Wall clock time and date at job start Tue Mar 31 2020 05:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47085 * 2 1 4 4 C 1.52999 * 109.46652 * 180.02562 * 3 2 1 5 5 C 1.50706 * 109.46826 * 180.02562 * 4 3 2 6 6 C 1.38229 * 120.00239 * 90.00302 * 5 4 3 7 7 C 1.38235 * 119.99903 * 180.02562 * 6 5 4 8 8 C 1.38228 * 120.00148 * 359.95011 * 7 6 5 9 9 C 1.50703 * 119.99735 * 180.02562 * 8 7 6 10 10 H 1.08992 * 109.47476 * 19.99734 * 9 8 7 11 11 N 1.46902 * 109.47047 * 139.99824 * 9 8 7 12 12 C 1.46899 * 111.00090 * 205.35201 * 11 9 8 13 13 C 1.50700 * 109.47137 * 175.56622 * 12 11 9 14 14 H 1.08007 * 119.99736 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00069 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99874 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00071 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47217 * 60.00215 * 17 15 13 19 19 H 1.48500 * 109.47353 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47204 * 300.00081 * 17 15 13 21 21 C 1.52997 * 109.46749 * 259.99543 * 9 8 7 22 22 C 1.52997 * 109.47753 * 299.41502 * 21 9 8 23 23 C 1.52998 * 109.47377 * 59.41831 * 21 9 8 24 24 C 1.38232 * 120.00068 * 0.27847 * 8 7 6 25 25 C 1.38237 * 119.99503 * 269.97607 * 5 4 3 26 26 H 1.08995 * 109.47138 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46777 * 300.00011 * 1 2 3 28 28 H 1.08998 * 109.47107 * 59.99436 * 1 2 3 29 29 H 1.08998 * 109.47044 * 240.00030 * 2 1 3 30 30 H 1.09003 * 109.47128 * 120.00071 * 2 1 3 31 31 H 1.08998 * 109.47155 * 60.00098 * 3 2 1 32 32 H 1.09003 * 109.47195 * 300.00030 * 3 2 1 33 33 H 1.08998 * 109.47345 * 60.00111 * 4 3 2 34 34 H 1.09003 * 109.47260 * 299.99887 * 4 3 2 35 35 H 1.08000 * 119.99893 * 359.97176 * 6 5 4 36 36 H 1.08003 * 119.99509 * 179.97438 * 7 6 5 37 37 H 1.00900 * 111.00000 * 329.30996 * 11 9 8 38 38 H 1.09001 * 109.46982 * 295.56401 * 12 11 9 39 39 H 1.08993 * 109.46876 * 55.56105 * 12 11 9 40 40 H 0.97003 * 120.00061 * 180.02562 * 16 15 13 41 41 H 1.09001 * 109.47003 * 179.41589 * 21 9 8 42 42 H 1.09001 * 109.47456 * 179.97438 * 22 21 9 43 43 H 1.09001 * 109.46795 * 59.99959 * 22 21 9 44 44 H 1.09002 * 109.47240 * 300.00259 * 22 21 9 45 45 H 1.08993 * 109.47159 * 294.21057 * 23 21 9 46 46 H 1.09004 * 109.47025 * 54.20521 * 23 21 9 47 47 H 1.08992 * 109.47493 * 174.20613 * 23 21 9 48 48 H 1.07999 * 120.00161 * 179.73359 * 24 8 7 49 49 H 1.07993 * 120.00705 * 0.02562 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0724 2.8632 0.0000 6 6 4.3034 3.5142 1.1974 7 6 4.7637 4.8176 1.1979 8 6 4.9940 5.4698 0.0010 9 6 5.4964 6.8906 0.0017 10 1 5.9489 7.1156 0.9674 11 7 6.4989 7.0560 -1.0593 12 6 7.4215 8.1551 -0.7451 13 6 8.4974 8.2244 -1.7980 14 1 8.4962 7.5218 -2.6184 15 6 9.4839 9.1839 -1.7136 16 7 9.4856 10.0391 -0.7145 17 14 10.8179 9.2693 -3.0184 18 1 10.1972 9.5088 -4.3461 19 1 11.7505 10.3805 -2.7009 20 1 11.5662 7.9869 -3.0459 21 6 4.3271 7.8450 -0.2484 22 6 3.7010 7.5389 -1.6104 23 6 3.2762 7.6625 0.8485 24 6 4.7586 4.8205 -1.1964 25 6 4.3028 3.5153 -1.1969 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 3.9330 0.9287 -0.8908 34 1 3.9338 0.9284 0.8891 35 1 4.1234 3.0047 2.1324 36 1 4.9438 5.3263 2.1334 37 1 7.0020 6.1960 -1.2186 38 1 6.8719 9.0962 -0.7248 39 1 7.8774 7.9795 0.2292 40 1 10.1794 10.7144 -0.6552 41 1 4.6886 8.8732 -0.2376 42 1 2.8676 8.2186 -1.7883 43 1 3.3394 6.5106 -1.6212 44 1 4.4496 7.6690 -2.3919 45 1 2.8407 6.6662 0.7723 46 1 3.7461 7.7798 1.8250 47 1 2.4932 8.4113 0.7298 48 1 4.9344 5.3314 -2.1314 49 1 4.1224 3.0069 -2.1324 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000501730787.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:40 Heat of formation + Delta-G solvation = -16.019051 kcal Electronic energy + Delta-G solvation = -23013.037528 eV Core-core repulsion = 19938.164597 eV Total energy + Delta-G solvation = -3074.872931 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.76658 -37.23538 -35.51552 -33.59336 -32.17336 -31.74401 -30.76443 -28.82551 -26.79725 -26.65771 -24.69460 -23.29608 -22.49877 -21.50220 -21.36276 -20.60174 -18.85460 -16.74235 -15.92660 -15.63657 -15.10728 -15.04688 -14.73710 -14.49439 -14.24137 -14.08292 -13.54186 -13.30347 -13.24098 -13.00411 -12.80827 -12.50945 -12.15969 -11.97792 -11.93419 -11.69457 -11.51826 -11.50355 -11.32268 -11.20051 -10.88938 -10.84407 -10.77691 -10.69327 -10.58713 -10.40951 -10.33662 -10.05515 -9.73080 -9.16274 -8.64020 -8.47496 -8.22762 -7.27194 -6.02346 -4.04198 1.55858 1.64981 3.33973 3.37822 3.40823 3.95930 4.43615 4.57870 4.68377 4.85506 4.94741 5.03118 5.07998 5.15234 5.22617 5.31447 5.33767 5.47087 5.49135 5.50109 5.55083 5.56718 5.58912 5.71878 5.76381 5.82599 5.89599 5.94096 5.98098 6.06541 6.08215 6.12905 6.23998 6.29058 6.29201 6.32048 6.47063 6.55370 6.64040 6.79610 6.85728 6.92274 6.97527 7.25983 7.30642 7.47136 7.79295 8.14681 8.40668 8.63320 9.05081 9.60543 11.08726 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.023042 B = 0.003079 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.882584 B = 9090.608233 C = 9645.162425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.114 4.114 4 C -0.078 4.078 5 C -0.093 4.093 6 C -0.123 4.123 7 C -0.114 4.114 8 C -0.072 4.072 9 C 0.127 3.873 10 H 0.041 0.959 11 N -0.680 5.680 12 C 0.196 3.804 13 C -0.515 4.515 14 H 0.061 0.939 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.898 3.102 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.277 1.277 21 C -0.078 4.078 22 C -0.139 4.139 23 C -0.145 4.145 24 C -0.095 4.095 25 C -0.123 4.123 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.331 0.669 38 H 0.029 0.971 39 H -0.015 1.015 40 H 0.262 0.738 41 H 0.073 0.927 42 H 0.037 0.963 43 H 0.051 0.949 44 H 0.073 0.927 45 H 0.052 0.948 46 H 0.048 0.952 47 H 0.049 0.951 48 H 0.134 0.866 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.117 -16.230 3.177 23.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.151 4.151 4 C -0.115 4.115 5 C -0.093 4.093 6 C -0.141 4.141 7 C -0.132 4.132 8 C -0.072 4.072 9 C 0.017 3.983 10 H 0.059 0.941 11 N -0.310 5.310 12 C 0.069 3.931 13 C -0.554 4.554 14 H 0.079 0.921 15 C -0.145 4.145 16 N -0.537 5.537 17 Si 0.726 3.274 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.203 1.203 21 C -0.097 4.097 22 C -0.197 4.197 23 C -0.203 4.203 24 C -0.113 4.113 25 C -0.141 4.141 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.148 0.852 38 H 0.047 0.953 39 H 0.003 0.997 40 H 0.071 0.929 41 H 0.091 0.909 42 H 0.056 0.944 43 H 0.070 0.930 44 H 0.092 0.908 45 H 0.071 0.929 46 H 0.067 0.933 47 H 0.068 0.932 48 H 0.152 0.848 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -16.410 -15.664 2.857 22.865 hybrid contribution 1.382 -0.142 0.173 1.400 sum -15.028 -15.806 3.030 22.020 Atomic orbital electron populations 1.21779 0.95982 1.01416 1.01881 1.21558 0.95797 0.97029 1.01916 1.21602 0.94629 0.96436 1.02445 1.20572 0.95387 0.93073 1.02469 1.19764 1.00283 0.95921 0.93334 1.20873 1.01141 0.94917 0.97150 1.21027 0.99901 0.94647 0.97655 1.20078 0.98266 0.95925 0.92972 1.20500 0.93627 0.89611 0.94595 0.94090 1.60775 1.18677 1.10019 1.41565 1.19582 0.89525 0.89187 0.94792 1.21150 1.09083 1.15614 1.09512 0.92092 1.24978 0.98043 0.95596 0.95899 1.69955 1.34471 1.18502 1.30735 0.86559 0.81385 0.77479 0.81954 1.20169 1.21378 1.20306 1.20984 0.94136 0.99457 0.95125 1.21840 0.99861 1.00229 0.97720 1.21865 0.98694 1.01194 0.98549 1.21187 0.97522 0.93897 0.98687 1.21008 1.00933 0.95066 0.97139 0.92928 0.92779 0.92735 0.92070 0.92127 0.91928 0.91838 0.91311 0.91432 0.86811 0.86605 0.85182 0.95302 0.99692 0.92888 0.90907 0.94428 0.93044 0.90842 0.92879 0.93274 0.93237 0.84802 0.86638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.65 16 2 C -0.13 -0.89 5.93 -26.73 -0.16 -1.05 16 3 C -0.11 -0.95 5.20 -26.73 -0.14 -1.09 16 4 C -0.08 -0.72 5.34 -27.88 -0.15 -0.87 16 5 C -0.09 -1.10 5.13 -104.62 -0.54 -1.64 16 6 C -0.12 -1.52 9.70 -39.59 -0.38 -1.90 16 7 C -0.11 -1.59 8.87 -39.59 -0.35 -1.94 16 8 C -0.07 -1.11 3.57 -104.63 -0.37 -1.48 16 9 C 0.13 2.26 2.13 -68.86 -0.15 2.12 16 10 H 0.04 0.79 7.58 -51.93 -0.39 0.40 16 11 N -0.68 -14.26 4.94 -109.23 -0.54 -14.80 16 12 C 0.20 5.09 5.29 -4.98 -0.03 5.06 16 13 C -0.51 -14.53 9.27 -34.44 -0.32 -14.85 16 14 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -26.87 13.29 55.43 0.74 -26.14 16 17 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 C -0.08 -1.29 2.84 -90.62 -0.26 -1.55 16 22 C -0.14 -2.18 7.97 37.16 0.30 -1.88 16 23 C -0.15 -2.02 8.59 37.16 0.32 -1.71 16 24 C -0.09 -1.39 6.81 -39.58 -0.27 -1.65 16 25 C -0.12 -1.58 9.70 -39.58 -0.38 -1.96 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 34 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 35 H 0.11 1.19 8.06 -52.49 -0.42 0.76 16 36 H 0.12 1.52 8.04 -52.48 -0.42 1.10 16 37 H 0.33 6.90 7.91 -39.29 -0.31 6.59 16 38 H 0.03 0.81 7.58 -51.93 -0.39 0.42 16 39 H -0.01 -0.41 7.95 -51.93 -0.41 -0.82 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.07 1.36 7.58 -51.93 -0.39 0.97 16 42 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.05 0.75 5.58 -51.93 -0.29 0.46 16 44 H 0.07 1.29 7.59 -51.93 -0.39 0.90 16 45 H 0.05 0.72 7.02 -51.93 -0.36 0.36 16 46 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.13 2.04 6.86 -52.49 -0.36 1.68 16 49 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 384.30 15.07 5.79 5.79 Total: -1.00 -29.08 384.30 -10.83 -39.91 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -9.19 Total: 4.01 kcal Atomic # 6 Polarization: -22.93 SS G_CDS: -2.61 Total: -25.54 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: 0.20 Total: -40.94 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.08 -10.83 -39.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000501730787.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.891 kcal (2) G-P(sol) polarization free energy of solvation -29.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds