Wall clock time and date at job start Tue Mar 31 2020 05:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46997 * 2 1 4 4 C 1.52997 * 109.47317 * 60.00177 * 3 2 1 5 5 C 1.52997 * 109.47269 * 299.99832 * 3 2 1 6 6 C 1.50706 * 109.46573 * 180.02562 * 3 2 1 7 7 C 1.38233 * 120.00109 * 359.72323 * 6 3 2 8 8 C 1.38239 * 119.99759 * 179.74218 * 7 6 3 9 9 C 1.38234 * 119.99962 * 0.55517 * 8 7 6 10 10 C 1.50696 * 120.00172 * 179.72028 * 9 8 7 11 11 N 1.46896 * 109.47554 * 269.97849 * 10 9 8 12 12 C 1.46904 * 110.99896 * 293.95678 * 11 10 9 13 13 C 1.46893 * 111.00340 * 169.99750 * 11 10 9 14 14 H 1.08996 * 109.47180 * 310.00150 * 13 11 10 15 15 C 1.52999 * 109.47112 * 70.00418 * 13 11 10 16 16 C 1.50707 * 109.47323 * 190.00362 * 13 11 10 17 17 H 1.07995 * 119.99631 * 359.97438 * 16 13 11 18 18 C 1.37872 * 119.99808 * 180.02562 * 16 13 11 19 19 N 1.31508 * 120.00357 * 359.97438 * 18 16 13 20 20 Si 1.86808 * 119.99659 * 179.97438 * 18 16 13 21 21 H 1.48495 * 109.47047 * 59.99878 * 20 18 16 22 22 H 1.48498 * 109.47172 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.46947 * 299.99735 * 20 18 16 24 24 C 1.38238 * 120.00082 * 359.69846 * 9 8 7 25 25 C 1.38235 * 120.00108 * 0.02562 * 24 9 8 26 26 H 1.09000 * 109.46866 * 300.00212 * 1 2 3 27 27 H 1.08996 * 109.47261 * 59.99820 * 1 2 3 28 28 H 1.09001 * 109.47377 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46866 * 239.99788 * 2 1 3 30 30 H 1.09001 * 109.46611 * 119.99905 * 2 1 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 4 3 2 32 32 H 1.09002 * 109.47153 * 299.99641 * 4 3 2 33 33 H 1.08996 * 109.46952 * 59.99813 * 4 3 2 34 34 H 1.09000 * 109.47140 * 300.00547 * 5 3 2 35 35 H 1.09001 * 109.47230 * 59.99691 * 5 3 2 36 36 H 1.09001 * 109.47375 * 180.02562 * 5 3 2 37 37 H 1.08004 * 119.99934 * 0.02562 * 7 6 3 38 38 H 1.07999 * 119.99953 * 180.27297 * 8 7 6 39 39 H 1.09004 * 109.46985 * 29.97969 * 10 9 8 40 40 H 1.08995 * 109.47261 * 149.97746 * 10 9 8 41 41 H 1.08993 * 109.47572 * 59.99756 * 12 11 10 42 42 H 1.09002 * 109.46624 * 179.97438 * 12 11 10 43 43 H 1.08997 * 109.46682 * 299.99420 * 12 11 10 44 44 H 1.09001 * 109.47114 * 180.02562 * 15 13 11 45 45 H 1.09005 * 109.46539 * 299.99614 * 15 13 11 46 46 H 1.08996 * 109.47317 * 59.99816 * 15 13 11 47 47 H 0.97004 * 120.00287 * 180.02562 * 19 18 16 48 48 H 1.08000 * 120.00578 * 179.97438 * 24 9 8 49 49 H 1.07999 * 120.00165 * 179.97438 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5301 2.1638 1.2492 5 6 1.5301 2.1637 -1.2492 6 6 3.5471 1.4424 -0.0006 7 6 4.2382 0.2452 0.0047 8 6 5.6206 0.2452 -0.0013 9 6 6.3118 1.4423 -0.0010 10 6 7.8187 1.4423 -0.0011 11 7 8.3086 1.4424 1.3838 12 6 7.9592 2.6957 2.0657 13 6 9.7574 1.2042 1.4298 14 1 10.0010 0.3289 0.8276 15 6 10.4929 2.4257 0.8749 16 6 10.1825 0.9668 2.8560 17 1 9.4497 0.9910 3.6489 18 6 11.5070 0.7199 3.1485 19 7 12.3994 0.6910 2.1830 20 14 12.0340 0.4264 4.9165 21 1 11.3205 -0.7591 5.4554 22 1 13.4986 0.1855 4.9630 23 1 11.7018 1.6191 5.7365 24 6 5.6207 2.6395 -0.0010 25 6 4.2383 2.6396 -0.0008 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.8938 3.1913 1.2494 32 1 0.4401 2.1638 1.2492 33 1 1.8934 1.6499 2.1392 34 1 1.8934 1.6499 -2.1392 35 1 0.4401 2.1637 -1.2493 36 1 1.8938 3.1913 -1.2495 37 1 3.6981 -0.6901 0.0089 38 1 6.1605 -0.6901 -0.0016 39 1 8.1820 0.5522 -0.5150 40 1 8.1820 2.3322 -0.5150 41 1 6.8756 2.8127 2.0783 42 1 8.3333 2.6690 3.0891 43 1 8.4092 3.5352 1.5358 44 1 11.5679 2.2487 0.9086 45 1 10.1855 2.5972 -0.1567 46 1 10.2493 3.3010 1.4770 47 1 13.3312 0.5169 2.3888 48 1 6.1606 3.5748 -0.0003 49 1 3.6983 3.5749 -0.0004 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000509398165.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:24 Heat of formation + Delta-G solvation = 10.987054 kcal Electronic energy + Delta-G solvation = -23391.072473 eV Core-core repulsion = 20317.370614 eV Total energy + Delta-G solvation = -3073.701859 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.95688 -37.78694 -36.27505 -32.89700 -31.49665 -30.79994 -29.70335 -28.26497 -27.41522 -26.50702 -25.19744 -24.78894 -23.21686 -21.93550 -21.05889 -19.17703 -18.77286 -16.57684 -16.09457 -15.26553 -15.18840 -14.88921 -14.78064 -14.31258 -14.13723 -13.69445 -13.59934 -13.35969 -13.19090 -13.10278 -12.55330 -12.27489 -12.15301 -12.14323 -11.89600 -11.60527 -11.34423 -11.26875 -11.21183 -10.99725 -10.91290 -10.79204 -10.71102 -10.64649 -10.47023 -10.40209 -10.25785 -10.01109 -9.75772 -8.89629 -8.60594 -8.36080 -8.24034 -7.10105 -5.98543 -4.02050 1.62651 1.70055 3.34393 3.38307 3.41711 3.99985 4.44602 4.52396 4.58514 4.80735 5.12081 5.17284 5.19094 5.21493 5.24912 5.29395 5.32927 5.40869 5.43633 5.53247 5.62952 5.73582 5.73930 5.78006 5.84750 5.86288 5.91623 5.95575 6.05478 6.14729 6.22015 6.23971 6.30138 6.34486 6.38891 6.44740 6.69780 6.72208 6.83385 6.84867 6.91831 7.03826 7.14754 7.30022 7.48889 7.73413 7.86758 8.16067 8.41092 8.62275 9.03904 9.62799 11.08517 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.028635 B = 0.003113 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.584869 B = 8992.506032 C = 9297.510029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.116 4.116 3 C -0.022 4.022 4 C -0.140 4.140 5 C -0.139 4.139 6 C -0.083 4.083 7 C -0.124 4.124 8 C -0.099 4.099 9 C -0.062 4.062 10 C 0.088 3.912 11 N -0.528 5.528 12 C 0.033 3.967 13 C 0.211 3.789 14 H 0.038 0.962 15 C -0.172 4.172 16 C -0.497 4.497 17 H 0.062 0.938 18 C 0.058 3.942 19 N -0.896 5.896 20 Si 0.897 3.103 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.278 1.278 24 C -0.113 4.113 25 C -0.119 4.119 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.073 0.927 40 H 0.032 0.968 41 H 0.046 0.954 42 H 0.071 0.929 43 H 0.015 0.985 44 H 0.088 0.912 45 H 0.006 0.994 46 H 0.031 0.969 47 H 0.260 0.740 48 H 0.115 0.885 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.019 2.282 -6.530 22.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.153 4.153 3 C -0.022 4.022 4 C -0.197 4.197 5 C -0.196 4.196 6 C -0.083 4.083 7 C -0.141 4.141 8 C -0.117 4.117 9 C -0.063 4.063 10 C -0.040 4.040 11 N -0.251 5.251 12 C -0.115 4.115 13 C 0.105 3.895 14 H 0.056 0.944 15 C -0.231 4.231 16 C -0.536 4.536 17 H 0.080 0.920 18 C -0.143 4.143 19 N -0.536 5.536 20 Si 0.725 3.275 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.204 1.204 24 C -0.131 4.131 25 C -0.137 4.137 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.092 0.908 40 H 0.051 0.949 41 H 0.064 0.936 42 H 0.090 0.910 43 H 0.033 0.967 44 H 0.106 0.894 45 H 0.025 0.975 46 H 0.050 0.950 47 H 0.070 0.930 48 H 0.133 0.867 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -21.028 1.857 -6.300 22.030 hybrid contribution 0.930 0.574 0.533 1.216 sum -20.099 2.431 -5.766 21.050 Atomic orbital electron populations 1.21914 0.96027 1.01430 1.01957 1.21662 0.95630 0.95775 1.02231 1.19445 0.91105 0.95752 0.95882 1.21934 1.00565 1.00227 0.96951 1.21929 1.00614 1.00173 0.96872 1.19666 0.94203 0.93285 1.01139 1.21086 0.94084 0.97491 1.01479 1.21043 0.93712 0.97941 0.99020 1.19979 0.96035 0.92862 0.97395 1.21039 0.89694 1.00732 0.92534 1.62368 1.17993 1.33338 1.11389 1.22273 0.98595 0.90523 1.00128 1.19328 0.79679 0.93455 0.97076 0.94413 1.22408 1.05599 0.99630 0.95494 1.21074 0.92753 1.47392 0.92383 0.92030 1.24921 0.96595 0.95546 0.97245 1.69874 1.02142 1.50087 1.31450 0.86584 0.77222 0.78756 0.84974 1.20232 1.21425 1.20392 1.21021 0.93908 0.97670 1.00540 1.20819 0.93898 0.97193 1.01759 0.92460 0.92521 0.92985 0.91689 0.91563 0.92587 0.92343 0.92459 0.92626 0.92334 0.92609 0.86188 0.86099 0.90825 0.94946 0.93571 0.91047 0.96674 0.89353 0.97516 0.95001 0.92987 0.86692 0.86854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.14 9.21 37.16 0.34 -0.80 16 2 C -0.12 -1.01 3.65 -26.73 -0.10 -1.11 16 3 C -0.02 -0.21 0.63 -155.66 -0.10 -0.31 16 4 C -0.14 -1.28 7.94 37.16 0.29 -0.98 16 5 C -0.14 -1.20 7.93 37.16 0.29 -0.90 16 6 C -0.08 -1.02 4.76 -104.62 -0.50 -1.51 16 7 C -0.12 -1.63 8.98 -39.58 -0.36 -1.98 16 8 C -0.10 -1.50 9.70 -39.58 -0.38 -1.89 16 9 C -0.06 -1.02 4.88 -104.63 -0.51 -1.53 16 10 C 0.09 1.64 4.69 -4.98 -0.02 1.62 16 11 N -0.53 -11.52 4.69 -237.74 -1.12 -12.64 16 12 C 0.03 0.67 8.27 60.07 0.50 1.17 16 13 C 0.21 5.33 2.31 -68.87 -0.16 5.17 16 14 H 0.04 1.05 7.93 -51.93 -0.41 0.63 16 15 C -0.17 -4.19 8.22 37.16 0.31 -3.89 16 16 C -0.50 -13.73 7.91 -34.44 -0.27 -14.01 16 17 H 0.06 1.71 7.12 -52.49 -0.37 1.34 16 18 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 19 N -0.90 -25.63 11.32 55.43 0.63 -25.00 16 20 Si 0.90 21.53 29.54 -169.99 -5.02 16.50 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 C -0.11 -1.66 7.97 -39.58 -0.32 -1.98 16 25 C -0.12 -1.53 8.71 -39.58 -0.34 -1.88 16 26 H 0.06 0.40 6.43 -51.93 -0.33 0.07 16 27 H 0.06 0.39 6.43 -51.93 -0.33 0.05 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.57 7.52 -51.93 -0.39 0.18 16 30 H 0.07 0.62 7.50 -51.93 -0.39 0.23 16 31 H 0.06 0.51 7.39 -51.93 -0.38 0.13 16 32 H 0.06 0.45 6.43 -51.93 -0.33 0.12 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.43 6.43 -51.93 -0.33 0.09 16 36 H 0.05 0.48 7.39 -51.93 -0.38 0.09 16 37 H 0.12 1.36 5.90 -52.48 -0.31 1.05 16 38 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 39 H 0.07 1.37 7.88 -51.93 -0.41 0.97 16 40 H 0.03 0.60 7.00 -51.93 -0.36 0.24 16 41 H 0.05 0.84 6.17 -51.93 -0.32 0.52 16 42 H 0.07 1.55 6.76 -51.93 -0.35 1.20 16 43 H 0.01 0.30 6.46 -51.93 -0.34 -0.04 16 44 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 45 H 0.01 0.13 6.91 -51.93 -0.36 -0.23 16 46 H 0.03 0.75 6.42 -51.93 -0.33 0.42 16 47 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 48 H 0.12 1.63 8.03 -52.49 -0.42 1.20 16 49 H 0.11 1.25 7.10 -52.49 -0.37 0.88 16 LS Contribution 363.97 15.07 5.48 5.48 Total: -1.00 -28.46 363.97 -9.83 -38.29 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -8.38 Total: 0.65 kcal Atomic # 6 Polarization: -21.87 SS G_CDS: -1.42 Total: -23.29 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: -0.49 Total: -37.64 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -28.46 -9.83 -38.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000509398165.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.278 kcal (2) G-P(sol) polarization free energy of solvation -28.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds