Wall clock time and date at job start Tue Mar 31 2020 06:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 120.00358 * 2 1 4 4 H 1.48499 * 109.46775 * 270.00031 * 3 2 1 5 5 H 1.48502 * 109.46815 * 29.99293 * 3 2 1 6 6 H 1.48494 * 109.47456 * 149.99527 * 3 2 1 7 7 C 1.37878 * 119.99679 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99620 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00414 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47251 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47062 * 180.02562 * 10 9 7 12 12 S 1.81395 * 109.47415 * 179.97438 * 11 10 9 13 13 O 1.42105 * 109.46787 * 70.93943 * 12 11 10 14 14 C 1.76196 * 103.00451 * 179.97438 * 12 11 10 15 15 C 1.38204 * 120.00880 * 94.99941 * 14 12 11 16 16 C 1.38335 * 120.01671 * 180.02562 * 15 14 12 17 17 Cl 1.73598 * 119.98911 * 180.02562 * 16 15 14 18 18 C 1.38374 * 120.02147 * 359.97438 * 16 15 14 19 19 C 1.38172 * 120.01312 * 0.02562 * 18 16 15 20 20 C 1.38437 * 120.00609 * 275.30000 * 14 12 11 21 21 F 1.35108 * 120.01272 * 359.97433 * 20 14 12 22 22 H 0.96994 * 119.99663 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47309 * 59.99419 * 9 7 2 24 24 H 1.08999 * 109.46890 * 299.99864 * 9 7 2 25 25 H 1.08993 * 109.47538 * 59.99871 * 10 9 7 26 26 H 1.08996 * 109.46881 * 299.99184 * 10 9 7 27 27 H 1.09000 * 109.47414 * 59.99678 * 11 10 9 28 28 H 1.09008 * 109.47068 * 299.99826 * 11 10 9 29 29 H 1.08000 * 119.99478 * 359.97438 * 15 14 12 30 30 H 1.07999 * 119.99239 * 180.02562 * 18 16 15 31 31 H 1.08002 * 120.00305 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4802 -4.9871 -0.0001 12 16 2.6589 -6.3659 -0.0009 13 8 3.2993 -6.4423 1.2654 14 6 1.6116 -7.7828 -0.0008 15 6 1.2841 -8.4004 -1.1930 16 6 0.4614 -9.5125 -1.1932 17 17 0.0511 -10.2881 -2.6911 18 6 -0.0337 -10.0076 0.0003 19 6 0.2930 -9.3910 1.1929 20 6 1.1115 -8.2740 1.1930 21 9 1.4267 -7.6674 2.3583 22 1 -0.4849 0.8400 -0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6241 -2.5567 0.8903 25 1 2.8719 -3.6044 0.8904 26 1 2.8718 -3.6044 -0.8895 27 1 0.8538 -5.0446 -0.8903 28 1 0.8533 -5.0451 0.8897 29 1 1.6699 -8.0142 -2.1249 30 1 -0.6756 -10.8761 -0.0003 31 1 -0.0938 -9.7773 2.1243 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000505821173.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:30 Heat of formation + Delta-G solvation = -101.780299 kcal Electronic energy + Delta-G solvation = -17774.903397 eV Core-core repulsion = 14507.953350 eV Total energy + Delta-G solvation = -3266.950047 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.23105 -40.11150 -37.44473 -36.92831 -36.31598 -34.02673 -32.56383 -31.31742 -29.41639 -25.48289 -24.57498 -23.88097 -22.12249 -19.51966 -18.67076 -18.37011 -17.90126 -17.51813 -16.98566 -16.57023 -16.16433 -15.99557 -15.69069 -15.17317 -14.66821 -14.41758 -14.32631 -14.23923 -13.84665 -13.66196 -13.08101 -12.84435 -12.69706 -12.54204 -12.52059 -12.39686 -12.11185 -11.78816 -11.60073 -11.31168 -10.97980 -10.55926 -10.53174 -9.77942 -9.47649 -8.20557 -6.32233 -0.50162 -0.12960 0.68100 1.04647 1.40615 1.42480 1.53507 1.61882 2.19645 2.41363 2.79079 3.04900 3.12585 3.55475 3.84995 4.02719 4.06154 4.14996 4.23946 4.58196 4.59977 4.71775 4.82872 4.85118 4.91718 5.13565 5.19429 5.45030 5.49998 5.69461 5.83401 6.22623 6.84948 7.37407 8.91202 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.024213 B = 0.003392 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.112148 B = 8253.946900 C = 8754.538636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.966 3.034 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.027 3.973 10 C -0.087 4.087 11 C -0.447 4.447 12 S 1.408 4.592 13 O -0.903 6.903 14 C -0.501 4.501 15 C 0.003 3.997 16 C -0.069 4.069 17 Cl -0.044 7.044 18 C -0.041 4.041 19 C -0.161 4.161 20 C 0.123 3.877 21 F -0.145 7.145 22 H 0.264 0.736 23 H 0.008 0.992 24 H -0.025 1.025 25 H 0.034 0.966 26 H 0.095 0.905 27 H 0.142 0.858 28 H 0.053 0.947 29 H 0.197 0.803 30 H 0.176 0.824 31 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.142 -23.950 -8.100 25.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.790 3.210 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.584 4.584 8 H 0.082 0.918 9 C -0.012 4.012 10 C -0.126 4.126 11 C -0.583 4.583 12 S 1.606 4.394 13 O -0.898 6.898 14 C -0.597 4.597 15 C -0.017 4.017 16 C -0.097 4.097 17 Cl -0.015 7.015 18 C -0.059 4.059 19 C -0.181 4.181 20 C 0.103 3.897 21 F -0.124 7.124 22 H 0.072 0.928 23 H 0.027 0.973 24 H -0.006 1.006 25 H 0.052 0.948 26 H 0.114 0.886 27 H 0.160 0.840 28 H 0.072 0.928 29 H 0.214 0.786 30 H 0.194 0.806 31 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 1.962 -23.896 -8.156 25.325 hybrid contribution -1.538 1.012 2.509 3.112 sum 0.424 -22.884 -5.648 23.574 Atomic orbital electron populations 1.70104 1.07881 1.27793 1.51740 1.26015 0.95783 1.03489 0.94662 0.85429 0.78484 0.78211 0.78836 1.18969 1.21072 1.18978 1.21761 0.93793 0.92346 1.50544 0.91790 1.19020 0.94363 0.92872 0.94907 1.21135 0.98026 0.91764 1.01694 1.27849 1.12527 1.10505 1.07419 1.68862 0.83829 0.80262 1.06486 1.93023 1.65491 1.84036 1.47298 1.28108 1.16898 1.18861 0.95850 1.21101 0.91804 0.91128 0.97623 1.21185 1.02196 0.97601 0.88669 1.98404 1.92485 1.79862 1.30763 1.21412 0.96328 0.99114 0.89062 1.21435 0.99965 0.95325 1.01390 1.18200 0.96509 0.93763 0.81230 1.91587 1.91121 1.82525 1.47161 0.92779 0.97346 1.00621 0.94760 0.88625 0.84029 0.92791 0.78619 0.80649 0.82068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.59 13.29 21.45 0.28 -57.31 16 2 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 3 Si 0.97 44.54 29.54 68.60 2.03 46.57 16 4 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 5 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.55 -31.46 9.11 25.60 0.23 -31.23 16 8 H 0.06 3.50 7.74 -2.91 -0.02 3.47 16 9 C 0.03 1.42 4.97 29.85 0.15 1.57 16 10 C -0.09 -3.56 5.16 30.59 0.16 -3.40 16 11 C -0.45 -14.47 5.88 71.98 0.42 -14.05 16 12 S 1.41 35.63 13.45 -56.49 -0.76 34.87 16 13 O -0.90 -35.42 16.00 -148.98 -2.38 -37.80 16 14 C -0.50 -11.41 5.59 22.31 0.12 -11.29 16 15 C 0.00 0.04 9.53 22.28 0.21 0.25 16 16 C -0.07 -0.99 6.32 22.33 0.14 -0.85 16 17 Cl -0.04 -0.54 28.95 -2.72 -0.08 -0.62 16 18 C -0.04 -0.58 9.83 22.29 0.22 -0.36 16 19 C -0.16 -3.13 10.03 22.31 0.22 -2.90 16 20 C 0.12 3.37 7.16 22.37 0.16 3.53 16 21 F -0.15 -5.26 15.32 44.97 0.69 -4.57 16 22 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 23 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 24 H -0.02 -1.48 8.14 -2.39 -0.02 -1.50 16 25 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 27 H 0.14 3.68 8.14 -2.39 -0.02 3.66 16 28 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.20 1.25 8.06 -2.91 -0.02 1.22 16 30 H 0.18 1.36 8.06 -2.91 -0.02 1.34 16 31 H 0.16 2.47 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -82.59 306.00 3.42 -79.17 By element: Atomic # 1 Polarization: -3.08 SS G_CDS: 1.14 Total: -1.94 kcal Atomic # 6 Polarization: -60.88 SS G_CDS: 2.51 Total: -58.37 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: 0.28 Total: -57.31 kcal Atomic # 8 Polarization: -35.42 SS G_CDS: -2.38 Total: -37.80 kcal Atomic # 9 Polarization: -5.26 SS G_CDS: 0.69 Total: -4.57 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Atomic # 16 Polarization: 35.63 SS G_CDS: -0.76 Total: 34.87 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -0.08 Total: -0.62 kcal Total: -82.59 3.42 -79.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000505821173.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.611 kcal (2) G-P(sol) polarization free energy of solvation -82.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds