Wall clock time and date at job start Tue Mar 31 2020 05:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46972 * 2 1 4 4 C 1.52996 * 109.47266 * 179.97438 * 3 2 1 5 5 C 1.50703 * 109.47352 * 179.97438 * 4 3 2 6 6 C 1.38238 * 120.00039 * 269.72634 * 5 4 3 7 7 C 1.38228 * 119.99993 * 179.74172 * 6 5 4 8 8 C 1.38239 * 120.00289 * 0.55458 * 7 6 5 9 9 C 1.50690 * 120.00355 * 179.72093 * 8 7 6 10 10 H 1.09001 * 109.47310 * 159.97308 * 9 8 7 11 11 N 1.46911 * 109.47073 * 39.98018 * 9 8 7 12 12 C 1.46896 * 110.99896 * 83.56423 * 11 9 8 13 13 C 1.50701 * 109.46933 * 182.65199 * 12 11 9 14 14 H 1.08002 * 119.99863 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00279 * 179.97438 * 13 12 11 16 16 N 1.31518 * 120.00432 * 179.97438 * 15 13 12 17 17 Si 1.86809 * 119.99824 * 0.02562 * 15 13 12 18 18 H 1.48496 * 109.47120 * 89.99260 * 17 15 13 19 19 H 1.48498 * 109.46734 * 209.99494 * 17 15 13 20 20 H 1.48499 * 109.46812 * 329.99627 * 17 15 13 21 21 C 1.52997 * 109.47566 * 279.97905 * 9 8 7 22 22 C 1.52996 * 109.47239 * 175.09475 * 21 9 8 23 23 C 1.53002 * 109.46747 * 295.09492 * 21 9 8 24 24 C 1.38239 * 119.99448 * 359.69985 * 8 7 6 25 25 C 1.38234 * 120.00114 * 89.99721 * 5 4 3 26 26 H 1.08999 * 109.46950 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47277 * 300.00077 * 1 2 3 28 28 H 1.08996 * 109.47090 * 60.00101 * 1 2 3 29 29 H 1.08994 * 109.47531 * 239.99511 * 2 1 3 30 30 H 1.09004 * 109.46856 * 119.99312 * 2 1 3 31 31 H 1.09007 * 109.47350 * 59.99661 * 3 2 1 32 32 H 1.08996 * 109.47131 * 299.99874 * 3 2 1 33 33 H 1.09005 * 109.47547 * 299.99761 * 4 3 2 34 34 H 1.09000 * 109.47441 * 60.00197 * 4 3 2 35 35 H 1.07999 * 119.99547 * 359.97438 * 6 5 4 36 36 H 1.08005 * 119.99895 * 180.27490 * 7 6 5 37 37 H 1.00899 * 110.99548 * 319.60983 * 11 9 8 38 38 H 1.08999 * 109.47074 * 302.64646 * 12 11 9 39 39 H 1.08999 * 109.47710 * 62.65086 * 12 11 9 40 40 H 0.96995 * 120.00300 * 179.97438 * 16 15 13 41 41 H 1.09007 * 109.47084 * 55.09256 * 21 9 8 42 42 H 1.08995 * 109.47572 * 54.83733 * 22 21 9 43 43 H 1.09002 * 109.47097 * 174.84013 * 22 21 9 44 44 H 1.09006 * 109.47189 * 294.83673 * 22 21 9 45 45 H 1.08996 * 109.47048 * 59.99829 * 23 21 9 46 46 H 1.09007 * 109.46874 * 179.97438 * 23 21 9 47 47 H 1.08993 * 109.46972 * 299.99703 * 23 21 9 48 48 H 1.07995 * 119.99557 * 180.02562 * 24 8 7 49 49 H 1.08000 * 119.99997 * 0.02562 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0722 2.8634 0.0000 6 6 4.3085 3.5125 -1.1974 7 6 4.7642 4.8175 -1.1980 8 6 4.9946 5.4698 -0.0012 9 6 5.4973 6.8904 -0.0018 10 1 5.2865 7.3508 0.9634 11 7 4.8219 7.6483 -1.0638 12 6 3.5159 8.1431 -0.6083 13 6 2.8264 8.8579 -1.7417 14 1 3.3099 8.9363 -2.7043 15 6 1.5780 9.4108 -1.5503 16 7 0.9764 10.0350 -2.5393 17 14 0.7415 9.2745 0.1145 18 1 1.1140 10.4422 0.9527 19 1 -0.7315 9.2490 -0.0724 20 1 1.1770 8.0238 0.7863 21 6 7.0067 6.8972 -0.2515 22 6 7.4969 8.3413 -0.3739 23 6 7.7199 6.2138 0.9170 24 6 4.7633 4.8189 1.1963 25 6 4.3021 3.5158 1.1968 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.9330 0.9289 0.8909 34 1 3.9337 0.9287 -0.8891 35 1 4.1335 3.0011 -2.1325 36 1 4.9446 5.3261 -2.1336 37 1 4.7263 7.0921 -1.9001 38 1 2.9028 7.3031 -0.2820 39 1 3.6586 8.8333 0.2232 40 1 0.0980 10.4236 -2.4047 41 1 7.2248 6.3599 -1.1746 42 1 7.1980 8.9028 0.5112 43 1 8.5835 8.3501 -0.4600 44 1 7.0585 8.7999 -1.2603 45 1 7.3706 5.1850 1.0042 46 1 8.7953 6.2182 0.7390 47 1 7.5019 6.7510 1.8399 48 1 4.9428 5.3287 2.1313 49 1 4.1220 3.0071 2.1324 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000501730795.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:43 Heat of formation + Delta-G solvation = -13.964269 kcal Electronic energy + Delta-G solvation = -23225.123575 eV Core-core repulsion = 20150.339746 eV Total energy + Delta-G solvation = -3074.783829 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.74783 -37.27538 -35.49611 -33.78066 -32.36611 -31.76657 -30.70432 -28.93786 -27.31548 -26.52487 -24.77348 -23.16890 -22.68361 -21.33295 -21.00538 -20.51011 -19.43432 -16.88909 -16.37094 -15.81825 -15.15327 -14.89414 -14.70674 -14.29296 -14.20976 -13.85960 -13.84390 -13.42031 -13.25774 -12.90408 -12.78600 -12.57963 -12.42587 -12.16068 -11.89450 -11.86151 -11.72484 -11.56514 -11.35062 -11.25171 -10.92689 -10.81367 -10.77338 -10.75681 -10.61446 -10.38842 -10.30434 -10.20308 -9.78037 -9.26008 -8.69324 -8.58194 -8.25373 -7.47512 -6.04792 -4.02289 1.54815 1.62487 3.29690 3.36745 3.40658 3.93799 4.43578 4.63366 4.74694 4.89577 4.91570 4.96955 5.02779 5.13270 5.20533 5.26274 5.28797 5.33511 5.43037 5.55395 5.55798 5.59922 5.64041 5.68017 5.71307 5.81439 5.82914 5.90422 5.97337 5.98895 6.08555 6.10094 6.15206 6.19501 6.23243 6.28865 6.31040 6.40287 6.62714 6.65129 6.77464 6.80994 6.85172 6.90137 7.10500 7.22921 7.62300 7.91051 8.33552 8.65713 9.02642 9.57789 11.08505 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.009743 B = 0.005178 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2873.190255 B = 5405.704776 C = 7575.369031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.117 4.117 4 C -0.076 4.076 5 C -0.094 4.094 6 C -0.113 4.113 7 C -0.109 4.109 8 C -0.097 4.097 9 C 0.124 3.876 10 H 0.077 0.923 11 N -0.667 5.667 12 C 0.165 3.835 13 C -0.515 4.515 14 H 0.078 0.922 15 C 0.070 3.930 16 N -0.901 5.901 17 Si 0.874 3.126 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.267 1.267 21 C -0.077 4.077 22 C -0.133 4.133 23 C -0.147 4.147 24 C -0.113 4.113 25 C -0.119 4.119 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.117 0.883 36 H 0.123 0.877 37 H 0.336 0.664 38 H -0.014 1.014 39 H 0.020 0.980 40 H 0.263 0.737 41 H 0.065 0.935 42 H 0.047 0.953 43 H 0.039 0.961 44 H 0.073 0.927 45 H 0.053 0.947 46 H 0.050 0.950 47 H 0.051 0.949 48 H 0.116 0.884 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.832 -17.960 7.336 20.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.154 4.154 4 C -0.113 4.113 5 C -0.094 4.094 6 C -0.131 4.131 7 C -0.127 4.127 8 C -0.099 4.099 9 C 0.013 3.987 10 H 0.095 0.905 11 N -0.297 5.297 12 C 0.037 3.963 13 C -0.553 4.553 14 H 0.096 0.904 15 C -0.131 4.131 16 N -0.540 5.540 17 Si 0.701 3.299 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.192 1.192 21 C -0.096 4.096 22 C -0.190 4.190 23 C -0.205 4.205 24 C -0.132 4.132 25 C -0.137 4.137 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.135 0.865 36 H 0.141 0.859 37 H 0.155 0.845 38 H 0.003 0.997 39 H 0.038 0.962 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.067 0.933 43 H 0.058 0.942 44 H 0.092 0.908 45 H 0.072 0.928 46 H 0.069 0.931 47 H 0.070 0.930 48 H 0.134 0.866 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 7.974 -17.235 7.415 20.386 hybrid contribution -1.241 -0.762 0.901 1.713 sum 6.733 -17.997 8.316 20.937 Atomic orbital electron populations 1.21782 0.95915 1.01376 1.02076 1.21539 0.95891 0.96908 1.01762 1.21627 0.94498 0.96529 1.02758 1.20562 0.95556 0.92854 1.02352 1.19777 1.00216 0.96124 0.93271 1.20941 0.99988 0.94920 0.97289 1.20965 0.99284 0.94496 0.97981 1.20862 0.98097 0.97767 0.93142 1.20738 0.93650 0.87181 0.97157 0.90491 1.60731 1.24369 1.39508 1.05082 1.19996 0.85337 0.94029 0.96918 1.21053 1.01397 1.34570 0.98257 0.90364 1.24872 0.96996 0.94806 0.96451 1.69897 1.15374 1.37181 1.31532 0.86870 0.78810 0.79064 0.85129 1.20149 1.21253 1.19185 1.21028 0.93366 0.97053 0.98156 1.21655 0.98653 0.95571 1.03155 1.21870 0.99683 1.00491 0.98412 1.21006 0.99908 0.94685 0.97567 1.20922 1.00588 0.95024 0.97191 0.92939 0.92747 0.92600 0.92107 0.92215 0.91864 0.91633 0.91444 0.91325 0.86464 0.85919 0.84487 0.99665 0.96182 0.92699 0.91678 0.93342 0.94193 0.90837 0.92800 0.93074 0.92998 0.86567 0.86736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 37.16 0.37 -0.93 16 2 C -0.12 -1.05 5.93 -26.73 -0.16 -1.21 16 3 C -0.12 -1.20 5.20 -26.73 -0.14 -1.34 16 4 C -0.08 -0.78 5.35 -27.88 -0.15 -0.92 16 5 C -0.09 -1.22 5.13 -104.62 -0.54 -1.75 16 6 C -0.11 -1.58 9.70 -39.58 -0.38 -1.97 16 7 C -0.11 -1.69 9.13 -39.58 -0.36 -2.06 16 8 C -0.10 -1.54 3.88 -104.63 -0.41 -1.95 16 9 C 0.12 2.07 1.81 -68.86 -0.12 1.95 16 10 H 0.08 1.35 7.72 -51.93 -0.40 0.95 16 11 N -0.67 -13.53 5.36 -109.22 -0.59 -14.12 16 12 C 0.16 4.03 4.30 -4.98 -0.02 4.01 16 13 C -0.51 -14.77 9.84 -34.44 -0.34 -15.11 16 14 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 15 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 16 N -0.90 -27.89 13.96 55.43 0.77 -27.11 16 17 Si 0.87 22.00 27.47 -169.99 -4.67 17.33 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.27 -6.58 6.54 56.52 0.37 -6.21 16 21 C -0.08 -1.09 2.66 -90.62 -0.24 -1.33 16 22 C -0.13 -1.92 8.89 37.16 0.33 -1.59 16 23 C -0.15 -1.78 8.91 37.16 0.33 -1.45 16 24 C -0.11 -1.65 8.76 -39.58 -0.35 -2.00 16 25 C -0.12 -1.58 9.70 -39.58 -0.38 -1.97 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.70 8.14 -51.92 -0.42 0.27 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 34 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 35 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 36 H 0.12 1.88 6.51 -52.48 -0.34 1.53 16 37 H 0.34 6.71 6.34 -39.29 -0.25 6.46 16 38 H -0.01 -0.36 6.96 -51.93 -0.36 -0.73 16 39 H 0.02 0.50 7.54 -51.93 -0.39 0.11 16 40 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.07 1.21 7.66 -51.93 -0.40 0.81 16 45 H 0.05 0.66 6.75 -51.93 -0.35 0.31 16 46 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.12 1.54 8.04 -52.49 -0.42 1.12 16 49 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 385.98 15.07 5.82 5.82 Total: -1.00 -30.40 385.98 -10.59 -40.99 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -9.26 Total: 4.74 kcal Atomic # 6 Polarization: -24.98 SS G_CDS: -2.66 Total: -27.64 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: 0.19 Total: -41.24 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.40 -10.59 -40.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000501730795.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.025 kcal (2) G-P(sol) polarization free energy of solvation -30.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds