Wall clock time and date at job start Tue Mar 31 2020 06:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46910 * 2 1 4 4 C 1.52998 * 109.47060 * 120.00334 * 2 1 3 5 5 C 1.53000 * 109.47347 * 65.00487 * 4 2 1 6 6 N 1.46898 * 109.46984 * 181.04750 * 5 4 2 7 7 C 1.46902 * 110.99762 * 199.94963 * 6 5 4 8 8 C 1.50699 * 109.46790 * 72.01206 * 7 6 5 9 9 H 1.08001 * 120.00371 * 4.49663 * 8 7 6 10 10 C 1.37881 * 119.99707 * 184.50068 * 8 7 6 11 11 N 1.31515 * 119.99852 * 179.97438 * 10 8 7 12 12 Si 1.86796 * 120.00105 * 359.97438 * 10 8 7 13 13 H 1.48497 * 109.47319 * 90.00011 * 12 10 8 14 14 H 1.48503 * 109.47096 * 210.00201 * 12 10 8 15 15 H 1.48504 * 109.47303 * 330.00119 * 12 10 8 16 16 C 1.46900 * 111.00081 * 75.99725 * 6 5 4 17 17 C 1.53000 * 109.47598 * 199.68368 * 16 6 5 18 18 H 1.09007 * 109.47026 * 304.45736 * 17 16 6 19 19 C 1.53003 * 109.46685 * 64.45228 * 17 16 6 20 20 C 1.50696 * 109.47620 * 184.45127 * 17 16 6 21 21 C 1.38233 * 119.99650 * 299.73207 * 20 17 16 22 22 C 1.38239 * 119.99558 * 179.78875 * 21 20 17 23 23 C 1.38238 * 120.00167 * 0.43326 * 22 21 20 24 24 C 1.38233 * 119.99733 * 359.82267 * 23 22 21 25 25 C 1.38233 * 119.99893 * 120.00153 * 20 17 16 26 26 H 1.08995 * 109.47618 * 60.00178 * 1 2 3 27 27 H 1.09005 * 109.46706 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47203 * 299.99061 * 1 2 3 29 29 H 1.09001 * 109.47059 * 240.00166 * 2 1 3 30 30 H 1.08998 * 109.47109 * 180.02562 * 3 2 1 31 31 H 1.08995 * 109.47360 * 300.00311 * 3 2 1 32 32 H 1.09001 * 109.47124 * 60.00206 * 3 2 1 33 33 H 1.08999 * 109.46903 * 304.99714 * 4 2 1 34 34 H 1.09004 * 109.46862 * 185.00127 * 4 2 1 35 35 H 1.08996 * 109.47318 * 61.04622 * 5 4 2 36 36 H 1.08997 * 109.46756 * 301.04370 * 5 4 2 37 37 H 1.09007 * 109.46954 * 192.00469 * 7 6 5 38 38 H 1.08997 * 109.47432 * 312.00902 * 7 6 5 39 39 H 0.97004 * 120.00150 * 179.97438 * 11 10 8 40 40 H 1.09004 * 109.47413 * 79.68544 * 16 6 5 41 41 H 1.08998 * 109.47333 * 319.68823 * 16 6 5 42 42 H 1.09004 * 109.47162 * 294.56031 * 19 17 16 43 43 H 1.09002 * 109.47316 * 54.56054 * 19 17 16 44 44 H 1.09001 * 109.47079 * 174.56618 * 19 17 16 45 45 H 1.07999 * 120.00812 * 359.97438 * 21 20 17 46 46 H 1.07997 * 120.00335 * 180.27262 * 22 21 20 47 47 H 1.08001 * 120.00054 * 179.83450 * 23 22 21 48 48 H 1.07997 * 120.00053 * 179.97438 * 24 23 22 49 49 H 1.07997 * 119.99960 * 359.97438 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6354 -2.1956 1.1878 6 7 2.1033 -2.8826 2.3990 7 6 2.1678 -4.3350 2.1887 8 6 3.3245 -4.6599 1.2789 9 1 3.9926 -3.8761 0.9538 10 6 3.5298 -5.9579 0.8616 11 7 4.5389 -6.2413 0.0673 12 14 2.3746 -7.3137 1.4243 13 1 1.2548 -7.4429 0.4576 14 1 3.1168 -8.5979 1.4967 15 1 1.8339 -6.9782 2.7661 16 6 1.2537 -2.5548 3.5517 17 6 2.0104 -2.8594 4.8461 18 1 2.3384 -3.8989 4.8392 19 6 3.2293 -1.9407 4.9525 20 6 1.1018 -2.6271 6.0258 21 6 0.5628 -1.3735 6.2466 22 6 -0.2741 -1.1614 7.3262 23 6 -0.5648 -2.2008 8.1901 24 6 -0.0215 -3.4530 7.9721 25 6 0.8120 -3.6662 6.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5137 0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6054 -0.2618 2.1369 34 1 3.1264 -0.6444 1.2951 35 1 2.0852 -2.6596 0.3101 36 1 0.5500 -2.2720 1.1232 37 1 2.3078 -4.8351 3.1471 38 1 1.2392 -4.6777 1.7323 39 1 4.6836 -7.1546 -0.2261 40 1 0.3432 -3.1529 3.5138 41 1 0.9945 -1.4964 3.5228 42 1 3.9323 -2.1758 4.1533 43 1 2.9106 -0.9023 4.8622 44 1 3.7134 -2.0897 5.9176 45 1 0.7931 -0.5604 5.5740 46 1 -0.6988 -0.1831 7.4964 47 1 -1.2165 -2.0344 9.0351 48 1 -0.2482 -4.2650 8.6472 49 1 1.2363 -4.6446 6.7197 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000484898753.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:10 Heat of formation + Delta-G solvation = -14.928150 kcal Electronic energy + Delta-G solvation = -23597.979597 eV Core-core repulsion = 20523.153971 eV Total energy + Delta-G solvation = -3074.825626 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.52098 -39.09004 -36.99222 -35.31617 -34.29363 -31.74967 -30.75194 -30.39016 -28.91572 -27.96621 -26.39968 -24.27584 -24.05092 -23.30433 -21.82685 -20.81738 -20.43464 -18.99979 -17.76345 -16.75111 -16.46035 -16.38519 -15.94849 -15.77246 -15.60244 -15.00565 -14.74857 -14.64073 -14.34426 -14.15593 -14.05105 -13.84868 -13.79132 -13.64248 -13.10333 -13.02036 -12.85547 -12.68948 -12.58295 -12.39311 -12.21517 -12.11609 -11.95111 -11.84456 -11.57854 -11.55285 -11.47192 -11.43368 -11.22979 -11.11614 -10.76874 -9.76783 -9.55122 -8.94375 -8.28073 -6.29337 0.51245 0.55249 1.30267 1.31986 1.42613 2.32315 2.92179 3.05346 3.17765 3.82611 3.91638 4.04312 4.11987 4.17267 4.20450 4.24597 4.30319 4.35451 4.39121 4.51885 4.62826 4.67926 4.70424 4.75166 4.79565 4.85311 4.86688 4.90375 4.96023 4.98721 5.05843 5.08100 5.11977 5.18120 5.22370 5.24391 5.28031 5.32010 5.41562 5.48952 5.55866 5.57557 5.59416 5.65926 5.67073 5.84083 6.04766 6.18613 6.45465 6.68925 6.77503 7.33886 8.88766 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.008880 B = 0.006019 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3152.323324 B = 4650.681269 C = 7100.941302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.099 4.099 3 C -0.139 4.139 4 C -0.093 4.093 5 C 0.064 3.936 6 N -0.533 5.533 7 C 0.174 3.826 8 C -0.505 4.505 9 H 0.039 0.961 10 C 0.011 3.989 11 N -0.947 5.947 12 Si 0.938 3.062 13 H -0.270 1.270 14 H -0.280 1.280 15 H -0.254 1.254 16 C 0.071 3.929 17 C -0.046 4.046 18 H 0.054 0.946 19 C -0.119 4.119 20 C -0.080 4.080 21 C -0.122 4.122 22 C -0.121 4.121 23 C -0.132 4.132 24 C -0.125 4.125 25 C -0.139 4.139 26 H 0.062 0.938 27 H 0.043 0.957 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.050 0.950 35 H 0.047 0.953 36 H 0.031 0.969 37 H 0.025 0.975 38 H -0.021 1.021 39 H 0.266 0.734 40 H 0.016 0.984 41 H 0.087 0.913 42 H 0.047 0.953 43 H 0.064 0.936 44 H 0.049 0.951 45 H 0.130 0.870 46 H 0.145 0.855 47 H 0.145 0.855 48 H 0.137 0.863 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.243 13.504 12.409 22.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.118 4.118 3 C -0.196 4.196 4 C -0.131 4.131 5 C -0.063 4.063 6 N -0.256 5.256 7 C 0.047 3.953 8 C -0.544 4.544 9 H 0.057 0.943 10 C -0.186 4.186 11 N -0.588 5.588 12 Si 0.763 3.237 13 H -0.195 1.195 14 H -0.205 1.205 15 H -0.178 1.178 16 C -0.057 4.057 17 C -0.065 4.065 18 H 0.072 0.928 19 C -0.176 4.176 20 C -0.081 4.081 21 C -0.140 4.140 22 C -0.139 4.139 23 C -0.150 4.150 24 C -0.142 4.142 25 C -0.157 4.157 26 H 0.082 0.918 27 H 0.062 0.938 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.049 0.951 37 H 0.043 0.957 38 H -0.004 1.004 39 H 0.075 0.925 40 H 0.034 0.966 41 H 0.105 0.895 42 H 0.067 0.933 43 H 0.083 0.917 44 H 0.068 0.932 45 H 0.148 0.852 46 H 0.163 0.837 47 H 0.163 0.837 48 H 0.155 0.845 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.681 13.528 12.417 21.763 hybrid contribution -0.605 -1.654 -0.542 1.843 sum -12.286 11.874 11.874 20.807 Atomic orbital electron populations 1.21844 0.94563 1.01312 1.02299 1.21101 0.96498 0.96784 0.97388 1.21765 1.00711 0.94793 1.02337 1.21499 1.00459 0.93004 0.98095 1.22045 0.96652 0.95151 0.92499 1.61807 1.51071 1.08522 1.04245 1.19923 0.93776 0.86210 0.95409 1.21217 1.11440 0.93868 1.27836 0.94296 1.25750 0.96903 1.01051 0.94920 1.70042 1.31776 1.20543 1.36425 0.85845 0.79207 0.78742 0.79953 1.19502 1.20544 1.17777 1.22138 0.92798 1.00749 0.90040 1.20065 0.94949 1.00058 0.91427 0.92802 1.21552 0.96537 0.98852 1.00664 1.19938 0.97703 0.94509 0.95942 1.21175 0.97839 0.96326 0.98619 1.21457 0.97777 1.00193 0.94481 1.21462 1.00395 0.92820 1.00274 1.21378 0.97133 0.98349 0.97379 1.21267 0.99725 0.98738 0.96019 0.91849 0.93797 0.91864 0.92825 0.93236 0.91834 0.91844 0.91178 0.93111 0.93476 0.95095 0.95685 1.00360 0.92540 0.96613 0.89466 0.93342 0.91706 0.93166 0.85230 0.83734 0.83749 0.84497 0.86877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 8.95 71.98 0.64 -2.53 16 2 C -0.10 -2.51 2.92 -10.79 -0.03 -2.55 16 3 C -0.14 -2.87 9.19 71.98 0.66 -2.21 16 4 C -0.09 -2.79 4.81 30.59 0.15 -2.65 16 5 C 0.06 2.43 4.58 86.30 0.40 2.82 16 6 N -0.53 -21.78 3.84 -900.80 -3.46 -25.24 16 7 C 0.17 8.51 3.61 85.56 0.31 8.82 16 8 C -0.51 -29.55 8.85 25.60 0.23 -29.32 16 9 H 0.04 2.54 8.05 -2.91 -0.02 2.52 16 10 C 0.01 0.65 5.47 84.66 0.46 1.11 16 11 N -0.95 -59.85 13.96 21.45 0.30 -59.55 16 12 Si 0.94 45.11 27.38 68.60 1.88 46.99 16 13 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 14 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 15 H -0.25 -11.52 6.67 99.48 0.66 -10.86 16 16 C 0.07 2.35 3.94 86.30 0.34 2.69 16 17 C -0.05 -1.46 2.61 -11.54 -0.03 -1.49 16 18 H 0.05 1.99 6.39 -2.38 -0.02 1.97 16 19 C -0.12 -3.57 8.74 71.98 0.63 -2.94 16 20 C -0.08 -2.18 4.78 -19.87 -0.09 -2.28 16 21 C -0.12 -2.76 8.81 22.27 0.20 -2.56 16 22 C -0.12 -2.28 10.05 22.27 0.22 -2.06 16 23 C -0.13 -2.41 10.05 22.27 0.22 -2.19 16 24 C -0.12 -2.63 10.05 22.27 0.22 -2.40 16 25 C -0.14 -3.64 9.67 22.27 0.22 -3.43 16 26 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.04 1.08 6.54 -2.38 -0.02 1.07 16 28 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.07 1.86 6.75 -2.39 -0.02 1.84 16 34 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 35 H 0.05 2.13 7.11 -2.39 -0.02 2.11 16 36 H 0.03 1.09 6.37 -2.39 -0.02 1.08 16 37 H 0.03 1.24 5.85 -2.38 -0.01 1.22 16 38 H -0.02 -1.05 7.23 -2.39 -0.02 -1.07 16 39 H 0.27 15.68 8.31 -92.70 -0.77 14.91 16 40 H 0.02 0.55 8.00 -2.39 -0.02 0.53 16 41 H 0.09 2.49 5.92 -2.39 -0.01 2.48 16 42 H 0.05 1.73 7.89 -2.39 -0.02 1.71 16 43 H 0.06 1.68 7.57 -2.39 -0.02 1.66 16 44 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.13 2.61 7.22 -2.91 -0.02 2.59 16 46 H 0.14 1.90 8.06 -2.91 -0.02 1.87 16 47 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 48 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 49 H 0.11 3.00 7.95 -2.91 -0.02 2.97 16 Total: -1.00 -66.54 379.60 4.29 -62.25 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: 0.83 Total: 18.72 kcal Atomic # 6 Polarization: -47.91 SS G_CDS: 4.74 Total: -43.17 kcal Atomic # 7 Polarization: -81.63 SS G_CDS: -3.16 Total: -84.79 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.88 Total: 46.99 kcal Total: -66.54 4.29 -62.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000484898753.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.321 kcal (2) G-P(sol) polarization free energy of solvation -66.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds