Wall clock time and date at job start Tue Mar 31 2020 05:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47085 * 2 1 4 4 C 1.52999 * 109.46652 * 180.02562 * 3 2 1 5 5 C 1.50706 * 109.46826 * 180.02562 * 4 3 2 6 6 C 1.38229 * 120.00239 * 90.00302 * 5 4 3 7 7 C 1.38235 * 119.99903 * 180.02562 * 6 5 4 8 8 C 1.38228 * 120.00148 * 359.95011 * 7 6 5 9 9 C 1.50703 * 119.99735 * 180.02562 * 8 7 6 10 10 H 1.08992 * 109.47476 * 19.99734 * 9 8 7 11 11 N 1.46902 * 109.47047 * 139.99824 * 9 8 7 12 12 C 1.46899 * 111.00090 * 205.35201 * 11 9 8 13 13 C 1.50700 * 109.47137 * 175.56622 * 12 11 9 14 14 H 1.08007 * 119.99736 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00069 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99874 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00071 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47217 * 60.00215 * 17 15 13 19 19 H 1.48500 * 109.47353 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47204 * 300.00081 * 17 15 13 21 21 C 1.52997 * 109.46749 * 259.99543 * 9 8 7 22 22 C 1.52997 * 109.47753 * 299.41502 * 21 9 8 23 23 C 1.52998 * 109.47377 * 59.41831 * 21 9 8 24 24 C 1.38232 * 120.00068 * 0.27847 * 8 7 6 25 25 C 1.38237 * 119.99503 * 269.97607 * 5 4 3 26 26 H 1.08995 * 109.47138 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46777 * 300.00011 * 1 2 3 28 28 H 1.08998 * 109.47107 * 59.99436 * 1 2 3 29 29 H 1.08998 * 109.47044 * 240.00030 * 2 1 3 30 30 H 1.09003 * 109.47128 * 120.00071 * 2 1 3 31 31 H 1.08998 * 109.47155 * 60.00098 * 3 2 1 32 32 H 1.09003 * 109.47195 * 300.00030 * 3 2 1 33 33 H 1.08998 * 109.47345 * 60.00111 * 4 3 2 34 34 H 1.09003 * 109.47260 * 299.99887 * 4 3 2 35 35 H 1.08000 * 119.99893 * 359.97176 * 6 5 4 36 36 H 1.08003 * 119.99509 * 179.97438 * 7 6 5 37 37 H 1.00900 * 111.00000 * 329.30996 * 11 9 8 38 38 H 1.09001 * 109.46982 * 295.56401 * 12 11 9 39 39 H 1.08993 * 109.46876 * 55.56105 * 12 11 9 40 40 H 0.97003 * 120.00061 * 180.02562 * 16 15 13 41 41 H 1.09001 * 109.47003 * 179.41589 * 21 9 8 42 42 H 1.09001 * 109.47456 * 179.97438 * 22 21 9 43 43 H 1.09001 * 109.46795 * 59.99959 * 22 21 9 44 44 H 1.09002 * 109.47240 * 300.00259 * 22 21 9 45 45 H 1.08993 * 109.47159 * 294.21057 * 23 21 9 46 46 H 1.09004 * 109.47025 * 54.20521 * 23 21 9 47 47 H 1.08992 * 109.47493 * 174.20613 * 23 21 9 48 48 H 1.07999 * 120.00161 * 179.73359 * 24 8 7 49 49 H 1.07993 * 120.00705 * 0.02562 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0724 2.8632 0.0000 6 6 4.3034 3.5142 1.1974 7 6 4.7637 4.8176 1.1979 8 6 4.9940 5.4698 0.0010 9 6 5.4964 6.8906 0.0017 10 1 5.9489 7.1156 0.9674 11 7 6.4989 7.0560 -1.0593 12 6 7.4215 8.1551 -0.7451 13 6 8.4974 8.2244 -1.7980 14 1 8.4962 7.5218 -2.6184 15 6 9.4839 9.1839 -1.7136 16 7 9.4856 10.0391 -0.7145 17 14 10.8179 9.2693 -3.0184 18 1 10.1972 9.5088 -4.3461 19 1 11.7505 10.3805 -2.7009 20 1 11.5662 7.9869 -3.0459 21 6 4.3271 7.8450 -0.2484 22 6 3.7010 7.5389 -1.6104 23 6 3.2762 7.6625 0.8485 24 6 4.7586 4.8205 -1.1964 25 6 4.3028 3.5153 -1.1969 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 3.9330 0.9287 -0.8908 34 1 3.9338 0.9284 0.8891 35 1 4.1234 3.0047 2.1324 36 1 4.9438 5.3263 2.1334 37 1 7.0020 6.1960 -1.2186 38 1 6.8719 9.0962 -0.7248 39 1 7.8774 7.9795 0.2292 40 1 10.1794 10.7144 -0.6552 41 1 4.6886 8.8732 -0.2376 42 1 2.8676 8.2186 -1.7883 43 1 3.3394 6.5106 -1.6212 44 1 4.4496 7.6690 -2.3919 45 1 2.8407 6.6662 0.7723 46 1 3.7461 7.7798 1.8250 47 1 2.4932 8.4113 0.7298 48 1 4.9344 5.3314 -2.1314 49 1 4.1224 3.0069 -2.1324 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000501730787.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:39 Heat of formation + Delta-G solvation = -29.364514 kcal Electronic energy + Delta-G solvation = -23013.616231 eV Core-core repulsion = 19938.164597 eV Total energy + Delta-G solvation = -3075.451634 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.92021 -38.45644 -36.36750 -35.46571 -33.78474 -32.92882 -31.82589 -29.96804 -28.40807 -27.94118 -26.04827 -24.32403 -23.95416 -23.08378 -22.07170 -21.56197 -20.20990 -18.74271 -17.10916 -16.81333 -16.57982 -16.20159 -16.11797 -15.87758 -15.41765 -14.88575 -14.86727 -14.73484 -14.26508 -14.07649 -13.97966 -13.68078 -13.55000 -13.52178 -13.17847 -12.93847 -12.79230 -12.66982 -12.60219 -12.37488 -12.15407 -12.08581 -12.01868 -11.81690 -11.76318 -11.67588 -11.53861 -11.33846 -11.26377 -11.12872 -10.66265 -9.69885 -9.31502 -9.10374 -8.23172 -6.34370 0.48831 0.59232 1.39743 1.43474 1.51341 2.38971 2.90008 3.10157 3.51267 3.74218 3.89828 3.99724 4.11744 4.19540 4.21273 4.26309 4.29193 4.41649 4.46430 4.49400 4.62051 4.69336 4.81305 4.83901 4.85678 4.88173 4.91864 5.01315 5.04425 5.05325 5.09860 5.12268 5.17020 5.22298 5.28203 5.29019 5.31019 5.35258 5.43400 5.49230 5.54798 5.57413 5.60516 5.63695 5.80718 5.83270 6.03685 6.20210 6.45483 6.71783 6.89192 7.36427 8.88374 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.023042 B = 0.003079 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.882584 B = 9090.608233 C = 9645.162425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.109 4.109 4 C -0.075 4.075 5 C -0.086 4.086 6 C -0.121 4.121 7 C -0.121 4.121 8 C -0.087 4.087 9 C 0.129 3.871 10 H 0.020 0.980 11 N -0.671 5.671 12 C 0.215 3.785 13 C -0.536 4.536 14 H 0.065 0.935 15 C 0.001 3.999 16 N -0.934 5.934 17 Si 0.973 3.027 18 H -0.268 1.268 19 H -0.283 1.283 20 H -0.267 1.267 21 C -0.079 4.079 22 C -0.130 4.130 23 C -0.134 4.134 24 C -0.104 4.104 25 C -0.124 4.124 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.138 0.862 36 H 0.119 0.881 37 H 0.332 0.668 38 H 0.000 1.000 39 H -0.046 1.046 40 H 0.265 0.735 41 H 0.041 0.959 42 H 0.052 0.948 43 H 0.064 0.936 44 H 0.048 0.952 45 H 0.061 0.939 46 H 0.049 0.951 47 H 0.063 0.937 48 H 0.122 0.878 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.026 -18.582 2.646 25.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.161 4.161 3 C -0.147 4.147 4 C -0.112 4.112 5 C -0.086 4.086 6 C -0.139 4.139 7 C -0.139 4.139 8 C -0.088 4.088 9 C 0.019 3.981 10 H 0.038 0.962 11 N -0.301 5.301 12 C 0.087 3.913 13 C -0.574 4.574 14 H 0.083 0.917 15 C -0.197 4.197 16 N -0.574 5.574 17 Si 0.797 3.203 18 H -0.192 1.192 19 H -0.208 1.208 20 H -0.191 1.191 21 C -0.099 4.099 22 C -0.187 4.187 23 C -0.192 4.192 24 C -0.122 4.122 25 C -0.142 4.142 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.156 0.844 36 H 0.137 0.863 37 H 0.149 0.851 38 H 0.018 0.982 39 H -0.028 1.028 40 H 0.073 0.927 41 H 0.059 0.941 42 H 0.071 0.929 43 H 0.082 0.918 44 H 0.067 0.933 45 H 0.080 0.920 46 H 0.068 0.932 47 H 0.083 0.917 48 H 0.140 0.860 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -17.341 -18.034 2.325 25.126 hybrid contribution 1.603 0.531 0.388 1.733 sum -15.737 -17.503 2.713 23.693 Atomic orbital electron populations 1.21789 0.95758 1.01890 1.01744 1.21537 0.95989 0.96140 1.02394 1.21552 0.93896 0.97256 1.01986 1.20617 0.95869 0.91236 1.03490 1.20106 0.98668 0.97109 0.92707 1.21148 1.00123 0.94140 0.98513 1.21120 1.00153 0.95516 0.97133 1.19799 1.00328 0.94463 0.94197 1.20486 0.92958 0.92312 0.92298 0.96238 1.60662 1.17743 1.08733 1.42927 1.19173 0.89528 0.89660 0.92954 1.21515 1.09905 1.15974 1.09991 0.91717 1.25959 1.00584 0.94974 0.98214 1.70094 1.35469 1.19138 1.32674 0.85386 0.78086 0.77906 0.78917 1.19247 1.20821 1.19138 1.20976 0.94579 0.97241 0.97058 1.21737 0.99478 1.01399 0.96077 1.21761 0.98007 1.02157 0.97294 1.21120 0.98454 0.94889 0.97769 1.21224 1.00229 0.94245 0.98531 0.92190 0.92869 0.92956 0.91676 0.91574 0.92292 0.92437 0.90455 0.90315 0.84440 0.86328 0.85066 0.98208 1.02848 0.92653 0.94085 0.92922 0.91751 0.93292 0.91980 0.93233 0.91749 0.85972 0.84738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.91 71.98 0.71 -0.99 16 2 C -0.12 -1.41 5.93 30.60 0.18 -1.23 16 3 C -0.11 -1.53 5.20 30.59 0.16 -1.37 16 4 C -0.07 -1.14 5.34 29.85 0.16 -0.98 16 5 C -0.09 -1.81 5.13 -19.87 -0.10 -1.91 16 6 C -0.12 -2.72 9.70 22.27 0.22 -2.51 16 7 C -0.12 -3.27 8.87 22.27 0.20 -3.07 16 8 C -0.09 -2.70 3.57 -19.87 -0.07 -2.77 16 9 C 0.13 4.83 2.13 44.17 0.09 4.93 16 10 H 0.02 0.81 7.58 -2.39 -0.02 0.79 16 11 N -0.67 -29.61 4.94 -499.48 -2.47 -32.07 16 12 C 0.21 11.84 5.29 85.56 0.45 12.29 16 13 C -0.54 -31.11 9.27 25.60 0.24 -30.88 16 14 H 0.06 3.63 7.81 -2.91 -0.02 3.60 16 15 C 0.00 0.05 5.46 84.65 0.46 0.52 16 16 N -0.93 -57.48 13.29 21.45 0.28 -57.19 16 17 Si 0.97 44.97 29.54 68.60 2.03 46.99 16 18 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 19 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 21 C -0.08 -2.73 2.84 -10.80 -0.03 -2.76 16 22 C -0.13 -4.10 7.97 71.98 0.57 -3.53 16 23 C -0.13 -3.70 8.59 71.98 0.62 -3.08 16 24 C -0.10 -2.98 6.81 22.27 0.15 -2.83 16 25 C -0.12 -2.93 9.70 22.27 0.22 -2.72 16 26 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 28 H 0.05 0.59 8.14 -2.39 -0.02 0.58 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.08 1.09 8.09 -2.39 -0.02 1.07 16 34 H 0.08 1.07 8.09 -2.39 -0.02 1.05 16 35 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 36 H 0.12 3.07 8.04 -2.91 -0.02 3.05 16 37 H 0.33 14.41 7.91 -89.69 -0.71 13.70 16 38 H 0.00 -0.01 7.58 -2.39 -0.02 -0.03 16 39 H -0.05 -2.77 7.95 -2.39 -0.02 -2.79 16 40 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 41 H 0.04 1.64 7.58 -2.39 -0.02 1.63 16 42 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.06 1.86 5.58 -2.39 -0.01 1.84 16 44 H 0.05 1.77 7.59 -2.39 -0.02 1.75 16 45 H 0.06 1.60 7.02 -2.39 -0.02 1.59 16 46 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 47 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.12 3.75 6.86 -2.91 -0.02 3.73 16 49 H 0.13 2.62 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -64.15 384.30 4.25 -59.91 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: 0.17 Total: 25.26 kcal Atomic # 6 Polarization: -47.12 SS G_CDS: 4.23 Total: -42.90 kcal Atomic # 7 Polarization: -87.09 SS G_CDS: -2.18 Total: -89.27 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -64.15 4.25 -59.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000501730787.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.541 kcal (2) G-P(sol) polarization free energy of solvation -64.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds