Wall clock time and date at job start Tue Mar 31 2020 06:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 120.00358 * 2 1 4 4 H 1.48499 * 109.46775 * 270.00031 * 3 2 1 5 5 H 1.48502 * 109.46815 * 29.99293 * 3 2 1 6 6 H 1.48494 * 109.47456 * 149.99527 * 3 2 1 7 7 C 1.37878 * 119.99679 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99620 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00414 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47251 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47062 * 180.02562 * 10 9 7 12 12 S 1.81395 * 109.47415 * 179.97438 * 11 10 9 13 13 O 1.42105 * 109.46787 * 70.93943 * 12 11 10 14 14 C 1.76196 * 103.00451 * 179.97438 * 12 11 10 15 15 C 1.38204 * 120.00880 * 94.99941 * 14 12 11 16 16 C 1.38335 * 120.01671 * 180.02562 * 15 14 12 17 17 Cl 1.73598 * 119.98911 * 180.02562 * 16 15 14 18 18 C 1.38374 * 120.02147 * 359.97438 * 16 15 14 19 19 C 1.38172 * 120.01312 * 0.02562 * 18 16 15 20 20 C 1.38437 * 120.00609 * 275.30000 * 14 12 11 21 21 F 1.35108 * 120.01272 * 359.97433 * 20 14 12 22 22 H 0.96994 * 119.99663 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47309 * 59.99419 * 9 7 2 24 24 H 1.08999 * 109.46890 * 299.99864 * 9 7 2 25 25 H 1.08993 * 109.47538 * 59.99871 * 10 9 7 26 26 H 1.08996 * 109.46881 * 299.99184 * 10 9 7 27 27 H 1.09000 * 109.47414 * 59.99678 * 11 10 9 28 28 H 1.09008 * 109.47068 * 299.99826 * 11 10 9 29 29 H 1.08000 * 119.99478 * 359.97438 * 15 14 12 30 30 H 1.07999 * 119.99239 * 180.02562 * 18 16 15 31 31 H 1.08002 * 120.00305 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4802 -4.9871 -0.0001 12 16 2.6589 -6.3659 -0.0009 13 8 3.2993 -6.4423 1.2654 14 6 1.6116 -7.7828 -0.0008 15 6 1.2841 -8.4004 -1.1930 16 6 0.4614 -9.5125 -1.1932 17 17 0.0511 -10.2881 -2.6911 18 6 -0.0337 -10.0076 0.0003 19 6 0.2930 -9.3910 1.1929 20 6 1.1115 -8.2740 1.1930 21 9 1.4267 -7.6674 2.3583 22 1 -0.4849 0.8400 -0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6241 -2.5567 0.8903 25 1 2.8719 -3.6044 0.8904 26 1 2.8718 -3.6044 -0.8895 27 1 0.8538 -5.0446 -0.8903 28 1 0.8533 -5.0451 0.8897 29 1 1.6699 -8.0142 -2.1249 30 1 -0.6756 -10.8761 -0.0003 31 1 -0.0938 -9.7773 2.1243 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000505821173.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:31 Heat of formation + Delta-G solvation = -77.972323 kcal Electronic energy + Delta-G solvation = -17773.871006 eV Core-core repulsion = 14507.953350 eV Total energy + Delta-G solvation = -3265.917656 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.11463 -39.32254 -36.75567 -35.57288 -34.45174 -32.03799 -31.75781 -30.49849 -27.52231 -23.99583 -23.32929 -22.99712 -20.37331 -18.56309 -17.54056 -16.96814 -16.62946 -16.26102 -15.86294 -15.16031 -14.65207 -14.59876 -14.34681 -14.28085 -13.71559 -13.55517 -13.17144 -12.49694 -12.31625 -12.04990 -11.98003 -11.62457 -11.49694 -11.31205 -10.87440 -10.81419 -10.68692 -10.24112 -9.81544 -9.78289 -9.37352 -9.11284 -8.94354 -8.36353 -8.22024 -6.01152 -4.04014 0.37838 0.65665 1.62924 1.85138 2.66095 3.05479 3.31908 3.38266 3.42243 3.82883 3.98441 4.29903 4.45569 4.53045 4.82207 5.03018 5.30724 5.34587 5.45806 5.53686 5.56133 5.58613 5.64353 6.16046 6.27546 6.48061 6.66882 7.01828 7.64859 7.77154 7.98056 8.39279 9.02951 9.60317 11.10108 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.024213 B = 0.003392 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.112148 B = 8253.946900 C = 8754.538636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.027 3.973 10 C -0.093 4.093 11 C -0.438 4.438 12 S 1.322 4.678 13 O -0.839 6.839 14 C -0.486 4.486 15 C -0.007 4.007 16 C -0.067 4.067 17 Cl -0.061 7.061 18 C -0.053 4.053 19 C -0.161 4.161 20 C 0.167 3.833 21 F -0.113 7.113 22 H 0.261 0.739 23 H 0.020 0.980 24 H 0.015 0.985 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.113 0.887 28 H 0.083 0.917 29 H 0.157 0.843 30 H 0.145 0.855 31 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.713 -22.560 -5.931 23.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.011 4.011 10 C -0.132 4.132 11 C -0.576 4.576 12 S 1.518 4.482 13 O -0.834 6.834 14 C -0.580 4.580 15 C -0.026 4.026 16 C -0.095 4.095 17 Cl -0.032 7.032 18 C -0.072 4.072 19 C -0.181 4.181 20 C 0.146 3.854 21 F -0.091 7.091 22 H 0.070 0.930 23 H 0.038 0.962 24 H 0.033 0.967 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.132 0.868 28 H 0.102 0.898 29 H 0.175 0.825 30 H 0.162 0.838 31 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.520 -22.531 -5.981 23.361 hybrid contribution -1.287 0.786 1.919 2.441 sum 0.233 -21.745 -4.062 22.122 Atomic orbital electron populations 1.69967 1.06099 1.26647 1.50806 1.25032 0.94856 0.99317 0.95257 0.86578 0.79881 0.83351 0.78126 1.20561 1.21259 1.19815 1.21269 0.93148 0.91001 1.50707 0.92495 1.19089 0.93795 0.90819 0.97429 1.21326 0.99038 0.91770 1.01075 1.27784 1.11858 1.10462 1.07506 1.69714 0.86569 0.82191 1.09703 1.93154 1.63015 1.82883 1.44373 1.28414 1.15649 1.18901 0.94998 1.20665 0.92880 0.91685 0.97413 1.21015 1.02816 0.97813 0.87868 1.98387 1.92691 1.80260 1.31858 1.21024 0.97202 0.98966 0.89968 1.21214 1.00806 0.96342 0.99730 1.17641 0.94159 0.91903 0.81679 1.91668 1.90462 1.81658 1.45357 0.92983 0.96214 0.96695 0.92780 0.91948 0.86812 0.89787 0.82530 0.83768 0.83666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 7 C -0.52 -14.81 9.11 -34.44 -0.31 -15.12 16 8 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 9 C 0.03 0.70 4.97 -27.88 -0.14 0.56 16 10 C -0.09 -1.86 5.16 -26.73 -0.14 -2.00 16 11 C -0.44 -7.01 5.88 37.16 0.22 -6.79 16 12 S 1.32 17.07 13.45 -107.50 -1.45 15.62 16 13 O -0.84 -16.02 16.00 -35.23 -0.56 -16.59 16 14 C -0.49 -5.82 5.59 -39.52 -0.22 -6.04 16 15 C -0.01 -0.06 9.53 -39.56 -0.38 -0.44 16 16 C -0.07 -0.60 6.32 -39.50 -0.25 -0.85 16 17 Cl -0.06 -0.48 28.95 -51.86 -1.50 -1.99 16 18 C -0.05 -0.46 9.83 -39.56 -0.39 -0.84 16 19 C -0.16 -1.67 10.03 -39.52 -0.40 -2.07 16 20 C 0.17 2.28 7.16 -39.42 -0.28 2.00 16 21 F -0.11 -1.94 15.32 2.25 0.03 -1.91 16 22 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 23 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.11 1.54 8.14 -51.92 -0.42 1.12 16 28 H 0.08 1.52 8.14 -51.92 -0.42 1.10 16 29 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16 30 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 31 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 306.00 15.07 4.61 4.61 Total: -1.00 -36.37 306.00 -8.88 -45.25 By element: Atomic # 1 Polarization: -1.95 SS G_CDS: -3.35 Total: -5.30 kcal Atomic # 6 Polarization: -27.68 SS G_CDS: -2.38 Total: -30.06 kcal Atomic # 7 Polarization: -27.01 SS G_CDS: 0.74 Total: -26.27 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -0.56 Total: -16.59 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.03 Total: -1.91 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 17.07 SS G_CDS: -1.45 Total: 15.62 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.50 Total: -1.99 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -36.37 -8.88 -45.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000505821173.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.722 kcal (2) G-P(sol) polarization free energy of solvation -36.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds