Wall clock time and date at job start Tue Mar 31 2020 05:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46972 * 2 1 4 4 C 1.52996 * 109.47266 * 179.97438 * 3 2 1 5 5 C 1.50703 * 109.47352 * 179.97438 * 4 3 2 6 6 C 1.38238 * 120.00039 * 269.72634 * 5 4 3 7 7 C 1.38228 * 119.99993 * 179.74172 * 6 5 4 8 8 C 1.38239 * 120.00289 * 0.55458 * 7 6 5 9 9 C 1.50690 * 120.00355 * 179.72093 * 8 7 6 10 10 H 1.09001 * 109.47310 * 159.97308 * 9 8 7 11 11 N 1.46911 * 109.47073 * 39.98018 * 9 8 7 12 12 C 1.46896 * 110.99896 * 83.56423 * 11 9 8 13 13 C 1.50701 * 109.46933 * 182.65199 * 12 11 9 14 14 H 1.08002 * 119.99863 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00279 * 179.97438 * 13 12 11 16 16 N 1.31518 * 120.00432 * 179.97438 * 15 13 12 17 17 Si 1.86809 * 119.99824 * 0.02562 * 15 13 12 18 18 H 1.48496 * 109.47120 * 89.99260 * 17 15 13 19 19 H 1.48498 * 109.46734 * 209.99494 * 17 15 13 20 20 H 1.48499 * 109.46812 * 329.99627 * 17 15 13 21 21 C 1.52997 * 109.47566 * 279.97905 * 9 8 7 22 22 C 1.52996 * 109.47239 * 175.09475 * 21 9 8 23 23 C 1.53002 * 109.46747 * 295.09492 * 21 9 8 24 24 C 1.38239 * 119.99448 * 359.69985 * 8 7 6 25 25 C 1.38234 * 120.00114 * 89.99721 * 5 4 3 26 26 H 1.08999 * 109.46950 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47277 * 300.00077 * 1 2 3 28 28 H 1.08996 * 109.47090 * 60.00101 * 1 2 3 29 29 H 1.08994 * 109.47531 * 239.99511 * 2 1 3 30 30 H 1.09004 * 109.46856 * 119.99312 * 2 1 3 31 31 H 1.09007 * 109.47350 * 59.99661 * 3 2 1 32 32 H 1.08996 * 109.47131 * 299.99874 * 3 2 1 33 33 H 1.09005 * 109.47547 * 299.99761 * 4 3 2 34 34 H 1.09000 * 109.47441 * 60.00197 * 4 3 2 35 35 H 1.07999 * 119.99547 * 359.97438 * 6 5 4 36 36 H 1.08005 * 119.99895 * 180.27490 * 7 6 5 37 37 H 1.00899 * 110.99548 * 319.60983 * 11 9 8 38 38 H 1.08999 * 109.47074 * 302.64646 * 12 11 9 39 39 H 1.08999 * 109.47710 * 62.65086 * 12 11 9 40 40 H 0.96995 * 120.00300 * 179.97438 * 16 15 13 41 41 H 1.09007 * 109.47084 * 55.09256 * 21 9 8 42 42 H 1.08995 * 109.47572 * 54.83733 * 22 21 9 43 43 H 1.09002 * 109.47097 * 174.84013 * 22 21 9 44 44 H 1.09006 * 109.47189 * 294.83673 * 22 21 9 45 45 H 1.08996 * 109.47048 * 59.99829 * 23 21 9 46 46 H 1.09007 * 109.46874 * 179.97438 * 23 21 9 47 47 H 1.08993 * 109.46972 * 299.99703 * 23 21 9 48 48 H 1.07995 * 119.99557 * 180.02562 * 24 8 7 49 49 H 1.08000 * 119.99997 * 0.02562 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0722 2.8634 0.0000 6 6 4.3085 3.5125 -1.1974 7 6 4.7642 4.8175 -1.1980 8 6 4.9946 5.4698 -0.0012 9 6 5.4973 6.8904 -0.0018 10 1 5.2865 7.3508 0.9634 11 7 4.8219 7.6483 -1.0638 12 6 3.5159 8.1431 -0.6083 13 6 2.8264 8.8579 -1.7417 14 1 3.3099 8.9363 -2.7043 15 6 1.5780 9.4108 -1.5503 16 7 0.9764 10.0350 -2.5393 17 14 0.7415 9.2745 0.1145 18 1 1.1140 10.4422 0.9527 19 1 -0.7315 9.2490 -0.0724 20 1 1.1770 8.0238 0.7863 21 6 7.0067 6.8972 -0.2515 22 6 7.4969 8.3413 -0.3739 23 6 7.7199 6.2138 0.9170 24 6 4.7633 4.8189 1.1963 25 6 4.3021 3.5158 1.1968 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.9330 0.9289 0.8909 34 1 3.9337 0.9287 -0.8891 35 1 4.1335 3.0011 -2.1325 36 1 4.9446 5.3261 -2.1336 37 1 4.7263 7.0921 -1.9001 38 1 2.9028 7.3031 -0.2820 39 1 3.6586 8.8333 0.2232 40 1 0.0980 10.4236 -2.4047 41 1 7.2248 6.3599 -1.1746 42 1 7.1980 8.9028 0.5112 43 1 8.5835 8.3501 -0.4600 44 1 7.0585 8.7999 -1.2603 45 1 7.3706 5.1850 1.0042 46 1 8.7953 6.2182 0.7390 47 1 7.5019 6.7510 1.8399 48 1 4.9428 5.3287 2.1313 49 1 4.1220 3.0071 2.1324 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000501730795.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:43 Heat of formation + Delta-G solvation = -28.970941 kcal Electronic energy + Delta-G solvation = -23225.774313 eV Core-core repulsion = 20150.339746 eV Total energy + Delta-G solvation = -3075.434567 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.89724 -38.46373 -36.38389 -35.53519 -34.03471 -33.00869 -31.81737 -30.17707 -28.85171 -27.65318 -26.05260 -24.25866 -23.92414 -22.80694 -22.05503 -21.57595 -20.68440 -18.95389 -17.68547 -16.75647 -16.54690 -16.19087 -15.99939 -15.55977 -15.34175 -15.21390 -14.91761 -14.84463 -14.46070 -14.29657 -13.89250 -13.76026 -13.65540 -13.40119 -13.36862 -12.93183 -12.90675 -12.76336 -12.63702 -12.34950 -12.19974 -12.03440 -11.96862 -11.78801 -11.73583 -11.67361 -11.51168 -11.44614 -11.39876 -11.30922 -10.82944 -9.79834 -9.38588 -9.11946 -8.32401 -6.35871 0.44374 0.51935 1.30398 1.31759 1.42890 2.30745 2.83906 3.02069 3.46410 3.71565 3.86116 3.91994 4.08888 4.10877 4.18324 4.22235 4.24136 4.35512 4.42674 4.50560 4.58662 4.62829 4.75532 4.78405 4.80630 4.82269 4.87476 4.91319 4.96039 4.96642 5.07128 5.09839 5.13518 5.16874 5.19378 5.23619 5.29292 5.31219 5.37296 5.49016 5.49539 5.50363 5.55794 5.65672 5.66574 5.74258 5.99953 6.14767 6.53252 6.64598 6.75832 7.29091 8.84291 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.009743 B = 0.005178 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2873.190255 B = 5405.704776 C = 7575.369031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.119 4.119 3 C -0.115 4.115 4 C -0.071 4.071 5 C -0.092 4.092 6 C -0.122 4.122 7 C -0.128 4.128 8 C -0.114 4.114 9 C 0.126 3.874 10 H 0.070 0.930 11 N -0.671 5.671 12 C 0.182 3.818 13 C -0.525 4.525 14 H 0.039 0.961 15 C 0.013 3.987 16 N -0.945 5.945 17 Si 0.944 3.056 18 H -0.263 1.263 19 H -0.280 1.280 20 H -0.257 1.257 21 C -0.072 4.072 22 C -0.130 4.130 23 C -0.138 4.138 24 C -0.121 4.121 25 C -0.121 4.121 26 H 0.064 0.936 27 H 0.050 0.950 28 H 0.046 0.954 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.048 0.952 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.131 0.869 36 H 0.113 0.887 37 H 0.334 0.666 38 H -0.022 1.022 39 H 0.020 0.980 40 H 0.267 0.733 41 H 0.062 0.938 42 H 0.044 0.956 43 H 0.062 0.938 44 H 0.046 0.954 45 H 0.053 0.947 46 H 0.067 0.933 47 H 0.056 0.944 48 H 0.128 0.872 49 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.305 -20.171 9.765 23.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.157 4.157 3 C -0.152 4.152 4 C -0.109 4.109 5 C -0.092 4.092 6 C -0.140 4.140 7 C -0.147 4.147 8 C -0.116 4.116 9 C 0.016 3.984 10 H 0.088 0.912 11 N -0.301 5.301 12 C 0.053 3.947 13 C -0.563 4.563 14 H 0.057 0.943 15 C -0.185 4.185 16 N -0.586 5.586 17 Si 0.767 3.233 18 H -0.188 1.188 19 H -0.205 1.205 20 H -0.181 1.181 21 C -0.091 4.091 22 C -0.187 4.187 23 C -0.196 4.196 24 C -0.139 4.139 25 C -0.138 4.138 26 H 0.083 0.917 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.149 0.851 36 H 0.131 0.869 37 H 0.154 0.846 38 H -0.004 1.004 39 H 0.038 0.962 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.063 0.937 43 H 0.081 0.919 44 H 0.065 0.935 45 H 0.072 0.928 46 H 0.086 0.914 47 H 0.075 0.925 48 H 0.146 0.854 49 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 8.473 -19.457 9.846 23.394 hybrid contribution -1.343 -0.106 0.051 1.348 sum 7.130 -19.562 9.897 23.054 Atomic orbital electron populations 1.21804 0.96064 1.02005 1.01508 1.21511 0.95745 0.95712 1.02694 1.21591 0.94579 0.97551 1.01507 1.20595 0.95261 0.91195 1.03798 1.20132 0.98942 0.97411 0.92734 1.21173 0.99790 0.94457 0.98608 1.21033 1.00503 0.95476 0.97677 1.20757 0.99555 0.97296 0.93944 1.20769 0.94823 0.87494 0.95311 0.91174 1.60652 1.22195 1.41011 1.06263 1.19659 0.86777 0.93214 0.95020 1.21322 1.01848 1.35007 0.98117 0.94275 1.25780 0.97730 0.94302 1.00653 1.70041 1.16067 1.38431 1.34048 0.85761 0.77716 0.79752 0.80027 1.18816 1.20508 1.18104 1.20991 0.91767 0.97102 0.99218 1.21617 1.00007 0.95477 1.01644 1.21789 1.00326 1.00114 0.97367 1.21203 0.99876 0.95439 0.97431 1.21249 0.99597 0.94591 0.98408 0.91732 0.93085 0.93442 0.91408 0.90997 0.92716 0.93334 0.89636 0.90255 0.85147 0.86880 0.84615 1.00407 0.96241 0.92367 0.91957 0.93724 0.91879 0.93466 0.92791 0.91387 0.92466 0.85374 0.84206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 9.91 71.98 0.71 -1.66 16 2 C -0.12 -1.74 5.93 30.59 0.18 -1.56 16 3 C -0.11 -2.13 5.20 30.59 0.16 -1.97 16 4 C -0.07 -1.26 5.35 29.85 0.16 -1.10 16 5 C -0.09 -2.20 5.13 -19.86 -0.10 -2.30 16 6 C -0.12 -3.31 9.70 22.27 0.22 -3.09 16 7 C -0.13 -4.01 9.13 22.27 0.20 -3.81 16 8 C -0.11 -3.56 3.88 -19.87 -0.08 -3.63 16 9 C 0.13 4.20 1.81 44.16 0.08 4.28 16 10 H 0.07 2.41 7.72 -2.39 -0.02 2.39 16 11 N -0.67 -27.97 5.36 -499.47 -2.68 -30.64 16 12 C 0.18 9.02 4.30 85.56 0.37 9.39 16 13 C -0.52 -31.13 9.84 25.60 0.25 -30.88 16 14 H 0.04 2.56 8.06 -2.91 -0.02 2.53 16 15 C 0.01 0.78 5.47 84.65 0.46 1.24 16 16 N -0.95 -60.00 13.96 21.45 0.30 -59.70 16 17 Si 0.94 45.49 27.47 68.60 1.88 47.38 16 18 H -0.26 -12.12 7.11 99.48 0.71 -11.41 16 19 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 20 H -0.26 -11.87 6.54 99.48 0.65 -11.22 16 21 C -0.07 -1.98 2.66 -10.79 -0.03 -2.01 16 22 C -0.13 -3.69 8.89 71.98 0.64 -3.05 16 23 C -0.14 -3.05 8.91 71.98 0.64 -2.41 16 24 C -0.12 -3.32 8.76 22.27 0.20 -3.13 16 25 C -0.12 -2.90 9.70 22.27 0.22 -2.69 16 26 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.05 0.79 8.14 -2.39 -0.02 0.78 16 28 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.09 1.24 8.09 -2.38 -0.02 1.22 16 34 H 0.08 1.25 8.08 -2.39 -0.02 1.23 16 35 H 0.13 3.06 8.06 -2.91 -0.02 3.04 16 36 H 0.11 3.62 6.51 -2.91 -0.02 3.60 16 37 H 0.33 14.01 6.34 -89.70 -0.57 13.44 16 38 H -0.02 -1.10 6.96 -2.39 -0.02 -1.12 16 39 H 0.02 0.97 7.54 -2.39 -0.02 0.95 16 40 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 41 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 42 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.05 1.57 7.66 -2.38 -0.02 1.55 16 45 H 0.05 1.20 6.75 -2.39 -0.02 1.18 16 46 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 47 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 48 H 0.13 3.12 8.04 -2.91 -0.02 3.10 16 49 H 0.14 2.62 8.06 -2.91 -0.02 2.59 16 Total: -1.00 -66.55 385.98 4.04 -62.51 By element: Atomic # 1 Polarization: 28.58 SS G_CDS: 0.25 Total: 28.83 kcal Atomic # 6 Polarization: -52.66 SS G_CDS: 4.28 Total: -48.38 kcal Atomic # 7 Polarization: -87.97 SS G_CDS: -2.38 Total: -90.35 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.88 Total: 47.38 kcal Total: -66.55 4.04 -62.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000501730795.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.541 kcal (2) G-P(sol) polarization free energy of solvation -66.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds