.2363 -4.6446 6.7197 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000484898753.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:11 Heat of formation + Delta-G solvation = -0.682658 kcal Electronic energy + Delta-G solvation = -23597.361867 eV Core-core repulsion = 20523.153971 eV Total energy + Delta-G solvation = -3074.207895 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.46903 -37.72213 -35.81593 -33.83975 -32.31851 -30.84493 -29.38514 -29.01858 -27.35117 -27.01178 -24.94976 -23.06520 -22.55992 -22.18889 -20.43314 -19.65025 -19.08655 -16.89345 -16.75151 -15.40836 -15.17821 -14.86988 -14.81124 -14.45560 -14.02736 -13.79037 -13.62584 -13.26139 -13.19312 -12.90688 -12.67922 -12.51825 -12.29456 -12.17082 -12.01470 -11.89204 -11.65458 -11.36505 -11.14932 -11.02826 -10.84706 -10.71519 -10.61348 -10.44267 -10.35955 -10.30433 -10.03759 -9.80753 -9.68621 -9.25416 -8.85803 -8.57482 -8.55020 -7.31024 -6.03477 -3.99659 1.44841 1.46317 3.27970 3.36174 3.38227 3.86381 4.43073 4.60961 4.91212 4.97660 5.04729 5.12948 5.18078 5.19945 5.28094 5.34371 5.36319 5.58077 5.62347 5.63905 5.69405 5.72911 5.81436 5.91247 5.93115 6.03075 6.05436 6.07971 6.10047 6.15612 6.16747 6.25608 6.28631 6.37052 6.44734 6.48783 6.53832 6.54027 6.56793 6.74535 6.77957 6.81942 6.89056 6.95891 7.00576 7.09495 7.67046 7.96207 8.11136 8.69591 9.07873 9.59448 11.09813 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.008880 B = 0.006019 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3152.323324 B = 4650.681269 C = 7100.941302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.099 4.099 3 C -0.144 4.144 4 C -0.105 4.105 5 C 0.061 3.939 6 N -0.523 5.523 7 C 0.162 3.838 8 C -0.503 4.503 9 H 0.081 0.919 10 C 0.068 3.932 11 N -0.901 5.901 12 Si 0.871 3.129 13 H -0.279 1.279 14 H -0.286 1.286 15 H -0.268 1.268 16 C 0.065 3.935 17 C -0.051 4.051 18 H 0.082 0.918 19 C -0.127 4.127 20 C -0.063 4.063 21 C -0.115 4.115 22 C -0.122 4.122 23 C -0.134 4.134 24 C -0.120 4.120 25 C -0.119 4.119 26 H 0.047 0.953 27 H 0.057 0.943 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.020 0.980 37 H 0.027 0.973 38 H -0.018 1.018 39 H 0.263 0.737 40 H 0.022 0.978 41 H 0.064 0.936 42 H 0.078 0.922 43 H 0.046 0.954 44 H 0.041 0.959 45 H 0.120 0.880 46 H 0.117 0.883 47 H 0.116 0.884 48 H 0.118 0.882 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.505 11.907 10.230 18.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 C -0.201 4.201 4 C -0.143 4.143 5 C -0.067 4.067 6 N -0.247 5.247 7 C 0.036 3.964 8 C -0.542 4.542 9 H 0.099 0.901 10 C -0.133 4.133 11 N -0.540 5.540 12 Si 0.699 3.301 13 H -0.204 1.204 14 H -0.212 1.212 15 H -0.193 1.193 16 C -0.064 4.064 17 C -0.070 4.070 18 H 0.100 0.900 19 C -0.184 4.184 20 C -0.064 4.064 21 C -0.133 4.133 22 C -0.140 4.140 23 C -0.152 4.152 24 C -0.138 4.138 25 C -0.137 4.137 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.038 0.962 37 H 0.045 0.955 38 H 0.000 1.000 39 H 0.072 0.928 40 H 0.040 0.960 41 H 0.082 0.918 42 H 0.097 0.903 43 H 0.065 0.935 44 H 0.060 0.940 45 H 0.138 0.862 46 H 0.135 0.865 47 H 0.134 0.866 48 H 0.136 0.864 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.934 11.909 10.229 18.063 hybrid contribution -1.487 -1.236 0.120 1.937 sum -10.421 10.673 10.348 18.155 Atomic orbital electron populations 1.21882 0.95885 1.01779 1.00866 1.21113 0.95397 0.95858 0.99402 1.21812 1.01022 0.96268 1.00989 1.21605 1.01470 0.95095 0.96092 1.22073 0.96461 0.93554 0.94596 1.61865 1.49358 1.10839 1.02606 1.20211 0.95918 0.83480 0.96840 1.21038 1.10964 0.94728 1.27455 0.90057 1.24890 0.95210 0.98349 0.94841 1.69894 1.29629 1.19739 1.34739 0.86925 0.81336 0.82138 0.79710 1.20450 1.21219 1.19303 1.22094 0.93616 0.99647 0.91038 1.20204 0.94320 1.01646 0.90845 0.89989 1.21650 0.97353 0.97978 1.01432 1.20100 0.96799 0.93278 0.96204 1.21027 0.97594 0.96915 0.97741 1.21105 0.98696 0.98808 0.95379 1.21063 1.00889 0.93455 0.99760 1.21108 0.97833 0.97070 0.97832 1.21166 0.98598 0.98979 0.94942 0.93356 0.92417 0.93203 0.91071 0.92693 0.93268 0.93127 0.92968 0.91308 0.89556 0.96194 0.95545 1.00002 0.92757 0.95972 0.91760 0.90349 0.93538 0.93969 0.86177 0.86487 0.86613 0.86444 0.86124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.95 37.16 0.33 -1.44 16 2 C -0.10 -1.30 2.92 -90.62 -0.26 -1.56 16 3 C -0.14 -1.62 9.19 37.16 0.34 -1.28 16 4 C -0.10 -1.59 4.81 -26.73 -0.13 -1.71 16 5 C 0.06 1.12 4.58 -3.83 -0.02 1.10 16 6 N -0.52 -10.42 3.84 -236.07 -0.91 -11.32 16 7 C 0.16 3.84 3.61 -4.98 -0.02 3.82 16 8 C -0.50 -14.01 8.85 -34.44 -0.30 -14.32 16 9 H 0.08 2.47 8.05 -52.49 -0.42 2.05 16 10 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 11 N -0.90 -27.40 13.96 55.43 0.77 -26.62 16 12 Si 0.87 21.52 27.38 -169.99 -4.65 16.86 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 15 H -0.27 -6.39 6.67 56.52 0.38 -6.01 16 16 C 0.06 1.09 3.94 -3.82 -0.02 1.08 16 17 C -0.05 -0.81 2.61 -91.77 -0.24 -1.05 16 18 H 0.08 1.46 6.39 -51.93 -0.33 1.13 16 19 C -0.13 -1.92 8.74 37.16 0.32 -1.59 16 20 C -0.06 -0.90 4.78 -104.63 -0.50 -1.40 16 21 C -0.11 -1.46 8.81 -39.58 -0.35 -1.81 16 22 C -0.12 -1.38 10.05 -39.58 -0.40 -1.77 16 23 C -0.13 -1.47 10.05 -39.58 -0.40 -1.87 16 24 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 25 C -0.12 -1.61 9.67 -39.58 -0.38 -1.99 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.75 6.54 -51.93 -0.34 0.41 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.05 0.74 6.75 -51.93 -0.35 0.39 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.09 1.83 7.11 -51.93 -0.37 1.46 16 36 H 0.02 0.35 6.37 -51.93 -0.33 0.02 16 37 H 0.03 0.64 5.85 -51.93 -0.30 0.34 16 38 H -0.02 -0.43 7.23 -51.93 -0.38 -0.81 16 39 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.02 0.39 8.00 -51.93 -0.42 -0.02 16 41 H 0.06 0.98 5.92 -51.93 -0.31 0.68 16 42 H 0.08 1.36 7.89 -51.93 -0.41 0.95 16 43 H 0.05 0.63 7.57 -51.93 -0.39 0.24 16 44 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.12 1.41 7.22 -52.49 -0.38 1.03 16 46 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 47 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 48 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 49 H 0.12 1.58 7.95 -52.49 -0.42 1.16 16 LS Contribution 379.60 15.07 5.72 5.72 Total: -1.00 -29.43 379.60 -10.53 -39.96 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -8.96 Total: 1.15 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: -2.51 Total: -25.75 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: -0.13 Total: -37.95 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.65 Total: 16.86 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.43 -10.53 -39.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000484898753.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.278 kcal (2) G-P(sol) polarization free energy of solvation -29.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds